HHsearch alignment for GI: 254781197 and conserved domain: cd03222
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.01 E-value=0.00067 Score=43.40 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
T Consensus 25 GEiv~ilGpNGaGKSTllk~i~G 47 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
T ss_conf 98999989999999999999968