HHsearch alignment for GI: 254781197 and conserved domain: cd03220
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.52 E-value=0.0024 Score=40.14 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
T Consensus 48 GeivgilG~NGaGKSTLl~~i~Gl~ 72 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999799981999999997587