HHsearch alignment for GI: 254781197 and conserved domain: cd03236
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.21 E-value=0.0003 Score=45.42 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
T Consensus 26 GEi~gLiGpNGaGKSTLlk~i~Gl 49 (255)
T cd03236 26 GQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 809999899997099999999679