HHsearch alignment for GI: 254781197 and conserved domain: TIGR00235
>TIGR00235 udk uridine kinase; InterPro: IPR000764 Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP A cDNA for uridine kinase from mouse brain was found which encodes a protein of 277 amino acids. A truncated form of the cDNA was expressed in Escherichia coli, and shown to display uridine kinase activity and to readily form a tetramer, the most active form of the wild-type enzyme. Sequence analysis has identified three ATP-binding site consensus motifs. The predicted secondary structure, and sequence comparison with kinases of known structure, is consistent with uridine kinase having the alpha/beta core nucleotide-binding fold common to many kinases .; GO: 0005524 ATP binding, 0016773 phosphotransferase activity alcohol group as acceptor.
Probab=97.66 E-value=0.00042 Score=44.58 Aligned_cols=162 Identities=19% Similarity=0.200 Sum_probs=82.1
Q ss_pred EEEEECCCCCCH----HHHHHHHHHHCCC--EEEE-EE----ECCCCCCCCCC-CCCCCCCCCHHHHHHH--------CC
Q ss_conf 899988999998----9999999851898--1799-86----11888999832-3553000123542111--------02
Q gi|254781197|r 4 IFVLIGASGVGE----TTIAKQVVLNSEY--LVMP-VG----VTTRRPRVDEK-QYIDYRFISQSQFKGW--------KH 63 (185)
Q Consensus 4 iivi~GpSGsGK----~tl~~~L~~~~~~--~~~~-is----~TTR~~R~~E~-~g~dY~Fvs~e~F~~~--------i~ 63 (185)
T Consensus 12 iigI~GgSgSGKs~iATtV~~~i~~~~~~kv~~~~~I~~D~YYK~~GP~~~~~~~r~~~NfDHP~AfD~~Ll~~Hl~nLk 91 (220)
T TIGR00235 12 IIGISGGSGSGKSLIATTVARKIYEQLGKKVLEIVLISQDNYYKDQGPSDLEMAERKKTNFDHPDAFDNDLLYEHLKNLK 91 (220)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCHHCCHHHHHHHHHHHH
T ss_conf 99701766101567899999999998314001457750324458898873124643125889800303799999999984
Q ss_pred CCEEEEEEEECCC-EEEEECCCHHHHHHHCCCCCCCCCCCCHHH-----HHHCCCCCHHHHHHCCCCHHHHHHHHH----
Q ss_conf 7636445550486-055443200233320123200243100013-----321055310112221332899999886----
Q gi|254781197|r 64 TGLFIETTKVRDE-YYGYLKEDINNPMEHGYDILLILTHQGLAP-----LKKLYEDQVTSIFIAPPSEAELIQRRI---- 133 (185)
Q Consensus 64 ~g~flE~~~~~g~-~YGt~~~~i~~~~~~g~~~il~id~~G~~~-----lk~~~~~~~~~IfI~pps~~~L~~RL~---- 133 (185)
T Consensus 92 ~g~~~~~P-~Ydyv~Ht--Rv~~eT~~~~P~~VvI---lEGi~~l~D~Rl~~L~d---lkifvDt~~D~rliRRl~RD~~ 162 (220)
T TIGR00235 92 NGSAIDVP-VYDYVNHT--RVKKETVHVEPKDVVI---LEGILLLTDERLRDLMD---LKIFVDTPLDIRLIRRLERDIE 162 (220)
T ss_pred CCCEECCC-CCCCCCEE--CCCCCCEEECCEEEEE---EECCHHHHHHHHHHHHC---CEEEEECCCHHHHHHHHHHHHH
T ss_conf 68802245-42541002--0255626873506899---70618888799988718---2367746830325656565575
Q ss_pred HCCCCCHHHHHHHHHHH-----------HHCCCEEEEC-CCHHHHHHHHHHHH
Q ss_conf 30342078999999987-----------6369889993-97899999999999
Q gi|254781197|r 134 KRREDTPFNLDPDLFGK-----------NHSYSFTIVN-NHLPTACRQVGFIR 174 (185)
Q Consensus 134 ~R~~d~~~~i~~rl~~~-----------~~~fD~~IvN-ddle~a~~~l~~I~ 174 (185)
T Consensus 163 ~RGR~~dSvI~Qy~~~V~Pm~~~FvEP~K~~AD~IiP~g~~n~~A~~~l~~~I 215 (220)
T TIGR00235 163 ERGRSLDSVIDQYRKTVRPMYLQFVEPTKQYADLIIPEGGKNEVAINVLKTKI 215 (220)
T ss_pred HCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHH
T ss_conf 42897889999999853462101455010146676258988168899999999