HHsearch alignment for GI: 254781197 and conserved domain: cd03294
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.42 E-value=0.00011 Score=47.95 Aligned_cols=48 Identities=25% Similarity=0.403 Sum_probs=30.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC--CCCCCCCCCCHHHHHHH
Q ss_conf 7189998899999899999998518981799861188899983--23553000123542111
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDE--KQYIDYRFISQSQFKGW 61 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E--~~g~dY~Fvs~e~F~~~ 61 (185)
T Consensus 50 GE~~~ivG~SGsGKSTLLr~i~GL~~------------p~~G~I~~~G~~i~~~~~~~l~~~ 99 (269)
T cd03294 50 GEIFVIMGLSGSGKSTLLRCINRLIE------------PTSGKVLIDGQDIAAMSRKELREL 99 (269)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC------------CCCEEEEECCEECCCCCHHHHHHH
T ss_conf 99999998998489999999975999------------997599999999999998999885