HHsearch alignment for GI: 254781197 and conserved domain: cd00227
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.32 E-value=2.9e-06 Score=57.18 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=83.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC--EEEEEE-E-CCCCCCCCCCC-CCCCCCCCHHHHHHHCCCCEEEEE-EEECC
Q ss_conf 718999889999989999999851898--179986-1-18889998323-553000123542111027636445-55048
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEY--LVMPVG-V-TTRRPRVDEKQ-YIDYRFISQSQFKGWKHTGLFIET-TKVRD 75 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~--~~~~is-~-TTR~~R~~E~~-g~dY~Fvs~e~F~~~i~~g~flE~-~~~~g 75 (185)
T Consensus 2 G~II~LNG~SSSGKSsiAraLQ~~l~~p~~h~~vD~f~~~~p~~~~~~~~~~~--------~~~-----~~~~~~g~~~~ 68 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIE--------FDG-----DGGVSPGPEFR 68 (175)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHCCCCCCCCCCCCC--------CCC-----CCCCCCCHHHH
T ss_conf 74999868998988999999998476756884185898867631368754223--------487-----76635415699
Q ss_pred CEEEEECCCHHHHHHHCCCCCCCCCCCC---HHHH-HHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHH---H
Q ss_conf 6055443200233320123200243100---0133-2105531011222133289999988630342078999999---9
Q gi|254781197|r 76 EYYGYLKEDINNPMEHGYDILLILTHQG---LAPL-KKLYEDQVTSIFIAPPSEAELIQRRIKRREDTPFNLDPDL---F 148 (185)
Q Consensus 76 ~~YGt~~~~i~~~~~~g~~~il~id~~G---~~~l-k~~~~~~~~~IfI~pps~~~L~~RL~~R~~d~~~~i~~rl---~ 148 (185)
T Consensus 69 ~~~~~~~~~iaa~a~aG~nvIvD~v~~~~~~l~d~~~~L~g~~v~~VGV~C~-l~~l~~RE~~RgDR~~G-~A~~q~~~V 146 (175)
T cd00227 69 LLEGAWYEAVAAMARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCP-GEVAEGRETARGDRVPG-QARKQARVV 146 (175)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEEEEECC-HHHHHHHHHHCCCCCCC-HHHHHHHHH
T ss_conf 9999999999999977998898631238088999999857992799998789-99999998745899964-678899984
Q ss_pred HHHHCCCEEEEC--CCHHHHHHHHH
Q ss_conf 876369889993--97899999999
Q gi|254781197|r 149 GKNHSYSFTIVN--NHLPTACRQVG 171 (185)
Q Consensus 149 ~~~~~fD~~IvN--ddle~a~~~l~ 171 (185)
T Consensus 147 H~~~~YDleVDTs~~sp~eCA~~I~ 171 (175)
T cd00227 147 HAGVEYDLEVDTTHKTPIECARAIA 171 (175)
T ss_pred HCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf 3599885687799999999999999