HHsearch alignment for GI: 254781197 and conserved domain: cd04164
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.40 E-value=9.6e-05 Score=48.31 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=32.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC
Q ss_conf 999889999989999999851898179986118889998323
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQ 46 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~ 46 (185)
T Consensus 4 ValvG~pN~GKStL~N~l~g~~~~ivs~~pgtTrd~~~~~~~ 45 (157)
T cd04164 4 VVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESID 45 (157)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCEEECCCCCEEEECCEEEEE
T ss_conf 999889999899999999689733432889847863267895