HHsearch alignment for GI: 254781197 and conserved domain: TIGR02639
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=97.42 E-value=0.00011 Score=47.88 Aligned_cols=23 Identities=39% Similarity=0.735 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99988999998999999985189
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
T Consensus 530 FLF~GPTGVGKTElak~LA~~LG 552 (774)
T TIGR02639 530 FLFVGPTGVGKTELAKQLAEELG 552 (774)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 88647989625788999999708