HHsearch alignment for GI: 254781197 and conserved domain: TIGR00041
>TIGR00041 DTMP_kinase thymidylate kinase; InterPro: IPR000062 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process, 0006235 dTTP biosynthetic process.
Probab=97.62 E-value=7.8e-06 Score=54.68 Aligned_cols=137 Identities=16% Similarity=0.101 Sum_probs=79.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC--CCCC-CCHHHHHHHCCC-CEEEEEEEECCC
Q ss_conf 971899988999998999999985189817998611888999832355--3000-123542111027-636445550486
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYI--DYRF-ISQSQFKGWKHT-GLFIETTKVRDE 76 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~--dY~F-vs~e~F~~~i~~-g~flE~~~~~g~ 76 (185)
T Consensus 1 m~~fiviEGiDGaGKTT~~~~l~~~l~~l~g~~~~~t~EPg~t~~ge~IR~~l~D~l~~~~~~~~~~~~alLFaAdR~~H 80 (211)
T TIGR00041 1 MGMFIVIEGIDGAGKTTQLNLLKKLLKELEGYKVLFTREPGGTPIGEKIRELLQDLLNENEEPLTDKTEALLFAADRHDH 80 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 97458885115875899999999997751383478871899987899999999987414666335999999999858999
Q ss_pred EEEEECCCHHHHHHHCCCCCCC---------------CCCCCHHHHHHCCCC--CH-HHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 0554432002333201232002---------------431000133210553--10-11222133289999988630342
Q gi|254781197|r 77 YYGYLKEDINNPMEHGYDILLI---------------LTHQGLAPLKKLYED--QV-TSIFIAPPSEAELIQRRIKRRED 138 (185)
Q Consensus 77 ~YGt~~~~i~~~~~~g~~~il~---------------id~~G~~~lk~~~~~--~~-~~IfI~pps~~~L~~RL~~R~~d 138 (185)
T Consensus 81 L~~~-~~~ik~al~~~~~Vi~DRy~~Ss~AYQg~~~~~d~~~~~~lN~~~~~~~~Pd~t~~Ld~-d~e~al~R~~~~g~~ 158 (211)
T TIGR00041 81 LEHV-EEKIKPALAQGKLVISDRYLFSSIAYQGLARGIDIDLVLELNEDALGDMKPDLTILLDI-DPEVALERLRKRGED 158 (211)
T ss_pred HHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEEE-CHHHHHHHHHCCCCH
T ss_conf 9978-98778898669679984112435777542256888899999775211358666898860-737798875204723
Q ss_pred C
Q ss_conf 0
Q gi|254781197|r 139 T 139 (185)
Q Consensus 139 ~ 139 (185)
T Consensus 159 ~ 159 (211)
T TIGR00041 159 E 159 (211)
T ss_pred H
T ss_conf 4