HHsearch alignment for GI: 254781197 and conserved domain: TIGR02782
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=96.29 E-value=0.0035 Score=39.23 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=48.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC-----CCEEEEEEECCCCCCCCCCCCCCCCCCCHH--HHHHHCCCCE-E----EEEE
Q ss_conf 89998899999899999998518-----981799861188899983235530001235--4211102763-6----4455
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNS-----EYLVMPVGVTTRRPRVDEKQYIDYRFISQS--QFKGWKHTGL-F----IETT 71 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~-----~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e--~F~~~i~~g~-f----lE~~ 71 (185)
T Consensus 141 NIlv~GGTGSGKTTLaNAlla~I~~l~~P~dR~vIiEDT~ElQC~A~N~V~lrT~d~~Gi~M~~LLk~TLRlRPDRI~VG 220 (315)
T TIGR02782 141 NILVVGGTGSGKTTLANALLAEIAKLNDPDDRVVIIEDTAELQCAAENLVALRTSDDVGISMTRLLKATLRLRPDRIIVG 220 (315)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEE
T ss_conf 88998145885799999999988521699961899854713201378706874489866147888887500588733563
Q ss_pred EECCCEEEEECCCHHHHHHHCC
Q ss_conf 5048605544320023332012
Q gi|254781197|r 72 KVRDEYYGYLKEDINNPMEHGY 93 (185)
Q Consensus 72 ~~~g~~YGt~~~~i~~~~~~g~ 93 (185)
T Consensus 221 EVRg~----eAL~LLKAWNTGH 238 (315)
T TIGR02782 221 EVRGG----EALDLLKAWNTGH 238 (315)
T ss_pred EECCH----HHHHHHHHHCCCC
T ss_conf 01438----9999986405899