HHsearch alignment for GI: 254781197 and conserved domain: cd03228
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.28 E-value=0.00034 Score=45.15 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
T Consensus 28 Ge~i~ivG~sGsGKSTLl~ll~gl~ 52 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999983999999997677