HHsearch alignment for GI: 254781197 and conserved domain: cd00227

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.32  E-value=2.9e-06  Score=57.18  Aligned_cols=155  Identities=15%  Similarity=0.132  Sum_probs=83.2

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCC--EEEEEE-E-CCCCCCCCCCC-CCCCCCCCHHHHHHHCCCCEEEEE-EEECC
Q ss_conf             718999889999989999999851898--179986-1-18889998323-553000123542111027636445-55048
Q gi|254781197|r    2 AHIFVLIGASGVGETTIAKQVVLNSEY--LVMPVG-V-TTRRPRVDEKQ-YIDYRFISQSQFKGWKHTGLFIET-TKVRD   75 (185)
Q Consensus         2 ~kiivi~GpSGsGK~tl~~~L~~~~~~--~~~~is-~-TTR~~R~~E~~-g~dY~Fvs~e~F~~~i~~g~flE~-~~~~g   75 (185)
T Consensus         2 G~II~LNG~SSSGKSsiAraLQ~~l~~p~~h~~vD~f~~~~p~~~~~~~~~~~--------~~~-----~~~~~~g~~~~   68 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIE--------FDG-----DGGVSPGPEFR   68 (175)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHCCCCCCCCCCCCC--------CCC-----CCCCCCCHHHH
T ss_conf             74999868998988999999998476756884185898867631368754223--------487-----76635415699


Q ss_pred             CEEEEECCCHHHHHHHCCCCCCCCCCCC---HHHH-HHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHH---H
Q ss_conf             6055443200233320123200243100---0133-2105531011222133289999988630342078999999---9
Q gi|254781197|r   76 EYYGYLKEDINNPMEHGYDILLILTHQG---LAPL-KKLYEDQVTSIFIAPPSEAELIQRRIKRREDTPFNLDPDL---F  148 (185)
Q Consensus        76 ~~YGt~~~~i~~~~~~g~~~il~id~~G---~~~l-k~~~~~~~~~IfI~pps~~~L~~RL~~R~~d~~~~i~~rl---~  148 (185)
T Consensus        69 ~~~~~~~~~iaa~a~aG~nvIvD~v~~~~~~l~d~~~~L~g~~v~~VGV~C~-l~~l~~RE~~RgDR~~G-~A~~q~~~V  146 (175)
T cd00227          69 LLEGAWYEAVAAMARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCP-GEVAEGRETARGDRVPG-QARKQARVV  146 (175)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEEEEECC-HHHHHHHHHHCCCCCCC-HHHHHHHHH
T ss_conf             9999999999999977998898631238088999999857992799998789-99999998745899964-678899984


Q ss_pred             HHHHCCCEEEEC--CCHHHHHHHHH
Q ss_conf             876369889993--97899999999
Q gi|254781197|r  149 GKNHSYSFTIVN--NHLPTACRQVG  171 (185)
Q Consensus       149 ~~~~~fD~~IvN--ddle~a~~~l~  171 (185)
T Consensus       147 H~~~~YDleVDTs~~sp~eCA~~I~  171 (175)
T cd00227         147 HAGVEYDLEVDTTHKTPIECARAIA  171 (175)
T ss_pred             HCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf             3599885687799999999999999