Query gi|254781197|ref|YP_003065610.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 185
No_of_seqs 119 out of 2661
Neff 7.1
Searched_HMMs 39220
Date Mon May 30 06:50:53 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781197.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00300 gmk guanylate kinase; 100.0 0 0 401.5 14.7 181 1-182 6-195 (208)
2 COG0194 Gmk Guanylate kinase [ 100.0 0 0 397.2 15.2 174 1-176 3-182 (191)
3 TIGR03263 guanyl_kin guanylate 100.0 0 0 386.4 15.0 172 2-174 1-178 (180)
4 pfam00625 Guanylate_kin Guanyl 100.0 0 0 366.1 13.0 173 2-175 1-180 (182)
5 smart00072 GuKc Guanylate kina 100.0 0 0 355.2 11.9 175 2-177 2-183 (184)
6 PRK10078 ribose 1,5-bisphospho 100.0 0 0 325.4 15.7 176 1-181 1-181 (184)
7 cd00071 GMPK Guanosine monopho 100.0 0 0 292.4 8.6 130 4-134 1-131 (137)
8 KOG0609 consensus 100.0 1.4E-45 0 287.2 10.4 183 2-185 340-538 (542)
9 KOG0707 consensus 100.0 4.4E-43 0 272.0 9.5 171 3-174 38-219 (231)
10 TIGR02322 phosphon_PhnN phosph 100.0 1.9E-31 4.7E-36 204.2 13.6 167 2-174 1-180 (183)
11 COG3709 Uncharacterized compon 99.9 1.3E-26 3.4E-31 175.9 14.4 169 1-175 4-181 (192)
12 KOG0708 consensus 99.7 3E-17 7.7E-22 121.3 9.5 164 3-184 188-357 (359)
13 PRK08356 hypothetical protein; 98.9 2.6E-09 6.6E-14 75.0 5.3 159 1-178 3-194 (195)
14 PRK08233 hypothetical protein; 98.8 5.5E-08 1.4E-12 67.3 9.5 153 2-183 3-181 (182)
15 PRK05480 uridine kinase; Provi 98.8 1.3E-07 3.3E-12 65.1 10.3 166 4-179 8-208 (209)
16 PRK11545 gntK gluconate kinase 98.7 7.6E-09 1.9E-13 72.3 3.8 153 2-181 8-175 (177)
17 PRK09825 idnK D-gluconate kina 98.7 9.9E-09 2.5E-13 71.6 3.7 147 2-172 3-164 (176)
18 cd02023 UMPK Uridine monophosp 98.7 1.4E-07 3.5E-12 64.9 9.2 158 4-170 1-191 (198)
19 PTZ00301 uridine kinase; Provi 98.7 1.3E-07 3.4E-12 65.0 8.9 167 1-177 1-207 (210)
20 PRK12339 2-phosphoglycerate ki 98.7 1.5E-07 3.7E-12 64.7 8.2 162 2-174 3-195 (197)
21 PRK06696 uridine kinase; Valid 98.6 1.3E-07 3.4E-12 65.0 7.3 156 4-165 28-218 (227)
22 PRK02496 adk adenylate kinase; 98.6 7.7E-08 2E-12 66.4 5.9 161 1-175 1-183 (185)
23 TIGR01313 therm_gnt_kin carboh 98.6 3.9E-08 1E-12 68.1 3.2 142 5-170 1-169 (175)
24 cd02021 GntK Gluconate kinase 98.5 4.3E-08 1.1E-12 67.8 3.0 114 4-137 1-120 (150)
25 pfam07931 CPT Chloramphenicol 98.5 4.5E-07 1.1E-11 61.9 7.7 154 2-171 1-170 (174)
26 PRK04220 2-phosphoglycerate ki 98.5 1.8E-06 4.5E-11 58.4 9.7 165 4-178 94-293 (306)
27 PRK04182 cytidylate kinase; Pr 98.5 8E-07 2E-11 60.5 7.4 153 4-179 2-176 (178)
28 PRK00091 miaA tRNA delta(2)-is 98.4 1.9E-07 4.9E-12 64.1 3.8 55 1-55 3-66 (304)
29 PRK00279 adk adenylate kinase; 98.4 2.3E-07 5.8E-12 63.6 4.1 155 5-176 3-214 (215)
30 COG0125 Tmk Thymidylate kinase 98.4 3.3E-07 8.4E-12 62.7 4.7 166 1-174 2-201 (208)
31 TIGR01359 UMP_CMP_kin_fam UMP- 98.4 5.4E-07 1.4E-11 61.4 5.8 151 4-174 1-188 (189)
32 COG1936 Predicted nucleotide k 98.4 6.5E-06 1.7E-10 55.1 11.3 140 3-176 1-156 (180)
33 PRK03839 putative kinase; Prov 98.4 4.6E-06 1.2E-10 56.0 9.9 135 4-176 2-153 (180)
34 TIGR02173 cyt_kin_arch cytidyl 98.4 5.2E-07 1.3E-11 61.5 5.1 124 4-150 2-132 (173)
35 cd02028 UMPK_like Uridine mono 98.4 1.1E-06 2.7E-11 59.7 6.7 132 4-145 1-154 (179)
36 PRK03846 adenylylsulfate kinas 98.3 6.1E-07 1.6E-11 61.1 4.8 151 2-184 24-197 (198)
37 PRK07667 uridine kinase; Provi 98.3 3.5E-06 8.8E-11 56.7 8.2 135 4-150 16-171 (190)
38 pfam00485 PRK Phosphoribulokin 98.3 1.1E-06 2.8E-11 59.6 5.7 132 4-144 1-163 (196)
39 COG0563 Adk Adenylate kinase a 98.3 5.3E-06 1.4E-10 55.6 9.1 156 4-172 2-175 (178)
40 cd00227 CPT Chloramphenicol (C 98.3 2.9E-06 7.4E-11 57.2 7.7 155 2-171 2-171 (175)
41 PRK00698 tmk thymidylate kinas 98.3 7.8E-07 2E-11 60.5 4.4 39 2-41 3-41 (204)
42 PRK01184 hypothetical protein; 98.3 4E-06 1E-10 56.4 8.0 162 3-179 2-180 (183)
43 PRK00131 aroK shikimate kinase 98.3 2.2E-06 5.7E-11 57.9 6.6 143 2-175 4-170 (175)
44 PRK13975 thymidylate kinase; P 98.3 2.2E-06 5.7E-11 57.8 6.4 38 1-44 1-38 (198)
45 COG0572 Udk Uridine kinase [Nu 98.3 1.5E-06 3.8E-11 58.8 5.3 132 4-147 10-165 (218)
46 PRK05541 adenylylsulfate kinas 98.3 7.6E-07 1.9E-11 60.6 3.5 147 2-180 7-173 (176)
47 COG1102 Cmk Cytidylate kinase 98.3 3.4E-06 8.7E-11 56.8 6.8 109 4-136 2-112 (179)
48 PRK03731 aroL shikimate kinase 98.2 4.8E-06 1.2E-10 55.9 6.9 151 1-179 1-170 (172)
49 PRK00023 cmk cytidylate kinase 98.2 3.1E-05 7.9E-10 51.2 10.8 28 1-28 2-30 (225)
50 PRK00889 adenylylsulfate kinas 98.2 2E-06 5.1E-11 58.1 4.5 150 2-183 4-174 (175)
51 PRK09270 frcK putative fructos 98.2 8E-06 2E-10 54.6 7.5 24 3-26 35-58 (230)
52 PRK13974 thymidylate kinase; P 98.2 3.3E-06 8.5E-11 56.8 5.4 169 2-180 3-211 (212)
53 PRK13946 shikimate kinase; Pro 98.2 7.1E-06 1.8E-10 54.9 6.7 147 2-180 20-191 (195)
54 KOG3354 consensus 98.2 1.5E-06 3.9E-11 58.8 3.3 106 4-137 14-140 (191)
55 PRK00081 coaE dephospho-CoA ki 98.1 1.5E-06 3.7E-11 58.9 3.0 62 116-178 128-196 (199)
56 COG2074 2-phosphoglycerate kin 98.1 1.3E-05 3.3E-10 53.4 7.6 166 2-179 89-291 (299)
57 cd02024 NRK1 Nicotinamide ribo 98.1 6.4E-06 1.6E-10 55.2 5.6 27 4-30 1-27 (187)
58 PRK12289 ribosome-associated G 98.1 1.3E-06 3.4E-11 59.1 1.8 24 2-25 171-194 (351)
59 TIGR02204 MsbA_rel ABC transpo 98.1 5.7E-06 1.5E-10 55.5 4.6 76 2-87 366-445 (576)
60 PRK11160 cysteine/glutathione 98.1 4E-06 1E-10 56.4 3.8 71 2-82 367-441 (575)
61 PRK13947 shikimate kinase; Pro 98.0 2.4E-05 6E-10 51.9 7.2 149 1-175 1-166 (171)
62 PRK00625 shikimate kinase; Pro 98.0 5.6E-06 1.4E-10 55.5 3.9 132 5-164 3-153 (173)
63 cd01428 ADK Adenylate kinase ( 98.0 1.7E-06 4.3E-11 58.6 1.2 134 5-151 2-166 (194)
64 TIGR00763 lon ATP-dependent pr 98.0 5.8E-06 1.5E-10 55.4 3.8 110 2-124 449-578 (941)
65 PRK07429 phosphoribulokinase; 98.0 2.5E-05 6.5E-10 51.7 6.9 129 4-146 10-164 (331)
66 PRK11174 cysteine/glutathione 98.0 8.9E-06 2.3E-10 54.3 4.4 69 2-81 376-448 (588)
67 PRK07261 topology modulation p 97.9 7.8E-06 2E-10 54.7 3.6 66 5-83 3-73 (171)
68 TIGR02673 FtsE cell division A 97.9 7.8E-06 2E-10 54.7 3.1 25 2-26 28-52 (215)
69 PRK04040 adenylate kinase; Pro 97.9 0.00011 2.8E-09 48.0 8.9 156 1-174 1-187 (189)
70 pfam03193 DUF258 Protein of un 97.9 4.5E-06 1.1E-10 56.1 1.6 24 2-25 35-58 (161)
71 COG1132 MdlB ABC-type multidru 97.9 5.4E-06 1.4E-10 55.6 1.9 92 2-104 355-455 (567)
72 PRK10522 multidrug transporter 97.9 1.8E-05 4.5E-10 52.6 4.4 51 2-62 349-399 (547)
73 PRK08154 anaerobic benzoate ca 97.9 4E-05 1E-09 50.5 6.0 146 3-176 134-301 (304)
74 TIGR03574 selen_PSTK L-seryl-t 97.8 5.6E-05 1.4E-09 49.7 6.6 122 4-149 1-130 (249)
75 cd01854 YjeQ_engC YjeQ/EngC. 97.8 5.9E-06 1.5E-10 55.4 1.6 24 2-25 161-184 (287)
76 cd03251 ABCC_MsbA MsbA is an e 97.8 2.3E-05 5.7E-10 52.0 4.5 51 2-62 28-78 (234)
77 TIGR01193 bacteriocin_ABC ABC- 97.8 1.2E-05 3.1E-10 53.6 3.1 26 1-26 499-524 (710)
78 PRK06547 hypothetical protein; 97.8 0.00019 4.9E-09 46.6 9.3 122 3-139 16-142 (184)
79 PRK06762 hypothetical protein; 97.8 2.4E-05 6.1E-10 51.9 4.4 28 1-28 1-28 (166)
80 PRK13949 shikimate kinase; Pro 97.8 0.0001 2.6E-09 48.2 7.6 29 1-31 1-29 (169)
81 cd03253 ABCC_ATM1_transporter 97.8 2.5E-05 6.3E-10 51.7 4.5 50 2-61 27-76 (236)
82 TIGR00955 3a01204 Pigment prec 97.8 1.5E-05 3.9E-10 53.0 3.3 50 2-61 58-108 (671)
83 TIGR02324 CP_lyasePhnL phospho 97.8 1.6E-05 4E-10 52.9 3.2 25 2-26 34-58 (224)
84 cd02026 PRK Phosphoribulokinas 97.8 5.4E-05 1.4E-09 49.8 5.9 134 4-151 1-160 (273)
85 KOG3079 consensus 97.8 1.1E-05 2.9E-10 53.7 2.3 158 1-175 7-192 (195)
86 cd03252 ABCC_Hemolysin The ABC 97.8 3.1E-05 7.9E-10 51.2 4.4 51 2-62 28-78 (237)
87 COG0324 MiaA tRNA delta(2)-iso 97.8 1.4E-05 3.5E-10 53.2 2.6 55 1-55 2-65 (308)
88 TIGR01360 aden_kin_iso1 adenyl 97.8 8.6E-05 2.2E-09 48.6 6.6 144 3-172 4-186 (191)
89 PRK01889 ribosome-associated G 97.8 1.5E-05 3.8E-10 53.1 2.6 24 2-25 194-217 (353)
90 PRK13657 cyclic beta-1,2-gluca 97.8 3.1E-05 7.9E-10 51.2 4.2 70 2-81 361-434 (585)
91 TIGR02203 MsbA_lipidA lipid A 97.8 1.4E-05 3.7E-10 53.1 2.5 21 2-22 388-408 (603)
92 PRK12338 hypothetical protein; 97.8 7E-05 1.8E-09 49.1 5.8 166 4-178 6-209 (320)
93 TIGR01186 proV glycine betaine 97.8 2.1E-05 5.4E-10 52.1 3.2 44 2-58 19-65 (372)
94 PRK10790 putative multidrug tr 97.7 3.3E-05 8.3E-10 51.1 4.0 69 2-80 367-439 (593)
95 TIGR02315 ABC_phnC phosphonate 97.7 2E-05 5.1E-10 52.3 2.9 21 2-22 28-48 (253)
96 pfam00406 ADK Adenylate kinase 97.7 8.8E-06 2.3E-10 54.4 1.0 117 7-136 1-123 (186)
97 TIGR01842 type_I_sec_PrtD type 97.7 2.8E-05 7.1E-10 51.5 3.6 47 2-58 356-402 (556)
98 PRK13477 bifunctional pantoate 97.7 0.00021 5.3E-09 46.3 8.0 73 110-183 417-511 (512)
99 pfam02223 Thymidylate_kin Thym 97.7 1.5E-05 3.8E-10 53.1 2.1 36 8-44 2-37 (186)
100 COG1162 Predicted GTPases [Gen 97.7 1.6E-05 4E-10 52.9 2.2 24 2-25 164-187 (301)
101 TIGR00455 apsK adenylylsulfate 97.7 2.2E-05 5.5E-10 52.1 2.9 26 2-27 19-44 (187)
102 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.7 5.4E-05 1.4E-09 49.8 4.9 50 2-61 29-78 (238)
103 PRK08118 topology modulation p 97.7 3E-05 7.6E-10 51.3 3.4 64 1-79 1-70 (167)
104 PRK04195 replication factor C 97.7 0.00059 1.5E-08 43.7 10.0 120 3-134 41-172 (403)
105 PRK10789 putative multidrug tr 97.7 4E-05 1E-09 50.5 4.0 78 2-89 341-425 (569)
106 cd02020 CMPK Cytidine monophos 97.7 6.1E-05 1.6E-09 49.5 4.8 27 4-31 1-27 (147)
107 PRK05057 aroK shikimate kinase 97.7 0.0002 5.1E-09 46.4 7.4 151 2-179 4-171 (172)
108 cd03292 ABC_FtsE_transporter F 97.7 9.3E-05 2.4E-09 48.4 5.6 50 2-61 27-76 (214)
109 TIGR00972 3a0107s01c2 phosphat 97.7 3.2E-05 8.1E-10 51.1 3.1 23 2-24 27-49 (248)
110 TIGR01846 type_I_sec_HlyB type 97.7 5.7E-05 1.5E-09 49.6 4.3 47 2-60 491-539 (703)
111 TIGR02982 heterocyst_DevA ABC 97.7 3.3E-05 8.5E-10 51.0 3.0 53 2-68 31-87 (220)
112 TIGR00235 udk uridine kinase; 97.7 0.00042 1.1E-08 44.6 8.6 162 4-174 12-215 (220)
113 TIGR01277 thiQ thiamine ABC tr 97.7 6E-05 1.5E-09 49.5 4.2 41 2-42 24-69 (213)
114 cd01672 TMPK Thymidine monopho 97.6 5.6E-05 1.4E-09 49.7 4.0 37 4-41 2-38 (200)
115 PRK13948 shikimate kinase; Pro 97.6 0.00012 3E-09 47.8 5.6 151 3-178 11-178 (182)
116 PRK11176 lipid transporter ATP 97.6 5.5E-05 1.4E-09 49.7 3.9 68 2-79 368-439 (581)
117 cd03256 ABC_PhnC_transporter A 97.6 0.00012 3.2E-09 47.7 5.7 24 2-25 27-50 (241)
118 TIGR00960 3a0501s02 Type II (G 97.6 4.4E-05 1.1E-09 50.3 3.2 24 2-25 29-52 (216)
119 TIGR00041 DTMP_kinase thymidyl 97.6 7.8E-06 2E-10 54.7 -0.7 137 1-139 1-159 (211)
120 COG1136 SalX ABC-type antimicr 97.6 5E-05 1.3E-09 50.0 3.4 22 2-23 31-52 (226)
121 COG1126 GlnQ ABC-type polar am 97.6 5E-05 1.3E-09 50.0 3.3 22 2-23 28-49 (240)
122 KOG1384 consensus 97.6 3.6E-05 9.1E-10 50.8 2.5 124 2-136 7-159 (348)
123 PRK11860 bifunctional 3-phosph 97.6 0.0014 3.5E-08 41.6 10.6 25 4-28 444-468 (662)
124 TIGR02857 CydD ABC transporter 97.6 4.8E-05 1.2E-09 50.1 3.1 55 2-61 378-434 (570)
125 COG1116 TauB ABC-type nitrate/ 97.6 0.00011 2.9E-09 47.9 5.0 64 2-76 29-92 (248)
126 PRK10247 putative ABC transpor 97.6 0.00011 2.7E-09 48.1 4.8 24 2-25 33-56 (225)
127 cd03248 ABCC_TAP TAP, the Tran 97.6 8.9E-05 2.3E-09 48.5 4.4 47 2-60 40-88 (226)
128 cd03254 ABCC_Glucan_exporter_l 97.6 0.00011 2.7E-09 48.1 4.7 50 2-61 29-78 (229)
129 COG3265 GntK Gluconate kinase 97.6 8.5E-05 2.2E-09 48.6 4.2 140 8-172 1-155 (161)
130 TIGR00958 3a01208 antigen pept 97.6 6E-05 1.5E-09 49.5 3.3 23 2-25 559-581 (770)
131 COG0703 AroK Shikimate kinase 97.6 0.0001 2.6E-09 48.1 4.5 141 1-178 1-167 (172)
132 KOG0056 consensus 97.6 9E-05 2.3E-09 48.5 4.1 51 2-62 564-614 (790)
133 cd03369 ABCC_NFT1 Domain 2 of 97.6 0.00013 3.3E-09 47.6 4.9 49 2-60 34-82 (207)
134 TIGR03608 L_ocin_972_ABC putat 97.6 0.00011 2.8E-09 47.9 4.5 24 2-25 24-47 (206)
135 cd03245 ABCC_bacteriocin_expor 97.6 0.0001 2.7E-09 48.1 4.3 50 2-61 30-79 (220)
136 TIGR03415 ABC_choXWV_ATP choli 97.5 6.6E-05 1.7E-09 49.3 3.2 24 2-25 50-73 (382)
137 PRK13973 thymidylate kinase; P 97.5 7.8E-05 2E-09 48.8 3.6 164 2-179 3-210 (216)
138 cd03262 ABC_HisP_GlnQ_permease 97.5 7.1E-05 1.8E-09 49.1 3.3 23 2-24 26-48 (213)
139 TIGR00968 3a0106s01 sulfate AB 97.5 6.7E-05 1.7E-09 49.2 3.1 23 2-24 26-48 (241)
140 cd03258 ABC_MetN_methionine_tr 97.5 0.00015 3.9E-09 47.1 4.9 55 2-68 31-87 (233)
141 cd03260 ABC_PstB_phosphate_tra 97.5 7.9E-05 2E-09 48.8 3.4 24 2-25 26-49 (227)
142 cd03246 ABCC_Protease_Secretio 97.5 0.00012 3.1E-09 47.7 4.3 26 2-27 28-53 (173)
143 COG0237 CoaE Dephospho-CoA kin 97.5 0.00012 3E-09 47.8 4.2 158 1-179 1-195 (201)
144 cd03244 ABCC_MRP_domain2 Domai 97.5 0.00015 3.8E-09 47.2 4.7 26 2-27 30-55 (221)
145 PRK10070 glycine betaine trans 97.5 7.9E-05 2E-09 48.8 3.2 23 2-24 54-76 (400)
146 cd03291 ABCC_CFTR1 The CFTR su 97.5 0.00012 3.1E-09 47.7 4.1 26 2-27 63-88 (282)
147 PRK12337 2-phosphoglycerate ki 97.5 0.00026 6.6E-09 45.8 5.8 165 4-177 264-470 (492)
148 cd03257 ABC_NikE_OppD_transpor 97.5 0.00013 3.2E-09 47.6 4.0 25 2-26 31-55 (228)
149 COG4088 Predicted nucleotide k 97.5 0.00018 4.6E-09 46.7 4.8 126 3-152 2-139 (261)
150 PRK10584 putative ABC transpor 97.5 0.0002 5E-09 46.5 4.9 48 2-59 36-83 (228)
151 cd03261 ABC_Org_Solvent_Resist 97.5 0.00014 3.7E-09 47.3 4.2 24 2-25 26-49 (235)
152 cd03290 ABCC_SUR1_N The SUR do 97.5 0.00014 3.6E-09 47.3 4.1 26 2-27 27-52 (218)
153 KOG3209 consensus 97.5 4E-05 1E-09 50.5 1.2 52 30-83 64-115 (984)
154 cd03229 ABC_Class3 This class 97.5 0.00011 2.8E-09 48.0 3.3 24 2-25 26-49 (178)
155 TIGR00630 uvra excinuclease AB 97.5 0.0001 2.6E-09 48.2 3.2 23 1-23 664-686 (956)
156 PRK00098 ribosome-associated G 97.4 8.6E-05 2.2E-09 48.6 2.8 24 2-25 164-187 (298)
157 PRK11831 putative ABC transpor 97.4 0.00023 5.9E-09 46.1 5.0 25 2-26 34-58 (269)
158 COG4988 CydD ABC-type transpor 97.4 0.00022 5.6E-09 46.2 4.8 51 2-62 347-397 (559)
159 TIGR03375 type_I_sec_LssB type 97.4 0.00016 4.1E-09 47.0 4.1 51 2-62 491-541 (694)
160 cd03298 ABC_ThiQ_thiamine_tran 97.4 0.00011 2.8E-09 48.0 3.2 24 2-25 24-47 (211)
161 PRK10771 thiQ thiamine transpo 97.4 0.0002 5.1E-09 46.5 4.6 26 2-27 25-50 (233)
162 cd03288 ABCC_SUR2 The SUR doma 97.4 0.00019 4.8E-09 46.6 4.4 49 2-60 47-95 (257)
163 cd03300 ABC_PotA_N PotA is an 97.4 0.00011 2.9E-09 47.9 3.3 23 2-24 26-48 (232)
164 PRK13808 adenylate kinase; Pro 97.4 0.00071 1.8E-08 43.2 7.3 158 5-178 3-195 (297)
165 KOG0061 consensus 97.4 0.00024 6E-09 46.0 4.9 54 2-56 56-112 (613)
166 PRK10851 sulfate/thiosulfate t 97.4 0.0002 5E-09 46.5 4.4 24 2-25 28-51 (352)
167 cd03301 ABC_MalK_N The N-termi 97.4 0.00021 5.4E-09 46.3 4.5 24 2-25 26-49 (213)
168 cd03294 ABC_Pro_Gly_Bertaine T 97.4 0.00011 2.8E-09 48.0 3.1 48 2-61 50-99 (269)
169 PRK10419 nikE nickel transport 97.4 0.00034 8.8E-09 45.1 5.6 51 2-62 38-88 (266)
170 cd03271 ABC_UvrA_II The excisi 97.4 0.00013 3.4E-09 47.5 3.5 22 2-23 21-42 (261)
171 cd03296 ABC_CysA_sulfate_impor 97.4 0.00012 3E-09 47.8 3.2 23 2-24 28-50 (239)
172 TIGR02639 ClpA ATP-dependent C 97.4 0.00011 2.9E-09 47.9 3.1 23 5-27 530-552 (774)
173 PTZ00088 adenylate kinase 1; P 97.4 6.1E-05 1.6E-09 49.5 1.7 28 5-32 3-30 (225)
174 cd03278 ABC_SMC_barmotin Barmo 97.4 0.00013 3.4E-09 47.5 3.4 21 2-23 23-43 (197)
175 PRK13648 cbiO cobalt transport 97.4 0.00025 6.4E-09 45.9 4.7 24 2-25 35-58 (269)
176 TIGR03269 met_CoM_red_A2 methy 97.4 0.00038 9.7E-09 44.8 5.7 23 2-24 26-48 (520)
177 cd03223 ABCD_peroxisomal_ALDP 97.4 0.0002 5.2E-09 46.4 4.2 32 2-33 27-58 (166)
178 cd03299 ABC_ModC_like Archeal 97.4 0.00013 3.3E-09 47.6 3.2 24 2-25 25-48 (235)
179 cd04164 trmE TrmE (MnmE, ThdF, 97.4 9.6E-05 2.5E-09 48.3 2.5 42 5-46 4-45 (157)
180 COG4639 Predicted kinase [Gene 97.4 0.00011 2.7E-09 48.0 2.7 119 1-147 1-129 (168)
181 COG3840 ThiQ ABC-type thiamine 97.4 0.00026 6.7E-09 45.7 4.8 42 2-43 25-71 (231)
182 KOG3347 consensus 97.4 0.0018 4.5E-08 40.9 9.0 139 5-176 10-166 (176)
183 COG3839 MalK ABC-type sugar tr 97.4 0.00015 3.8E-09 47.2 3.4 23 2-24 29-51 (338)
184 cd04163 Era Era subfamily. Er 97.4 0.00013 3.3E-09 47.5 3.1 43 4-46 5-47 (168)
185 PRK11248 tauB taurine transpor 97.4 0.00025 6.4E-09 45.9 4.5 38 2-39 27-64 (255)
186 PRK06761 hypothetical protein; 97.4 0.00015 3.9E-09 47.2 3.3 59 1-64 1-64 (281)
187 PRK12288 ribosome-associated G 97.4 0.0001 2.6E-09 48.2 2.4 23 2-24 207-229 (344)
188 PRK03003 engA GTP-binding prot 97.4 7.2E-05 1.8E-09 49.0 1.6 90 4-102 213-304 (474)
189 PRK11701 phnK phosphonates tra 97.4 0.00029 7.4E-09 45.5 4.7 36 2-37 32-67 (258)
190 PRK11629 lolD lipoprotein tran 97.4 0.00027 7E-09 45.7 4.5 24 2-25 35-58 (233)
191 cd03293 ABC_NrtD_SsuB_transpor 97.4 0.00023 5.9E-09 46.1 4.1 24 2-25 30-53 (220)
192 cd03297 ABC_ModC_molybdenum_tr 97.4 0.00015 3.9E-09 47.1 3.2 24 2-25 23-46 (214)
193 PRK12269 bifunctional cytidyla 97.4 0.00027 7E-09 45.7 4.4 28 1-28 32-60 (863)
194 PRK13635 cbiO cobalt transport 97.3 0.00024 6.1E-09 46.0 4.0 25 2-26 33-57 (279)
195 PRK13540 cytochrome c biogenes 97.3 0.00029 7.4E-09 45.5 4.4 26 2-27 27-52 (200)
196 PRK13542 consensus 97.3 0.00032 8.2E-09 45.2 4.7 43 1-43 43-85 (224)
197 cd03295 ABC_OpuCA_Osmoprotecti 97.3 0.00017 4.3E-09 46.9 3.2 24 2-25 27-50 (242)
198 PRK13543 cytochrome c biogenes 97.3 0.00032 8.2E-09 45.3 4.6 36 2-37 37-72 (214)
199 cd03234 ABCG_White The White s 97.3 0.00019 4.9E-09 46.6 3.5 25 2-26 33-57 (226)
200 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.3 0.00029 7.5E-09 45.5 4.4 25 2-26 30-54 (218)
201 KOG0058 consensus 97.3 0.00023 5.8E-09 46.1 3.8 26 2-27 494-519 (716)
202 cd03231 ABC_CcmA_heme_exporter 97.3 0.00032 8.2E-09 45.3 4.5 26 2-27 26-51 (201)
203 cd03259 ABC_Carb_Solutes_like 97.3 0.0003 7.7E-09 45.4 4.4 49 2-53 26-79 (213)
204 cd03226 ABC_cobalt_CbiO_domain 97.3 0.00028 7E-09 45.6 4.1 25 2-26 26-50 (205)
205 CHL00131 ycf16 sulfate ABC tra 97.3 0.00019 4.8E-09 46.6 3.3 23 2-24 32-54 (252)
206 PRK09580 sufC cysteine desulfu 97.3 0.00021 5.3E-09 46.4 3.4 24 2-25 27-50 (248)
207 PRK11264 putative amino-acid A 97.3 0.0002 5.2E-09 46.4 3.4 23 2-24 27-49 (248)
208 cd02030 NDUO42 NADH:Ubiquinone 97.3 0.00024 6.1E-09 46.0 3.7 24 4-27 1-24 (219)
209 cd03250 ABCC_MRP_domain1 Domai 97.3 0.0002 5E-09 46.5 3.3 25 2-26 31-55 (204)
210 cd03214 ABC_Iron-Siderophores_ 97.3 0.00034 8.6E-09 45.1 4.4 26 2-27 25-50 (180)
211 cd03224 ABC_TM1139_LivF_branch 97.3 0.0002 5E-09 46.5 3.2 26 2-27 26-51 (222)
212 cd01895 EngA2 EngA2 subfamily. 97.3 0.00013 3.2E-09 47.6 2.2 51 5-55 5-57 (174)
213 PRK13642 cbiO cobalt transport 97.3 0.00029 7.5E-09 45.5 4.0 26 2-27 33-58 (277)
214 cd03289 ABCC_CFTR2 The CFTR su 97.3 0.00026 6.6E-09 45.8 3.7 48 2-60 30-77 (275)
215 TIGR00017 cmk cytidylate kinas 97.3 0.00027 7E-09 45.7 3.8 60 1-66 1-68 (223)
216 TIGR03499 FlhF flagellar biosy 97.3 0.0002 5E-09 46.5 3.1 13 4-16 196-208 (282)
217 TIGR01192 chvA glucan exporter 97.3 0.00034 8.7E-09 45.1 4.3 73 2-94 361-434 (592)
218 cd03235 ABC_Metallic_Cations A 97.3 0.0003 7.6E-09 45.4 3.9 34 2-35 25-58 (213)
219 cd03228 ABCC_MRP_Like The MRP 97.3 0.00034 8.5E-09 45.1 4.2 25 2-26 28-52 (171)
220 PRK13634 cbiO cobalt transport 97.3 0.00019 4.9E-09 46.6 2.9 25 2-26 20-44 (276)
221 cd03233 ABC_PDR_domain1 The pl 97.3 0.00025 6.3E-09 45.9 3.5 25 2-26 33-57 (202)
222 cd03232 ABC_PDR_domain2 The pl 97.3 0.0004 1E-08 44.7 4.6 23 2-24 33-55 (192)
223 cd03237 ABC_RNaseL_inhibitor_d 97.3 0.00022 5.6E-09 46.2 3.2 25 2-26 25-49 (246)
224 PRK11000 maltose/maltodextrin 97.3 0.00021 5.5E-09 46.3 3.2 24 2-25 29-52 (369)
225 PRK09493 glnQ glutamine ABC tr 97.3 0.00033 8.4E-09 45.2 4.1 25 2-26 27-51 (240)
226 PRK13646 cbiO cobalt transport 97.3 0.00034 8.7E-09 45.1 4.1 25 2-26 33-57 (286)
227 cd00464 SK Shikimate kinase (S 97.3 0.00034 8.7E-09 45.1 4.1 26 5-31 2-27 (154)
228 cd03247 ABCC_cytochrome_bd The 97.3 0.00027 6.8E-09 45.7 3.5 25 2-26 28-52 (178)
229 PRK10619 histidine/lysine/argi 97.3 0.00038 9.6E-09 44.8 4.3 23 2-24 31-53 (257)
230 PRK11432 fbpC ferric transport 97.3 0.0002 5.1E-09 46.4 2.9 24 2-25 32-55 (351)
231 COG1763 MobB Molybdopterin-gua 97.3 0.00082 2.1E-08 42.9 5.9 50 1-51 1-53 (161)
232 PRK13976 thymidylate kinase; P 97.2 0.00043 1.1E-08 44.5 4.5 41 4-44 2-43 (202)
233 PRK13548 hmuV hemin importer A 97.2 0.00039 1E-08 44.8 4.2 25 2-26 28-52 (257)
234 PRK13631 cbiO cobalt transport 97.2 0.00027 6.9E-09 45.7 3.4 24 2-25 52-75 (320)
235 TIGR03258 PhnT 2-aminoethylpho 97.2 0.00025 6.4E-09 45.9 3.2 23 2-24 31-53 (362)
236 PRK13544 consensus 97.2 0.0004 1E-08 44.7 4.2 26 2-27 27-52 (208)
237 PRK10908 cell division protein 97.2 0.0004 1E-08 44.7 4.3 24 2-25 28-51 (222)
238 PRK11124 artP arginine transpo 97.2 0.00028 7E-09 45.6 3.4 23 2-24 28-50 (242)
239 PRK11153 metN DL-methionine tr 97.2 0.00071 1.8E-08 43.2 5.5 49 2-62 31-81 (343)
240 cd01894 EngA1 EngA1 subfamily. 97.2 9.9E-05 2.5E-09 48.2 1.1 52 7-58 2-55 (157)
241 PRK13632 cbiO cobalt transport 97.2 0.00036 9.3E-09 44.9 4.0 25 2-26 36-60 (273)
242 PRK10575 iron-hydroxamate tran 97.2 0.00042 1.1E-08 44.6 4.3 25 2-26 37-61 (265)
243 PRK13547 hmuV hemin importer A 97.2 0.00028 7.1E-09 45.6 3.4 26 2-27 27-52 (273)
244 PRK10751 molybdopterin-guanine 97.2 0.00035 8.9E-09 45.0 3.8 50 1-51 1-53 (170)
245 PRK11650 ugpC glycerol-3-phosp 97.2 0.00026 6.5E-09 45.8 3.1 23 2-24 30-52 (358)
246 PRK10744 phosphate transporter 97.2 0.0003 7.5E-09 45.5 3.4 23 2-24 36-58 (257)
247 PRK09452 potA putrescine/sperm 97.2 0.00028 7.1E-09 45.6 3.2 24 2-25 43-66 (378)
248 cd03236 ABC_RNaseL_inhibitor_d 97.2 0.0003 7.7E-09 45.4 3.3 24 2-25 26-49 (255)
249 COG2274 SunT ABC-type bacterio 97.2 0.00052 1.3E-08 44.0 4.6 51 2-62 499-549 (709)
250 PRK11247 ssuB aliphatic sulfon 97.2 0.00027 6.9E-09 45.7 3.1 24 2-25 38-61 (257)
251 PRK13538 cytochrome c biogenes 97.2 0.00051 1.3E-08 44.1 4.5 25 2-26 27-51 (204)
252 PRK09984 phosphonate/organopho 97.2 0.00031 7.9E-09 45.4 3.3 24 2-25 30-53 (262)
253 PRK13633 cobalt transporter AT 97.2 0.00031 7.9E-09 45.4 3.3 24 2-25 37-60 (281)
254 cd03217 ABC_FeS_Assembly ABC-t 97.2 0.00031 7.9E-09 45.3 3.3 23 2-24 26-48 (200)
255 COG1127 Ttg2A ABC-type transpo 97.2 0.00069 1.8E-08 43.3 5.0 50 2-63 34-85 (263)
256 COG3842 PotA ABC-type spermidi 97.2 0.00034 8.6E-09 45.1 3.4 57 2-61 31-92 (352)
257 cd03238 ABC_UvrA The excision 97.2 0.00039 9.9E-09 44.8 3.7 27 2-28 21-47 (176)
258 cd03213 ABCG_EPDR ABCG transpo 97.2 0.00033 8.4E-09 45.2 3.3 23 2-24 35-57 (194)
259 PRK13637 cbiO cobalt transport 97.2 0.00028 7.2E-09 45.6 2.9 25 2-26 33-57 (287)
260 PRK10895 putative ABC transpor 97.2 0.00031 7.8E-09 45.4 3.1 25 2-26 29-53 (241)
261 TIGR03265 PhnT2 putative 2-ami 97.2 0.00033 8.3E-09 45.2 3.2 23 2-24 30-52 (353)
262 PRK13650 cbiO cobalt transport 97.2 0.00055 1.4E-08 43.9 4.3 25 2-26 30-54 (276)
263 PRK13640 cbiO cobalt transport 97.2 0.00033 8.4E-09 45.2 3.2 23 2-24 34-56 (283)
264 PRK13647 cbiO cobalt transport 97.2 0.00057 1.5E-08 43.8 4.4 24 2-25 31-54 (273)
265 PTZ00265 multidrug resistance 97.2 0.00054 1.4E-08 43.9 4.2 22 2-23 411-432 (1467)
266 KOG2004 consensus 97.2 0.00042 1.1E-08 44.6 3.6 45 2-49 438-484 (906)
267 TIGR00174 miaA tRNA delta(2)-i 97.2 0.00021 5.4E-09 46.3 2.1 51 4-54 1-60 (307)
268 PRK11231 fecE iron-dicitrate t 97.2 0.00057 1.5E-08 43.8 4.3 25 2-26 28-52 (255)
269 cd03216 ABC_Carb_Monos_I This 97.1 0.00071 1.8E-08 43.2 4.7 47 2-58 26-72 (163)
270 PRK13651 cobalt transporter AT 97.1 0.0004 1E-08 44.7 3.4 23 2-24 33-55 (304)
271 PRK13644 cbiO cobalt transport 97.1 0.0004 1E-08 44.7 3.4 24 2-25 28-51 (274)
272 cd03225 ABC_cobalt_CbiO_domain 97.1 0.00042 1.1E-08 44.6 3.5 24 2-25 27-50 (211)
273 PRK13641 cbiO cobalt transport 97.1 0.00055 1.4E-08 43.9 4.1 25 2-26 33-57 (286)
274 PRK13652 cbiO cobalt transport 97.1 0.00063 1.6E-08 43.5 4.4 25 2-26 30-54 (277)
275 PRK13645 cbiO cobalt transport 97.1 0.00036 9.3E-09 44.9 3.2 24 2-25 37-60 (289)
276 PRK11308 dppF dipeptide transp 97.1 0.00081 2.1E-08 42.9 4.9 23 2-24 41-63 (327)
277 cd03240 ABC_Rad50 The catalyti 97.1 0.00042 1.1E-08 44.6 3.5 23 2-24 22-44 (204)
278 PRK10418 nikD nickel transport 97.1 0.00039 9.9E-09 44.8 3.2 26 2-27 29-54 (254)
279 cd03269 ABC_putative_ATPase Th 97.1 0.00012 3.2E-09 47.6 0.7 25 2-26 26-50 (210)
280 pfam01583 APS_kinase Adenylyls 97.1 0.00048 1.2E-08 44.2 3.6 25 2-26 2-26 (157)
281 PRK05703 flhF flagellar biosyn 97.1 0.00037 9.5E-09 44.9 3.0 24 2-25 210-233 (412)
282 pfam08433 KTI12 Chromatin asso 97.1 0.00093 2.4E-08 42.6 5.0 113 4-138 1-120 (266)
283 TIGR02868 CydC ABC transporter 97.1 0.00038 9.8E-09 44.8 3.1 49 2-62 387-437 (566)
284 PRK11614 livF leucine/isoleuci 97.1 0.00079 2E-08 43.0 4.5 25 2-26 31-55 (237)
285 TIGR00630 uvra excinuclease AB 97.1 0.00027 6.9E-09 45.7 2.2 18 2-19 22-39 (956)
286 PRK11607 potG putrescine trans 97.1 0.0004 1E-08 44.7 3.1 24 2-25 45-68 (377)
287 PRK03695 vitamin B12-transport 97.1 0.00051 1.3E-08 44.1 3.5 26 2-27 23-48 (245)
288 PRK13649 cbiO cobalt transport 97.1 0.00074 1.9E-08 43.2 4.3 24 2-25 33-56 (280)
289 PRK13539 cytochrome c biogenes 97.1 0.00085 2.2E-08 42.8 4.6 26 2-27 28-53 (206)
290 cd01897 NOG NOG1 is a nucleola 97.1 0.00046 1.2E-08 44.3 3.2 54 4-58 2-57 (168)
291 PRK09544 znuC high-affinity zi 97.1 0.00083 2.1E-08 42.9 4.5 26 2-27 30-55 (251)
292 PRK13541 cytochrome c biogenes 97.1 0.00086 2.2E-08 42.7 4.5 33 2-34 26-58 (195)
293 PRK09536 btuD corrinoid ABC tr 97.1 0.00076 1.9E-08 43.1 4.2 32 2-33 28-59 (409)
294 PRK13638 cbiO cobalt transport 97.1 0.00086 2.2E-08 42.8 4.5 25 2-26 27-51 (271)
295 PRK10253 iron-enterobactin tra 97.1 0.00072 1.8E-08 43.2 4.1 25 2-26 33-57 (265)
296 PRK13636 cbiO cobalt transport 97.1 0.00083 2.1E-08 42.9 4.4 25 2-26 32-56 (285)
297 COG4619 ABC-type uncharacteriz 97.1 0.00089 2.3E-08 42.7 4.5 51 2-63 29-80 (223)
298 cd00267 ABC_ATPase ABC (ATP-bi 97.1 0.00084 2.1E-08 42.8 4.3 25 2-26 25-49 (157)
299 PRK13639 cbiO cobalt transport 97.1 0.00052 1.3E-08 44.0 3.3 24 2-25 28-51 (275)
300 TIGR00382 clpX ATP-dependent C 97.1 0.00055 1.4E-08 43.9 3.4 92 5-106 155-249 (452)
301 COG3638 ABC-type phosphate/pho 97.0 0.00052 1.3E-08 44.0 3.2 23 2-24 30-52 (258)
302 PRK00089 era GTP-binding prote 97.0 0.0004 1E-08 44.7 2.6 54 4-57 10-65 (296)
303 PRK13643 cbiO cobalt transport 97.0 0.00051 1.3E-08 44.1 3.2 24 2-25 32-55 (288)
304 PRK10535 macrolide transporter 97.0 0.0013 3.3E-08 41.8 5.2 23 2-24 34-56 (648)
305 TIGR01187 potA polyamine ABC t 97.0 0.00038 9.6E-09 44.8 2.5 119 7-135 1-138 (331)
306 PRK06217 hypothetical protein; 97.0 0.00061 1.5E-08 43.6 3.5 25 1-26 1-25 (185)
307 PRK09518 bifunctional cytidyla 97.0 0.00028 7E-09 45.6 1.7 27 2-28 4-30 (714)
308 TIGR01978 sufC FeS assembly AT 97.0 0.0011 2.8E-08 42.1 4.7 56 2-70 26-83 (248)
309 TIGR02788 VirB11 P-type DNA tr 97.0 0.00079 2E-08 43.0 4.0 33 2-34 158-190 (328)
310 KOG1969 consensus 97.0 0.0029 7.3E-08 39.7 6.8 126 2-134 326-479 (877)
311 PRK10246 exonuclease subunit S 97.0 0.00064 1.6E-08 43.5 3.4 22 2-23 30-51 (1047)
312 COG1125 OpuBA ABC-type proline 97.0 0.00049 1.2E-08 44.2 2.8 20 2-21 27-46 (309)
313 pfam00437 GSPII_E Type II/IV s 97.0 0.00073 1.9E-08 43.2 3.7 116 2-138 139-259 (283)
314 cd03222 ABC_RNaseL_inhibitor T 97.0 0.00067 1.7E-08 43.4 3.5 23 2-24 25-47 (177)
315 TIGR03410 urea_trans_UrtE urea 97.0 0.00058 1.5E-08 43.8 3.1 25 2-26 26-50 (230)
316 PRK11300 livG leucine/isoleuci 97.0 0.0011 2.8E-08 42.2 4.5 25 2-26 31-55 (255)
317 PRK00349 uvrA excinuclease ABC 97.0 0.0005 1.3E-08 44.1 2.8 18 2-19 26-43 (944)
318 PRK11144 modC molybdate transp 97.0 0.00064 1.6E-08 43.5 3.3 24 2-25 24-47 (352)
319 PRK05342 clpX ATP-dependent pr 97.0 0.0013 3.3E-08 41.7 4.8 33 4-37 111-143 (411)
320 PRK10938 putative molybdenum t 97.0 0.00097 2.5E-08 42.4 4.2 25 2-26 29-53 (490)
321 pfam10662 PduV-EutP Ethanolami 97.0 0.00051 1.3E-08 44.1 2.8 24 1-25 1-24 (143)
322 PRK10261 glutathione transport 97.0 0.0012 3.1E-08 41.8 4.7 26 2-27 42-67 (623)
323 cd00880 Era_like Era (E. coli 97.0 0.00028 7.2E-09 45.6 1.4 40 7-46 1-40 (163)
324 COG2884 FtsE Predicted ATPase 97.0 0.00072 1.8E-08 43.2 3.4 24 2-25 28-51 (223)
325 PRK10762 D-ribose transporter 97.0 0.0012 3E-08 41.9 4.5 25 2-26 30-54 (501)
326 TIGR00602 rad24 checkpoint pro 97.0 0.00066 1.7E-08 43.4 3.1 26 2-27 118-143 (670)
327 PRK05291 trmE tRNA modificatio 97.0 0.00069 1.7E-08 43.3 3.2 55 2-56 216-272 (445)
328 TIGR01351 adk adenylate kinase 97.0 0.00071 1.8E-08 43.2 3.2 28 5-32 2-29 (232)
329 PRK09700 D-allose transporter 96.9 0.0013 3.2E-08 41.8 4.5 26 2-27 31-56 (510)
330 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.9 0.0013 3.3E-08 41.7 4.5 25 2-26 26-50 (144)
331 PRK13549 xylose transporter AT 96.9 0.0008 2E-08 42.9 3.5 26 2-27 31-56 (513)
332 cd01130 VirB11-like_ATPase Typ 96.9 0.001 2.6E-08 42.4 3.9 135 2-159 25-171 (186)
333 COG0529 CysC Adenylylsulfate k 96.9 0.00087 2.2E-08 42.7 3.4 152 2-184 23-196 (197)
334 PRK10982 galactose/methyl gala 96.9 0.0015 3.9E-08 41.3 4.5 25 2-26 24-48 (491)
335 cd01673 dNK Deoxyribonucleosid 96.9 0.0012 3E-08 42.0 3.9 24 4-27 1-24 (193)
336 KOG0055 consensus 96.9 0.0015 3.9E-08 41.3 4.6 23 2-24 379-401 (1228)
337 cd03263 ABC_subfamily_A The AB 96.9 0.00092 2.4E-08 42.6 3.4 25 2-26 28-52 (220)
338 COG4618 ArpD ABC-type protease 96.9 0.0012 2.9E-08 42.0 3.9 49 2-60 362-410 (580)
339 TIGR00956 3a01205 Pleiotropic 96.9 0.00057 1.4E-08 43.8 2.3 24 2-25 853-876 (1466)
340 TIGR00618 sbcc exonuclease Sbc 96.9 0.00078 2E-08 43.0 3.0 21 3-23 31-51 (1063)
341 PRK09473 oppD oligopeptide tra 96.9 0.0009 2.3E-08 42.7 3.3 50 2-61 42-94 (330)
342 COG2019 AdkA Archaeal adenylat 96.9 0.0015 3.8E-08 41.4 4.4 26 1-26 1-28 (189)
343 pfam06414 Zeta_toxin Zeta toxi 96.9 0.00041 1E-08 44.7 1.4 121 2-136 12-139 (191)
344 cd01896 DRG The developmentall 96.9 0.00074 1.9E-08 43.1 2.7 41 5-46 3-43 (233)
345 cd01882 BMS1 Bms1. Bms1 is an 96.9 0.00099 2.5E-08 42.4 3.4 26 3-28 40-65 (225)
346 cd02027 APSK Adenosine 5'-phos 96.9 0.00088 2.2E-08 42.7 3.1 23 4-26 1-23 (149)
347 PRK00635 excinuclease ABC subu 96.9 0.00076 1.9E-08 43.1 2.7 18 2-19 961-978 (1809)
348 pfam01121 CoaE Dephospho-CoA k 96.9 0.0021 5.2E-08 40.6 4.9 48 116-164 124-178 (179)
349 PRK11022 dppD dipeptide transp 96.9 0.0009 2.3E-08 42.6 3.1 53 2-62 33-87 (327)
350 cd02019 NK Nucleoside/nucleoti 96.8 0.0015 3.8E-08 41.4 4.0 23 4-26 1-23 (69)
351 PRK11147 ABC transporter ATPas 96.8 0.0017 4.2E-08 41.1 4.2 25 2-26 29-53 (632)
352 PRK11288 araG L-arabinose tran 96.8 0.0021 5.3E-08 40.5 4.6 24 2-25 30-53 (501)
353 COG4175 ProV ABC-type proline/ 96.8 0.001 2.6E-08 42.3 3.0 77 2-88 54-139 (386)
354 cd03215 ABC_Carb_Monos_II This 96.8 0.001 2.6E-08 42.3 3.0 25 2-26 26-50 (182)
355 PRK06995 flhF flagellar biosyn 96.8 0.00098 2.5E-08 42.4 2.9 24 2-25 176-199 (404)
356 PRK13768 GTPase; Provisional 96.8 0.0014 3.6E-08 41.5 3.7 26 1-26 1-26 (253)
357 PRK00093 engA GTP-binding prot 96.8 0.00023 5.8E-09 46.1 -0.4 54 5-58 175-230 (438)
358 TIGR03594 GTPase_EngA ribosome 96.8 0.00023 5.9E-09 46.1 -0.4 56 5-60 175-232 (429)
359 PRK13546 teichoic acids export 96.8 0.0012 3.1E-08 41.9 3.3 24 2-25 50-73 (264)
360 PRK11147 ABC transporter ATPas 96.8 0.0018 4.5E-08 40.9 4.1 26 2-27 345-370 (632)
361 KOG1191 consensus 96.8 0.00096 2.4E-08 42.5 2.7 51 4-54 270-322 (531)
362 PRK10636 putative ABC transpor 96.8 0.0017 4.4E-08 41.0 4.0 24 2-25 27-50 (638)
363 cd03270 ABC_UvrA_I The excisio 96.8 0.0011 2.7E-08 42.2 2.9 21 2-22 21-41 (226)
364 COG0396 sufC Cysteine desulfur 96.8 0.0027 6.9E-08 39.9 4.9 68 2-83 30-99 (251)
365 TIGR00176 mobB molybdopterin-g 96.8 0.00066 1.7E-08 43.4 1.8 45 4-49 1-51 (165)
366 TIGR03594 GTPase_EngA ribosome 96.8 0.00083 2.1E-08 42.8 2.3 49 4-52 1-49 (429)
367 pfam02421 FeoB_N Ferrous iron 96.7 0.0012 3E-08 41.9 3.0 52 5-57 2-55 (188)
368 PRK10787 DNA-binding ATP-depen 96.7 0.0022 5.5E-08 40.4 4.4 30 2-31 349-379 (784)
369 COG1160 Predicted GTPases [Gen 96.7 0.0011 2.9E-08 42.1 2.9 87 5-100 181-269 (444)
370 COG1131 CcmA ABC-type multidru 96.7 0.0024 6.2E-08 40.1 4.6 25 2-26 31-55 (293)
371 cd01876 YihA_EngB The YihA (En 96.7 0.0012 3.1E-08 41.9 3.0 36 5-40 2-38 (170)
372 COG1618 Predicted nucleotide k 96.7 0.0031 7.9E-08 39.5 5.0 41 2-43 5-47 (179)
373 cd03266 ABC_NatA_sodium_export 96.7 0.00053 1.3E-08 44.0 1.1 25 2-26 31-55 (218)
374 cd01878 HflX HflX subfamily. 96.7 0.0019 4.9E-08 40.7 3.9 51 4-55 43-96 (204)
375 cd03267 ABC_NatA_like Similar 96.7 0.0014 3.7E-08 41.5 3.3 24 2-25 47-70 (236)
376 COG1120 FepC ABC-type cobalami 96.7 0.0015 3.9E-08 41.3 3.4 23 2-24 28-50 (258)
377 COG4107 PhnK ABC-type phosphon 96.7 0.0028 7.1E-08 39.8 4.7 66 2-76 32-97 (258)
378 cd03265 ABC_DrrA DrrA is the A 96.7 0.00055 1.4E-08 43.9 1.1 25 2-26 26-50 (220)
379 COG1117 PstB ABC-type phosphat 96.7 0.0014 3.6E-08 41.5 3.2 23 2-24 33-55 (253)
380 PRK13851 type IV secretion sys 96.7 0.002 5.2E-08 40.6 4.0 40 2-41 162-202 (343)
381 cd03268 ABC_BcrA_bacitracin_re 96.7 0.0004 1E-08 44.7 0.4 25 2-26 26-50 (208)
382 COG0283 Cmk Cytidylate kinase 96.7 0.0022 5.5E-08 40.4 4.1 28 3-30 5-32 (222)
383 pfam03215 Rad17 Rad17 cell cyc 96.7 0.0017 4.3E-08 41.0 3.5 28 3-31 46-73 (490)
384 cd03218 ABC_YhbG The ABC trans 96.7 0.0027 6.8E-08 39.9 4.5 25 2-26 26-50 (232)
385 PRK12724 flagellar biosynthesi 96.7 0.0015 3.8E-08 41.3 3.2 23 3-25 224-246 (432)
386 TIGR03598 GTPase_YsxC ribosome 96.7 0.0013 3.4E-08 41.7 2.9 36 4-40 20-57 (179)
387 COG1124 DppF ABC-type dipeptid 96.7 0.003 7.6E-08 39.6 4.7 24 2-25 33-56 (252)
388 TIGR02533 type_II_gspE general 96.7 0.0013 3.4E-08 41.7 2.9 104 4-135 247-383 (495)
389 COG0466 Lon ATP-dependent Lon 96.7 0.0026 6.6E-08 40.0 4.3 84 2-89 350-445 (782)
390 cd03230 ABC_DR_subfamily_A Thi 96.7 0.0026 6.7E-08 39.9 4.3 25 2-26 26-50 (173)
391 cd02025 PanK Pantothenate kina 96.7 0.0015 3.8E-08 41.4 3.0 21 4-24 1-21 (220)
392 PRK11819 putative ABC transpor 96.6 0.0024 6.1E-08 40.2 4.0 25 2-26 33-57 (556)
393 smart00382 AAA ATPases associa 96.6 0.0021 5.3E-08 40.5 3.7 27 2-28 2-28 (148)
394 COG1118 CysA ABC-type sulfate/ 96.6 0.0017 4.4E-08 41.0 3.3 23 2-24 28-50 (345)
395 COG0486 ThdF Predicted GTPase 96.6 0.0015 3.8E-08 41.4 2.9 39 3-41 218-256 (454)
396 KOG0057 consensus 96.6 0.0025 6.4E-08 40.0 4.1 77 2-89 378-458 (591)
397 PTZ00243 ABC transporter; Prov 96.6 0.0031 7.9E-08 39.5 4.5 32 2-33 686-717 (1560)
398 cd03219 ABC_Mj1267_LivG_branch 96.6 0.0017 4.3E-08 41.0 3.2 24 2-25 26-49 (236)
399 cd00009 AAA The AAA+ (ATPases 96.6 0.0027 6.9E-08 39.9 4.2 25 2-26 19-43 (151)
400 TIGR03015 pepcterm_ATPase puta 96.6 0.004 1E-07 38.8 5.0 25 3-27 44-68 (269)
401 TIGR03411 urea_trans_UrtD urea 96.6 0.0033 8.4E-08 39.3 4.6 24 2-25 28-51 (242)
402 PRK13900 type IV secretion sys 96.6 0.0027 7E-08 39.8 4.1 37 3-39 161-198 (332)
403 cd01898 Obg Obg subfamily. Th 96.6 0.002 5.2E-08 40.6 3.4 41 5-46 3-43 (170)
404 PRK00093 engA GTP-binding prot 96.6 0.0015 3.8E-08 41.4 2.6 54 3-56 2-57 (438)
405 PRK12723 flagellar biosynthesi 96.6 0.0034 8.6E-08 39.3 4.4 24 2-25 174-197 (388)
406 KOG1970 consensus 96.6 0.0011 2.7E-08 42.2 1.8 26 2-27 110-135 (634)
407 PRK06851 hypothetical protein; 96.6 0.0022 5.5E-08 40.4 3.4 24 2-25 31-54 (368)
408 PRK04213 GTP-binding protein; 96.6 0.0015 3.9E-08 41.3 2.5 36 4-40 3-38 (195)
409 KOG0055 consensus 96.6 0.0029 7.5E-08 39.6 4.0 26 2-27 1016-1041(1228)
410 PRK05201 hslU ATP-dependent pr 96.6 0.0027 6.9E-08 39.9 3.8 31 1-32 49-79 (442)
411 PRK13342 recombination factor 96.5 0.0038 9.6E-08 39.0 4.4 33 5-37 40-72 (417)
412 TIGR00390 hslU heat shock prot 96.5 0.002 5E-08 40.7 2.9 30 1-30 46-77 (463)
413 PRK05506 bifunctional sulfate 96.5 0.0025 6.5E-08 40.0 3.5 25 2-26 443-467 (613)
414 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.5 0.0024 6.2E-08 40.1 3.3 25 2-26 48-72 (224)
415 PRK10636 putative ABC transpor 96.5 0.0029 7.3E-08 39.7 3.7 26 2-27 338-363 (638)
416 PRK03918 chromosome segregatio 96.5 0.0022 5.6E-08 40.4 3.1 22 2-23 23-44 (882)
417 PRK13341 recombination factor 96.5 0.0041 1E-07 38.8 4.5 33 5-37 55-87 (726)
418 COG1123 ATPase components of v 96.5 0.0026 6.6E-08 40.0 3.4 23 2-24 317-339 (539)
419 cd03264 ABC_drug_resistance_li 96.5 0.0038 9.8E-08 39.0 4.3 24 2-26 26-49 (211)
420 COG0645 Predicted kinase [Gene 96.5 0.024 6E-07 34.4 8.3 147 2-170 1-165 (170)
421 cd03227 ABC_Class2 ABC-type Cl 96.5 0.0026 6.7E-08 39.9 3.4 22 2-23 21-42 (162)
422 COG1419 FlhF Flagellar GTP-bin 96.5 0.0024 6.1E-08 40.2 3.1 25 2-26 203-227 (407)
423 pfam07728 AAA_5 AAA domain (dy 96.5 0.0056 1.4E-07 38.0 4.9 23 5-27 2-24 (139)
424 PRK00454 engB GTPase EngB; Rev 96.4 0.0021 5.4E-08 40.5 2.7 34 5-39 27-62 (196)
425 COG1493 HprK Serine kinase of 96.4 0.0046 1.2E-07 38.5 4.4 25 5-29 148-172 (308)
426 cd01859 MJ1464 MJ1464. This f 96.4 0.0017 4.3E-08 41.0 2.1 35 5-39 104-138 (156)
427 COG0419 SbcC ATPase involved i 96.4 0.0033 8.4E-08 39.3 3.5 22 2-23 25-46 (908)
428 PRK09183 transposase/IS protei 96.4 0.002 5.2E-08 40.6 2.4 23 3-25 102-124 (258)
429 PRK11819 putative ABC transpor 96.4 0.0031 8E-08 39.5 3.3 26 2-27 350-375 (556)
430 PRK10938 putative molybdenum t 96.4 0.0054 1.4E-07 38.1 4.5 26 2-27 286-311 (490)
431 PRK10865 protein disaggregatio 96.4 0.003 7.6E-08 39.6 3.2 20 5-24 601-620 (857)
432 TIGR01420 pilT_fam twitching m 96.4 0.0029 7.4E-08 39.7 3.1 74 4-98 129-206 (350)
433 CHL00095 clpC Clp protease ATP 96.4 0.0031 7.8E-08 39.5 3.2 22 4-25 541-562 (823)
434 cd01131 PilT Pilus retraction 96.4 0.0038 9.6E-08 39.0 3.6 115 4-136 3-122 (198)
435 TIGR02211 LolD_lipo_ex lipopro 96.4 0.0028 7.2E-08 39.8 2.9 71 2-87 31-103 (221)
436 COG0542 clpA ATP-binding subun 96.4 0.0031 7.8E-08 39.5 3.0 22 4-25 523-544 (786)
437 cd01881 Obg_like The Obg-like 96.3 0.0014 3.6E-08 41.5 1.3 48 7-55 1-51 (176)
438 PRK13695 putative NTPase; Prov 96.3 0.0033 8.4E-08 39.3 3.2 44 4-48 5-51 (174)
439 COG4525 TauB ABC-type taurine 96.3 0.0059 1.5E-07 37.9 4.4 47 2-48 31-78 (259)
440 COG1122 CbiO ABC-type cobalt t 96.3 0.0036 9.2E-08 39.1 3.3 23 2-24 30-52 (235)
441 KOG3220 consensus 96.3 0.0064 1.6E-07 37.7 4.5 91 84-179 98-197 (225)
442 TIGR03346 chaperone_ClpB ATP-d 96.3 0.0034 8.6E-08 39.3 3.1 22 4-25 597-618 (852)
443 pfam03976 PPK2 Polyphosphate k 96.3 0.0069 1.7E-07 37.5 4.7 125 3-138 32-159 (229)
444 TIGR03420 DnaA_homol_Hda DnaA 96.3 0.004 1E-07 38.9 3.4 26 2-27 38-63 (226)
445 PTZ00265 multidrug resistance 96.3 0.0042 1.1E-07 38.8 3.5 26 2-27 1195-1220(1467)
446 TIGR02782 TrbB_P P-type conjug 96.3 0.0035 8.8E-08 39.2 3.0 86 4-93 141-238 (315)
447 TIGR03269 met_CoM_red_A2 methy 96.3 0.006 1.5E-07 37.8 4.2 26 2-27 310-335 (520)
448 PRK00349 uvrA excinuclease ABC 96.3 0.0039 9.8E-08 39.0 3.3 23 1-23 634-656 (944)
449 cd04160 Arfrp1 Arfrp1 subfamil 96.3 0.0036 9.2E-08 39.1 3.1 23 5-27 2-24 (167)
450 smart00763 AAA_PrkA PrkA AAA d 96.3 0.0044 1.1E-07 38.6 3.5 26 2-27 78-103 (361)
451 cd03116 MobB Molybdenum is an 96.3 0.0042 1.1E-07 38.8 3.3 46 3-49 2-50 (159)
452 cd04105 SR_beta Signal recogni 96.3 0.0035 9E-08 39.2 3.0 35 4-42 2-36 (203)
453 PRK00440 rfc replication facto 96.3 0.004 1E-07 38.9 3.2 24 2-26 38-61 (318)
454 TIGR03522 GldA_ABC_ATP gliding 96.3 0.0043 1.1E-07 38.7 3.4 24 2-25 28-51 (301)
455 TIGR03345 VI_ClpV1 type VI sec 96.2 0.004 1E-07 38.8 3.2 21 5-25 599-619 (852)
456 PRK09700 D-allose transporter 96.2 0.0044 1.1E-07 38.6 3.4 51 2-52 289-344 (510)
457 COG3596 Predicted GTPase [Gene 96.2 0.0058 1.5E-07 37.9 3.9 39 4-42 40-79 (296)
458 PRK03003 engA GTP-binding prot 96.2 0.0038 9.6E-08 39.0 2.8 52 4-55 40-93 (474)
459 COG4778 PhnL ABC-type phosphon 96.2 0.0051 1.3E-07 38.3 3.4 25 2-26 37-61 (235)
460 PRK00635 excinuclease ABC subu 96.2 0.0052 1.3E-07 38.2 3.4 18 2-19 26-43 (1809)
461 pfam00448 SRP54 SRP54-type pro 96.2 0.0057 1.5E-07 38.0 3.6 24 2-25 1-24 (196)
462 TIGR00929 VirB4_CagE type IV s 96.2 0.0039 9.9E-08 38.9 2.7 26 5-30 519-544 (931)
463 COG1703 ArgK Putative periplas 96.2 0.11 2.9E-06 30.4 11.6 98 3-107 52-157 (323)
464 pfam03266 DUF265 Protein of un 96.1 0.0094 2.4E-07 36.7 4.6 45 5-50 2-49 (168)
465 PRK07399 DNA polymerase III su 96.1 0.0025 6.3E-08 40.1 1.7 53 2-56 26-78 (314)
466 PRK13537 lipooligosaccharide t 96.1 0.0054 1.4E-07 38.1 3.4 24 2-25 31-54 (304)
467 COG1219 ClpX ATP-dependent pro 96.1 0.0086 2.2E-07 36.9 4.4 92 5-106 100-194 (408)
468 cd04104 p47_IIGP_like p47 (47- 96.1 0.0042 1.1E-07 38.7 2.8 37 5-41 4-44 (197)
469 PRK01156 chromosome segregatio 96.1 0.0049 1.2E-07 38.3 3.1 21 3-23 24-44 (895)
470 PRK10762 D-ribose transporter 96.1 0.0046 1.2E-07 38.5 2.9 25 2-26 278-302 (501)
471 PRK13536 nodulation factor exp 96.1 0.0057 1.4E-07 38.0 3.4 24 2-25 33-56 (306)
472 PRK11034 clpA ATP-dependent Cl 96.1 0.0053 1.3E-07 38.2 3.2 23 4-26 490-512 (758)
473 pfam05729 NACHT NACHT domain. 96.1 0.0056 1.4E-07 38.0 3.3 22 3-24 1-22 (165)
474 PRK08181 transposase; Validate 96.1 0.0038 9.7E-08 39.0 2.4 23 3-25 107-129 (269)
475 PRK13409 putative ATPase RIL; 96.1 0.0085 2.2E-07 37.0 4.1 29 2-30 99-128 (590)
476 PRK06526 transposase; Provisio 96.1 0.0035 8.9E-08 39.2 2.1 23 3-25 99-121 (254)
477 COG4987 CydC ABC-type transpor 96.1 0.008 2E-07 37.1 3.9 26 2-27 364-389 (573)
478 PRK13549 xylose transporter AT 96.0 0.0061 1.5E-07 37.8 3.2 26 2-27 288-313 (513)
479 TIGR02528 EutP ethanolamine ut 96.0 0.003 7.7E-08 39.6 1.6 86 5-121 3-90 (144)
480 PRK05416 hypothetical protein; 96.0 0.0095 2.4E-07 36.7 4.2 21 2-22 6-26 (292)
481 pfam01695 IstB IstB-like ATP b 96.0 0.0045 1.1E-07 38.6 2.5 23 3-25 48-70 (178)
482 cd01849 YlqF_related_GTPase Yl 96.0 0.0038 9.7E-08 39.0 2.1 36 5-40 103-138 (155)
483 cd01879 FeoB Ferrous iron tran 96.0 0.0022 5.5E-08 40.4 0.8 47 7-54 1-49 (158)
484 KOG0744 consensus 96.0 0.0062 1.6E-07 37.7 3.2 25 2-26 177-201 (423)
485 COG1160 Predicted GTPases [Gen 96.0 0.0091 2.3E-07 36.8 4.0 53 1-53 1-56 (444)
486 pfam09439 SRPRB Signal recogni 96.0 0.007 1.8E-07 37.4 3.4 33 4-40 5-37 (181)
487 COG4608 AppF ABC-type oligopep 96.0 0.0094 2.4E-07 36.7 4.1 34 2-35 39-72 (268)
488 COG1100 GTPase SAR1 and relate 96.0 0.0062 1.6E-07 37.7 3.1 23 4-26 7-29 (219)
489 COG1428 Deoxynucleoside kinase 96.0 0.0071 1.8E-07 37.4 3.4 25 3-27 5-29 (216)
490 pfam03668 ATP_bind_2 P-loop AT 96.0 0.0096 2.5E-07 36.6 4.0 20 3-22 2-21 (284)
491 KOG3308 consensus 96.0 0.0097 2.5E-07 36.6 4.1 30 2-31 2-33 (225)
492 pfam00004 AAA ATPase family as 96.0 0.0079 2E-07 37.1 3.6 23 5-27 1-23 (131)
493 pfam07724 AAA_2 AAA domain (Cd 96.0 0.0068 1.7E-07 37.5 3.2 23 4-26 5-27 (168)
494 COG5265 ATM1 ABC-type transpor 95.9 0.011 2.8E-07 36.3 4.3 74 1-84 288-365 (497)
495 pfam01202 SKI Shikimate kinase 95.9 0.022 5.7E-07 34.5 5.8 55 115-170 86-153 (158)
496 PRK13833 conjugal transfer pro 95.9 0.014 3.5E-07 35.8 4.6 26 2-27 144-169 (323)
497 pfam00931 NB-ARC NB-ARC domain 95.9 0.0071 1.8E-07 37.4 3.2 23 3-25 20-42 (285)
498 PRK11288 araG L-arabinose tran 95.9 0.0098 2.5E-07 36.6 3.9 25 2-26 279-303 (501)
499 TIGR02770 nickel_nikD nickel i 95.9 0.0072 1.8E-07 37.4 3.2 54 1-63 11-67 (239)
500 COG1121 ZnuC ABC-type Mn/Zn tr 95.9 0.0079 2E-07 37.1 3.4 24 2-25 30-53 (254)
No 1
>PRK00300 gmk guanylate kinase; Provisional
Probab=100.00 E-value=0 Score=401.46 Aligned_cols=181 Identities=32% Similarity=0.491 Sum_probs=169.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC-EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEE
Q ss_conf 9718999889999989999999851898-179986118889998323553000123542111027636445550486055
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSEY-LVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYG 79 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~~-~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YG 79 (185)
.|++|||+|||||||+||++.|++.+|. |.+++||||||||+||+||+||||||+++|++|+++|+|+||++|||++||
T Consensus 6 ~g~livisGPSG~GK~tl~~~L~~~~p~~~~~~vs~TTR~pR~~E~dG~dY~Fvs~eeF~~~i~~g~FlE~~~~~g~~YG 85 (208)
T PRK00300 6 RGLLIVLSAPSGAGKSTLVRALLERDPNDLQLSVSATTRAPRPGEVDGVHYHFVSREEFEEMIENGEFLEWAEVFGNYYG 85 (208)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHHCCCEEEEEECCCCEE
T ss_conf 88389999999889999999999729986899897468898998778965799619999999862836678998387035
Q ss_pred EECCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH------HC
Q ss_conf 443200233320123200243100013321055310112221332899999886303420789999999876------36
Q gi|254781197|r 80 YLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDTPFNLDPDLFGKN------HS 153 (185)
Q Consensus 80 t~~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~d~~~~i~~rl~~~~------~~ 153 (185)
||+++|++++++|++|++++|++|++++++.+++ +++|||.|||.++|++||.+||+|++++|+.|+..+. ++
T Consensus 86 T~~~~I~~~~~~G~~vildidvqGa~~lk~~~~~-~~~IFI~Pps~e~L~~RL~~Rg~es~~~I~~Rl~~A~~El~~~~~ 164 (208)
T PRK00300 86 TPREPVEEALAAGKDVLLEIDWQGAQQVKKKMPD-AVSIFILPPSLEELERRLRGRGTDSEEVIARRLEAAKEEIAHASE 164 (208)
T ss_pred CCHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCC-CEEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 2469999998569987974678999999985977-579998288999999999863899888999999999999988855
Q ss_pred CCEEEECCCHHHHHHHHHHHH--HHHHHCCC
Q ss_conf 988999397899999999999--99985236
Q gi|254781197|r 154 YSFTIVNNHLPTACRQVGFIR--EFVKQHRI 182 (185)
Q Consensus 154 fD~~IvNddle~a~~~l~~I~--e~~~~~~~ 182 (185)
|||+|+|||+++|+++|..|+ +.++.++.
T Consensus 165 fD~vIiNddl~~a~~~l~~ii~~e~~~~~~q 195 (208)
T PRK00300 165 YDYVIVNDDLETALEELKAIIRAERLRRDRQ 195 (208)
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 9999989999999999999999986026879
No 2
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=0 Score=397.17 Aligned_cols=174 Identities=30% Similarity=0.471 Sum_probs=166.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEE
Q ss_conf 97189998899999899999998518981799861188899983235530001235421110276364455504860554
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGY 80 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt 80 (185)
+|++|||+||||+||+||.+.|++.+ ++.++||+|||+||+||+||+||||||+++|++|+++|+||||++|+||||||
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT 81 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGT 81 (191)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC-CEEEEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 86399998998888899999998634-93799985267999987578024757799999987568747887771973248
Q ss_pred ECCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH------HCC
Q ss_conf 43200233320123200243100013321055310112221332899999886303420789999999876------369
Q gi|254781197|r 81 LKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDTPFNLDPDLFGKN------HSY 154 (185)
Q Consensus 81 ~~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~d~~~~i~~rl~~~~------~~f 154 (185)
++..|...+++|++|++++||+||+++|+.+| ++++|||.|||+++|++||..||+|+++.|++||.++. .+|
T Consensus 82 ~~~~ve~~~~~G~~vildId~qGa~qvk~~~p-~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl~~a~~Ei~~~~~f 160 (191)
T COG0194 82 SREPVEQALAEGKDVILDIDVQGALQVKKKMP-NAVSIFILPPSLEELERRLKGRGTDSEEVIARRLENAKKEISHADEF 160 (191)
T ss_pred CHHHHHHHHHCCCEEEEEEEHHHHHHHHHHCC-CEEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 68899999866990899985399999997499-96999975999999999997159997999999999999999888759
Q ss_pred CEEEECCCHHHHHHHHHHHHHH
Q ss_conf 8899939789999999999999
Q gi|254781197|r 155 SFTIVNNHLPTACRQVGFIREF 176 (185)
Q Consensus 155 D~~IvNddle~a~~~l~~I~e~ 176 (185)
||+|+|||+++|+++|.+|+.-
T Consensus 161 dyvivNdd~e~a~~~l~~ii~a 182 (191)
T COG0194 161 DYVIVNDDLEKALEELKSIILA 182 (191)
T ss_pred CEEEECCCHHHHHHHHHHHHHH
T ss_conf 9999895499999999999999
No 3
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=100.00 E-value=0 Score=386.44 Aligned_cols=172 Identities=33% Similarity=0.528 Sum_probs=164.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEEE
Q ss_conf 71899988999998999999985189817998611888999832355300012354211102763644555048605544
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYL 81 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt~ 81 (185)
|+||||+|||||||+||+++|++.+|++.+++||||||||+||+||+||||||+++|++|+++|+|+||+++||++||||
T Consensus 1 G~livl~GpsG~GK~tl~~~l~~~~~~~~~~vs~TTR~~R~gE~dG~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~ 80 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTP 80 (180)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEECHHHHHHHHHCCEEEEEEEECCCCCCCC
T ss_conf 93999989998899999999997689944887044689799877887347850899999986496488767716763574
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH------HHCCC
Q ss_conf 320023332012320024310001332105531011222133289999988630342078999999987------63698
Q gi|254781197|r 82 KEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDTPFNLDPDLFGK------NHSYS 155 (185)
Q Consensus 82 ~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~d~~~~i~~rl~~~------~~~fD 155 (185)
+++|+.++++|++|++++|++|++++++.++ ++++|||.|||.++|++||.+||+|++++|++|+.++ .++||
T Consensus 81 ~~~i~~~~~~gk~vil~id~~G~~~lk~~~~-~~~~IfI~pps~~~L~~RL~~Rg~e~~~~i~~Rl~~a~~E~~~~~~fD 159 (180)
T TIGR03263 81 KSPVEEALAAGKDVLLEIDVQGARQVKKKFP-DAVSIFILPPSLEELERRLRKRGTDSEEVIERRLAKAKKEIAHADEFD 159 (180)
T ss_pred HHHHHHHHHHCCCEEEECCHHHHHHHHHHCC-CEEEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 7999999960998999878999999997588-648999968899999999996489998999999999999998774399
Q ss_pred EEEECCCHHHHHHHHHHHH
Q ss_conf 8999397899999999999
Q gi|254781197|r 156 FTIVNNHLPTACRQVGFIR 174 (185)
Q Consensus 156 ~~IvNddle~a~~~l~~I~ 174 (185)
++|+|||+++|+++|..|+
T Consensus 160 ~vIvNddle~a~~~l~~ii 178 (180)
T TIGR03263 160 YVIVNDDLEKAVEELKSII 178 (180)
T ss_pred EEEECCCHHHHHHHHHHHH
T ss_conf 9998979999999999997
No 4
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=100.00 E-value=0 Score=366.06 Aligned_cols=173 Identities=29% Similarity=0.400 Sum_probs=163.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEE
Q ss_conf 71899988999998999999985189-81799861188899983235530001235421110276364455504860554
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE-YLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGY 80 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~-~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt 80 (185)
-|+|||+|||||||+||+++|++..| .|.+++||||||||+||+||+||||||+++|++|+++|+|+||++++|++|||
T Consensus 1 ~klivl~GPSG~GK~tl~~~L~~~~~~~~~~~vs~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt 80 (182)
T pfam00625 1 RRPIVLSGPSGVGKSHIKKALLDEYPEKFGYSVSHTTRPPRPGEVDGKDYHFVSKEEMENDISANEFLEHAEFNGNYYGT 80 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 98699989899999999999998486673445765547999878789657996589999987543777626407972564
Q ss_pred ECCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH------HCC
Q ss_conf 43200233320123200243100013321055310112221332899999886303420789999999876------369
Q gi|254781197|r 81 LKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDTPFNLDPDLFGKN------HSY 154 (185)
Q Consensus 81 ~~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~d~~~~i~~rl~~~~------~~f 154 (185)
++++|+.++++|++|++++|++|++++++.++ ++++|||.|||.++|++||.+||.+++++|++|+.++. ..|
T Consensus 81 ~~~~I~~~~~~g~~vvl~id~~g~~~lk~~~~-~~~~IfI~pps~~~L~~RL~~Rg~~~~~~i~~Rl~~a~~e~~~~~~f 159 (182)
T pfam00625 81 SKEAIEQIAESGKICILDVDIQGVKQLRKAEL-SPISVFIKPPSLKVLQRRLKGRGTEQEEKINKRMEAAEQEFQHYAEF 159 (182)
T ss_pred CHHHHHHHHHCCCEEEEEECHHHHHHHHHHCC-CCEEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 02777999867996999972899999987495-74899993879999999998148888999999999999997348619
Q ss_pred CEEEECCCHHHHHHHHHHHHH
Q ss_conf 889993978999999999999
Q gi|254781197|r 155 SFTIVNNHLPTACRQVGFIRE 175 (185)
Q Consensus 155 D~~IvNddle~a~~~l~~I~e 175 (185)
||+|+|||||+|+++|.+|++
T Consensus 160 D~vIvNddle~a~~~l~~ii~ 180 (182)
T pfam00625 160 DYIIVNDDLDEAYKKLKEILE 180 (182)
T ss_pred CEEEECCCHHHHHHHHHHHHH
T ss_conf 999989899999999999997
No 5
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=100.00 E-value=0 Score=355.22 Aligned_cols=175 Identities=34% Similarity=0.464 Sum_probs=164.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEE
Q ss_conf 71899988999998999999985189-81799861188899983235530001235421110276364455504860554
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE-YLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGY 80 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~-~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt 80 (185)
.|+|||+|||||||+||++.|++..| .|.+++||||||||+||+||+||||||+++|++|+++|+|+||++++|++|||
T Consensus 2 ~r~iil~Gpsg~GK~tl~~~l~~~~~~~~~~~v~~TTR~~r~gE~~G~dY~Fvs~~~F~~~i~~~~flE~~~~~g~~YGt 81 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT 81 (184)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHCCHHHHHHHHCCCCCCC
T ss_conf 97799999999999999999986396450577876727998899999636997179999998727417888747877541
Q ss_pred ECCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH------HCC
Q ss_conf 43200233320123200243100013321055310112221332899999886303420789999999876------369
Q gi|254781197|r 81 LKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDTPFNLDPDLFGKN------HSY 154 (185)
Q Consensus 81 ~~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~d~~~~i~~rl~~~~------~~f 154 (185)
++++|+.++++|++|++++|++|+.+|++.++ ++++|||.|||.++|++||..||.++++++++|+.++. +.|
T Consensus 82 ~~~~I~~~~~~g~~~ildi~~~g~~~l~~~~~-~~~~Ifi~pps~e~L~~RL~~Rg~~~~~~i~~Rl~~a~~e~~~~~~f 160 (184)
T smart00072 82 SKETIRQVAEQGKHCLLDIDPQGVKQLRKAQL-YPIVIFIAPPSSEELERRLRGRGTETAERIQKRLAAAQKEAQEYHLF 160 (184)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHHHHHHHHCC-CCEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 06789998726986999962999999998588-80799993899999999997169999999999999999999647339
Q ss_pred CEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 88999397899999999999999
Q gi|254781197|r 155 SFTIVNNHLPTACRQVGFIREFV 177 (185)
Q Consensus 155 D~~IvNddle~a~~~l~~I~e~~ 177 (185)
||+|+|+|+++|+++|..|++..
T Consensus 161 d~vIvN~dl~~a~~~l~~iI~~e 183 (184)
T smart00072 161 DYVIVNDDLEDAYEELKEILEAE 183 (184)
T ss_pred CEEEECCCHHHHHHHHHHHHHHC
T ss_conf 99998989999999999999855
No 6
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=100.00 E-value=0 Score=325.44 Aligned_cols=176 Identities=18% Similarity=0.219 Sum_probs=159.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEE
Q ss_conf 97189998899999899999998518-98179986118889998323553000123542111027636445550486055
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNS-EYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYG 79 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~-~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YG 79 (185)
||++|||+|||||||+||++.|++.. +.+.+++|+||||++.| |+||||||+++|++|+++|.|+|||++||+|||
T Consensus 1 mG~LivvsgPSGaGK~Tli~~l~~~~~~~~~~s~s~tTRp~e~~---g~dy~fvs~eeF~~~i~~g~F~~~w~~~g~~YG 77 (184)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAG---SENHIALSEQEFFTRAGQNLFALSWHANGLYYG 77 (184)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCC---CCCCEECCHHHHHHHHHCCCEEEEEEECCCCCC
T ss_conf 97099998998699999999998448998899987237899999---968288799999999977982999986695667
Q ss_pred EECCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH--CCCEE
Q ss_conf 4432002333201232002431000133210553101122213328999998863034207899999998763--69889
Q gi|254781197|r 80 YLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDTPFNLDPDLFGKNH--SYSFT 157 (185)
Q Consensus 80 t~~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~d~~~~i~~rl~~~~~--~fD~~ 157 (185)
|+. +|+..+..|++++++++++|+.++++.+++.. .+|+.|||.++|++||.+||+|++++|++||..+.+ .||++
T Consensus 78 ~~~-~v~~~l~~G~dVi~~g~~~~~~~~~~~~~~~~-~~~~i~ps~~~L~~RL~~RGtEs~e~I~~RL~~A~~~~~~d~~ 155 (184)
T PRK10078 78 VGI-EIDLWLHAGFDVVVNGSRAHLPQARARYQSAL-LPVCLQVSPEILRQRLENRGRENASEINARLARAARYQPQDCH 155 (184)
T ss_pred CCH-HHHHHHHCCCEEEEECHHHHHHHHHHHCCCCE-EEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEE
T ss_conf 078-99999974994999517989999998679858-9999579999999999972999999999999961215788999
Q ss_pred EECCC--HHHHHHHHHHHHHHHHHCC
Q ss_conf 99397--8999999999999998523
Q gi|254781197|r 158 IVNNH--LPTACRQVGFIREFVKQHR 181 (185)
Q Consensus 158 IvNdd--le~a~~~l~~I~e~~~~~~ 181 (185)
|+||| +++|+++|.+|+...++|+
T Consensus 156 vInnDg~le~av~~l~~ii~~~~~~~ 181 (184)
T PRK10078 156 TLNNDGSLRQSVDTLLTLLHQKEKHH 181 (184)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 99899889999999999999987403
No 7
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=100.00 E-value=0 Score=292.43 Aligned_cols=130 Identities=32% Similarity=0.538 Sum_probs=122.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEEEC
Q ss_conf 899988999998999999985189-8179986118889998323553000123542111027636445550486055443
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSE-YLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLK 82 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~-~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt~~ 82 (185)
||||+|||||||+||+++|++..+ .|.+++||||||||+||+||+||||||+++|++|+++|+|+||++++|++|||++
T Consensus 1 livi~GPSG~GK~tl~~~L~~~~~~~~~~~vs~TTR~~r~~E~~G~dY~Fvs~~~F~~~i~~g~f~E~~~~~g~~YGt~~ 80 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK 80 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHCCEEEEEEEECCCCCCCCH
T ss_conf 99999999889999999998519877687566037899888778967898679999999866914999999880662789
Q ss_pred CCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHH
Q ss_conf 2002333201232002431000133210553101122213328999998863
Q gi|254781197|r 83 EDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIK 134 (185)
Q Consensus 83 ~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~ 134 (185)
++|.+.+++|++|++++|++|++++|+.++ ++++|||.|||.+.+..||.+
T Consensus 81 ~~I~~~~~~G~~vil~id~~g~~~lk~~~~-~~~~IFI~PP~~~i~~~~~~~ 131 (137)
T cd00071 81 AAVEEALAEGKIVILEIDVQGARQVKKSYP-DAVSIFILPPDYVIVNDDLEK 131 (137)
T ss_pred HHHHHHHHCCCEEEEEEEHHHHHHHHHCCC-CEEEEEEECCCHHHHHHHHHH
T ss_conf 999999963994999974899999997099-819999979096899999999
No 8
>KOG0609 consensus
Probab=100.00 E-value=1.4e-45 Score=287.21 Aligned_cols=183 Identities=27% Similarity=0.377 Sum_probs=159.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEE
Q ss_conf 71899988999998999999985189-81799861188899983235530001235421110276364455504860554
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE-YLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGY 80 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~-~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt 80 (185)
.|.+||+||+|+|...|.+.|+...| .|..+|+|||||||++|+||++|||||+++|+.++.+|+|+||++|.|++|||
T Consensus 340 rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FVSk~~~e~dI~~~~~lE~GEy~~nlYGT 419 (542)
T KOG0609 340 RRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFVSKEEMEADIRAGKFLEYGEYEGNLYGT 419 (542)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCEECCCCHHCCCCC
T ss_conf 53289977766366999999986386555667877677988777798542351048776556518855247502020666
Q ss_pred ECCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCC-------CCCHHHHH------HHH
Q ss_conf 43200233320123200243100013321055310112221332899999886303-------42078999------999
Q gi|254781197|r 81 LKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRR-------EDTPFNLD------PDL 147 (185)
Q Consensus 81 ~~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~-------~d~~~~i~------~rl 147 (185)
+.++|..++.+|++|+|++.++..+.|+.. .+.|++|||.||+.+++++-...-. ...+++++ .++
T Consensus 420 s~dsVr~v~~~gKicvLdv~Pqalk~lRt~-Ef~PyVIFI~pP~~~~~r~~r~~~~~~~~~~~~~~d~~Lq~i~~eS~~i 498 (542)
T KOG0609 420 SLDSVRNVIASGKICVLDVEPQALKVLRTA-EFKPYVIFIAPPSLEELRALRKVAVMSTIVAKQFTDEDLQEIIDESARI 498 (542)
T ss_pred HHHHHHHHHHHCCEEEEECCHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 089999999738778874477775323330-3564499835997066788765303566545457879999999999999
Q ss_pred -HHHHHCCCEEEECCCHHHHHHHHHHHHHHHH-HCCCCCC
Q ss_conf -9876369889993978999999999999998-5236489
Q gi|254781197|r 148 -FGKNHSYSFTIVNNHLPTACRQVGFIREFVK-QHRIIKI 185 (185)
Q Consensus 148 -~~~~~~fD~~IvNddle~a~~~l~~I~e~~~-~~~~~~~ 185 (185)
..+.|.||.+|+|+|++.|+++|..+++.++ .-+|||+
T Consensus 499 e~~yghyfD~iIvN~dld~t~~eL~~~iekl~tepqWVPv 538 (542)
T KOG0609 499 EQQYGHYFDLIIVNSDLDKTFRELKTAIEKLRTEPQWVPV 538 (542)
T ss_pred HHHHHHHEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 9873000238997474788999999999974048835111
No 9
>KOG0707 consensus
Probab=100.00 E-value=4.4e-43 Score=272.01 Aligned_cols=171 Identities=27% Similarity=0.361 Sum_probs=161.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC-EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEEE
Q ss_conf 18999889999989999999851898-17998611888999832355300012354211102763644555048605544
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQVVLNSEY-LVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYL 81 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L~~~~~~-~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt~ 81 (185)
+-+||+||||+||+|+.++|++.++. |.++||||||+||++|+||+||||++.++|+.|++.++|+||+.++|++|||+
T Consensus 38 ~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~yGts 117 (231)
T KOG0707 38 KPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNKYGTS 117 (231)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 52798588775435799999987377613774577789986011677443336789998860002556666436657722
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHC--------
Q ss_conf 320023332012320024310001332105531011222133289999988630342078999999987636--------
Q gi|254781197|r 82 KEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDTPFNLDPDLFGKNHS-------- 153 (185)
Q Consensus 82 ~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~d~~~~i~~rl~~~~~~-------- 153 (185)
++++......|+.|+++||.+|++.++.. ..+++.||+.||+...+++||..||+|+++++.+|+.++..+
T Consensus 118 i~av~~~~~~gk~~ildId~qg~~~i~~~-~~~~i~i~~~pps~~~~e~rl~~rgte~~~~l~~r~~sa~~e~~~~~~~g 196 (231)
T KOG0707 118 IAAVQRLMLSGKVCILDIDLQGVQPIRAT-SLDAIYIFIKPPSIKILEERLRARGTETEESLLKRLKSAEEEFEILENSG 196 (231)
T ss_pred HHHHHHHHHCCCCCEEEHHHCCCEEEECC-CCCEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999997359820310222071332058-87657898228860158887541474019999999886565320234776
Q ss_pred -CCEEEEC-CCHHHHHHHHHHHH
Q ss_conf -9889993-97899999999999
Q gi|254781197|r 154 -YSFTIVN-NHLPTACRQVGFIR 174 (185)
Q Consensus 154 -fD~~IvN-ddle~a~~~l~~I~ 174 (185)
||++++| +++++|++++..++
T Consensus 197 ~~d~~~~ns~~lee~~kel~~~~ 219 (231)
T KOG0707 197 SFDLVIVNSDRLEEAYKELEIFI 219 (231)
T ss_pred CCCCEECCCCCHHHHHHHHHHHH
T ss_conf 34521217886245455543234
No 10
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; InterPro: IPR012699 Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds , including phosphites as well as phosphonates. PhnN in Escherichia coli shows considerable homology to guanylate kinases (2.7.4.8 from EC), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP..
Probab=99.97 E-value=1.9e-31 Score=204.20 Aligned_cols=167 Identities=19% Similarity=0.212 Sum_probs=139.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH---CCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEE
Q ss_conf 718999889999989999999851---89817998611888999832355300012354211102763644555048605
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN---SEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYY 78 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~---~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~Y 78 (185)
|++|+++||||||||||+....+. .|.+.|+-.|.|||.-.| |+|+-=+|.+||..+...|.|.=+|+.||.+|
T Consensus 1 G~li~vvGPSGaGKDtLl~~AR~~l~~~~r~~F~rRvITR~a~Ag---gEnH~Als~~EF~~~~~~G~FAl~W~AHGL~Y 77 (183)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPADAG---GENHDALSTEEFDAREDGGAFALSWQAHGLSY 77 (183)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCC---CCCCCCCCHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 937899707788677899999997048996588312774375224---66764047789999971898189861367435
Q ss_pred EEECCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH-------
Q ss_conf 5443200233320123200243100013321055310112221332899999886303420789999999876-------
Q gi|254781197|r 79 GYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDTPFNLDPDLFGKN------- 151 (185)
Q Consensus 79 Gt~~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~d~~~~i~~rl~~~~------- 151 (185)
|++. +|+.++.+|.+||.+..=.-..+++..|+ +..+|.|++ +.++|++||..||+|+.++|++||....
T Consensus 78 GiP~-eid~wL~~G~~Vv~NGSRa~Lp~ar~rYp-~L~~V~Ita-~~dVLa~RL~~RgRE~~~~I~~RL~Rs~~~~~dll 154 (183)
T TIGR02322 78 GIPV-EIDQWLEAGDVVVVNGSRAVLPEARQRYP-NLLVVNITA-SPDVLAQRLAARGRESAEEIEERLARSARFAGDLL 154 (183)
T ss_pred CCCH-HHHHHHHCCCEEEEECHHHHHHHHHHHHH-CCEEEEEEC-CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHH
T ss_conf 7830-37878754998999752889999987432-460278745-81289999997589898899999887753110220
Q ss_pred -HCCCEE-EECC-CHHHHHHHHHHHH
Q ss_conf -369889-9939-7899999999999
Q gi|254781197|r 152 -HSYSFT-IVNN-HLPTACRQVGFIR 174 (185)
Q Consensus 152 -~~fD~~-IvNd-dle~a~~~l~~I~ 174 (185)
..+|.+ |.|+ .++.|.+.|-.++
T Consensus 155 ~~~~dv~~i~NsG~~~~ag~~L~~ll 180 (183)
T TIGR02322 155 LEPADVTTIDNSGSLEVAGETLLRLL 180 (183)
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf 05987279846802789999999998
No 11
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.3e-26 Score=175.88 Aligned_cols=169 Identities=20% Similarity=0.228 Sum_probs=136.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH---CCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCE
Q ss_conf 9718999889999989999999851---8981799861188899983235530001235421110276364455504860
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLN---SEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEY 77 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~---~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~ 77 (185)
||++|+++||||+|||||+..+... .+.+.++-.+.|||.-+| |.|+--+|+.+|.++..+|.|.-+|+.||.+
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag---~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~ 80 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAG---GEDHDALSEAEFNTRAGQGAFALSWQAHGLS 80 (192)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC---CCCCCCCCHHHHHHHHHCCCEEEEEHHCCCC
T ss_conf 7549999888877767799999987266874599999864667777---6554345889999885357626773104822
Q ss_pred EEEECCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH----C
Q ss_conf 554432002333201232002431000133210553101122213328999998863034207899999998763----6
Q gi|254781197|r 78 YGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDTPFNLDPDLFGKNH----S 153 (185)
Q Consensus 78 YGt~~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~d~~~~i~~rl~~~~~----~ 153 (185)
||++. +|+.++..|.+++.+..-.-.-+++..|+ ...+|-|.+ +.++|.+||..||+|+.++|..|+..... .
T Consensus 81 Ygip~-eId~wl~~G~vvl~NgSRa~Lp~arrry~-~Llvv~ita-~p~VLaqRL~~RGREs~eeI~aRL~R~a~~~~~~ 157 (192)
T COG3709 81 YGIPA-EIDLWLAAGDVVLVNGSRAVLPQARRRYP-QLLVVCITA-SPEVLAQRLAERGRESREEILARLARAARYTAGP 157 (192)
T ss_pred CCCCH-HHHHHHHCCCEEEEECCHHHHHHHHHHHH-CCEEEEEEC-CHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 25716-59999857988998262766088998600-323699724-8789999999865479999999997514343589
Q ss_pred CCEEEE-CC-CHHHHHHHHHHHHH
Q ss_conf 988999-39-78999999999999
Q gi|254781197|r 154 YSFTIV-NN-HLPTACRQVGFIRE 175 (185)
Q Consensus 154 fD~~Iv-Nd-dle~a~~~l~~I~e 175 (185)
.|.+.+ |+ +++.|.+++...+.
T Consensus 158 ~dv~~idNsG~l~~ag~~ll~~l~ 181 (192)
T COG3709 158 GDVTTIDNSGELEDAGERLLALLH 181 (192)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 986897389867789999999997
No 12
>KOG0708 consensus
Probab=99.72 E-value=3e-17 Score=121.28 Aligned_cols=164 Identities=16% Similarity=0.145 Sum_probs=129.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEEE
Q ss_conf 1899988999998999999985189-817998611888999832355300012354211102763644555048605544
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQVVLNSE-YLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYL 81 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L~~~~~-~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt~ 81 (185)
+-++|.||- |+-|.+.|+..+| .|...++|||||. +++|++.++.+.|+++.+++|++|||+
T Consensus 188 RPVlilg~~---~d~l~~~Lv~e~~~kF~~C~~~t~~~~--------------~~eme~~~k~~~fI~~~q~~~~~~~ts 250 (359)
T KOG0708 188 RPVLILGPL---LDRLLDNLVNEFPDKFKSCLPETLRPS--------------REEMERDSKEETFIDAGQRSNGLYGTS 250 (359)
T ss_pred CCEEECCCH---HHHHHHHHHHHHHCCCCCCCHHHHCCC--------------HHHHHHHCCCCCEEEECCCCCCCCEEH
T ss_conf 726750426---899999998742010240516650600--------------887623124575121033479732235
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC----EE
Q ss_conf 32002333201232002431000133210553101122213328999998863034207899999998763698----89
Q gi|254781197|r 82 KEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDTPFNLDPDLFGKNHSYS----FT 157 (185)
Q Consensus 82 ~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~d~~~~i~~rl~~~~~~fD----~~ 157 (185)
..+|.++.++|++|||++..++.+.|... ...|++|||.|-|.+.++.+-.++-.+..++.-.|-...+.+|+ .+
T Consensus 251 v~si~~va~k~~HCiLdv~~~ai~rLq~~-~IyPIvIfIr~ks~~~i~e~~~~~t~~~ake~~e~a~klEqe~~~~~t~v 329 (359)
T KOG0708 251 VASIREVAEKGKHCLLDVGGDAIRRLQRN-QIYPIVIFIRVKSKKQIKERNLKITGEQAKELLERARKLEQELDRYFTLV 329 (359)
T ss_pred HHHHHHHHCCCCCEEEECCCCHHHHHHHC-CEECEEEEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCEEEE
T ss_conf 88799986279862774273458788866-51036999972327889987613566889999999997676562061799
Q ss_pred EECCCHHHHHHHHHHHHHHH-HHCCCCC
Q ss_conf 99397899999999999999-8523648
Q gi|254781197|r 158 IVNNHLPTACRQVGFIREFV-KQHRIIK 184 (185)
Q Consensus 158 IvNddle~a~~~l~~I~e~~-~~~~~~~ 184 (185)
|--+.++..+.+++.+++.. ++--|||
T Consensus 330 v~~~s~e~i~~qvk~~I~~Eq~k~iWVp 357 (359)
T KOG0708 330 VQGGSLEELLSQVKDIIEDEQKKVIWVP 357 (359)
T ss_pred EECCCHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 8255479999999999987428757444
No 13
>PRK08356 hypothetical protein; Provisional
Probab=98.89 E-value=2.6e-09 Score=74.99 Aligned_cols=159 Identities=16% Similarity=0.223 Sum_probs=79.1
Q ss_pred CCCEEE-EECCCCCCHHHHHHHHHHHCCCEEE-EEEECCCCCCCCCCCCCCCCC---------CCHHHHHHHCCCCEEEE
Q ss_conf 971899-9889999989999999851898179-986118889998323553000---------12354211102763644
Q gi|254781197|r 1 MAHIFV-LIGASGVGETTIAKQVVLNSEYLVM-PVGVTTRRPRVDEKQYIDYRF---------ISQSQFKGWKHTGLFIE 69 (185)
Q Consensus 1 m~kiiv-i~GpSGsGK~tl~~~L~~~~~~~~~-~is~TTR~~R~~E~~g~dY~F---------vs~e~F~~~i~~g~flE 69 (185)
|+|+|| |+|..||||+|+++.| ++. +|.. +-+-.=|.. -..+..+|.+ .|++.+.+. +..+
T Consensus 3 ~~kmIIgitG~~gSGK~tva~~l-~~~-G~~~~s~sd~lrd~--~~~~~~~~~~~~e~~~~~e~tre~l~~~---~~~L- 74 (195)
T PRK08356 3 VEKMIVGIAGKIAAGKTTVAKFL-EEL-GFCRISCSEPLIDI--LTGNVSDYSWVPEVPFKGEPTRENLIEL---GRYL- 74 (195)
T ss_pred CCEEEEEEECCCCCCHHHHHHHH-HHC-CCEEEECCHHHHHH--HHCCCCCCCCHHHHHHCCCCCHHHHHHH---HHHH-
T ss_conf 75269998589988789999999-986-99288422789999--8402320001155551479988999999---9999-
Q ss_pred EEEECCCEEEEECCCHHHHHHHCCCCCCCCCCCCHH------HHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHH--
Q ss_conf 555048605544320023332012320024310001------332105531011222133289999988630342078--
Q gi|254781197|r 70 TTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLA------PLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDTPF-- 141 (185)
Q Consensus 70 ~~~~~g~~YGt~~~~i~~~~~~g~~~il~id~~G~~------~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~d~~~-- 141 (185)
-+-+|.-+- .+..++ .+..++.+++ .|++ .+++. +. ..|.|.+| .+.--+||..|+...+.
T Consensus 75 -R~~~G~~i~-a~~~~~-~i~~~~~vVI----dgiR~~~Eve~lk~~-~~--~lI~V~A~-~~~R~eRl~~Rgr~~D~~~ 143 (195)
T PRK08356 75 -KEKYGEDIL-IRLAVD-KLRHCKNIAI----DGVRSRGEVEAIKRM-GG--KVIYVEAK-PEIRFERLRRRGAEKDRGI 143 (195)
T ss_pred -HHHHCCHHH-HHHHHH-HHHCCCCEEE----ECCCCHHHHHHHHHC-CC--EEEEEECC-HHHHHHHHHHCCCCCCCCC
T ss_conf -998692589-999999-9744897899----489988999999965-99--79999677-8789999997689888650
Q ss_pred ----HHHHHH-HH--------HHHCCCEEEECC-CHHHHHHHHHHHHHHHH
Q ss_conf ----999999-98--------763698899939-78999999999999998
Q gi|254781197|r 142 ----NLDPDL-FG--------KNHSYSFTIVNN-HLPTACRQVGFIREFVK 178 (185)
Q Consensus 142 ----~i~~rl-~~--------~~~~fD~~IvNd-dle~a~~~l~~I~e~~~ 178 (185)
+...+- .. .....||+|+|+ ++++-.+++..|+..++
T Consensus 144 ~s~e~fl~~d~~e~~~~~~~~~i~~ADy~I~N~gtleel~~~i~~il~~i~ 194 (195)
T PRK08356 144 KSLEDLLKFDEWEEKLYQTTKLKDKADYVIVNEGTLEELRKKVEEILRELK 194 (195)
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 429999986488886048788998799999829989999999999999833
No 14
>PRK08233 hypothetical protein; Provisional
Probab=98.79 E-value=5.5e-08 Score=67.25 Aligned_cols=153 Identities=16% Similarity=0.246 Sum_probs=76.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCC-CCHHHHHHHCCCC-EEEEEEEECCCEEE
Q ss_conf 718999889999989999999851898179986118889998323553000-1235421110276-36445550486055
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRF-ISQSQFKGWKHTG-LFIETTKVRDEYYG 79 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~F-vs~e~F~~~i~~g-~flE~~~~~g~~YG 79 (185)
..+|-|+|+|||||||++++|.+..+.-.. .+. . +|+| .+++.+......+ .| ..+--
T Consensus 3 p~IIgIaGgSgSGKTtla~~l~~~l~~~~~-~~~-----------D-~y~~~~~~~~~~~~~~~~~~~-------d~~d~ 62 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKA-LYF-----------D-RYDFDNCPEDICKWIDDGANY-------SEWVL 62 (182)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEE-EEE-----------C-CCCCCCCHHHHHHHHCCCCCC-------CHHHH
T ss_conf 889999688867899999999997467758-996-----------6-655546878899874067786-------66669
Q ss_pred E-ECCCHHHHHHHCCCC-CCCCCCCCHH-----HHHHCCCCCHHHHHHCCCCHHHHHHHHHH----C-CCCCHHHHHHHH
Q ss_conf 4-432002333201232-0024310001-----33210553101122213328999998863----0-342078999999
Q gi|254781197|r 80 Y-LKEDINNPMEHGYDI-LLILTHQGLA-----PLKKLYEDQVTSIFIAPPSEAELIQRRIK----R-REDTPFNLDPDL 147 (185)
Q Consensus 80 t-~~~~i~~~~~~g~~~-il~id~~G~~-----~lk~~~~~~~~~IfI~pps~~~L~~RL~~----R-~~d~~~~i~~rl 147 (185)
. ....+.+ +.+|..+ ++. ++|.. .|++... +.|||.+|....|.+|+.+ | |++-+..+.+-+
T Consensus 63 ~~l~~~l~~-l~~~~~~d~iI--vEgil~l~~~~lr~l~D---~kIfVdtp~Dirl~RRi~RDi~Er~gr~i~svl~qY~ 136 (182)
T PRK08233 63 TPLIKDIQE-LIAKSNVDYII--VDYPFAYLNSEMRQYID---VTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYL 136 (182)
T ss_pred HHHHHHHHH-HHCCCCCCEEE--EEEEHHHCCHHHHHHHC---EEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 999999999-85599872899--96443626898997718---7899728689999998888877761887899999999
Q ss_pred HH---HH--------HCCCEEEECC-CHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 98---76--------3698899939-7899999999999999852364
Q gi|254781197|r 148 FG---KN--------HSYSFTIVNN-HLPTACRQVGFIREFVKQHRII 183 (185)
Q Consensus 148 ~~---~~--------~~fD~~IvNd-dle~a~~~l~~I~e~~~~~~~~ 183 (185)
.. +. ..-|.+|.|. -++..++ .|.+.+.++.++
T Consensus 137 ~~VrPm~~~fvePsk~~ADiIId~~~aid~i~~---~i~~~l~~~~~~ 181 (182)
T PRK08233 137 NYARPLYLEALDTVKPNADIVLDGALSVEEIIN---QIEEELYRREVI 181 (182)
T ss_pred HHHHHHHHHHHCHHHHCCCEEEECCCCHHHHHH---HHHHHHHHCCCC
T ss_conf 987889999857003219689858607999999---999999745246
No 15
>PRK05480 uridine kinase; Provisional
Probab=98.75 E-value=1.3e-07 Score=65.08 Aligned_cols=166 Identities=19% Similarity=0.190 Sum_probs=79.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEE-EEEEE----CCCCCCCCCCCCCCCCCCCHHHHH--------HHCCCCEEEEE
Q ss_conf 899988999998999999985189817-99861----188899983235530001235421--------11027636445
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLV-MPVGV----TTRRPRVDEKQYIDYRFISQSQFK--------GWKHTGLFIET 70 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~-~~is~----TTR~~R~~E~~g~dY~Fvs~e~F~--------~~i~~g~flE~ 70 (185)
+|-|+|+|||||||+++.|.+..+.-. .++|. -.+.-.+.+..+ .+.|=..+.|+ +.+++|+=++.
T Consensus 8 iIgIaG~SgSGKTT~a~~L~~~l~~~~v~vi~~D~Yy~~~~~~~~~e~~-~~nfD~P~a~d~~ll~~~L~~L~~G~~v~~ 86 (209)
T PRK05480 8 IIGIAGGSGSGKTTVASTIYEELGDESIAVISQDSYYKDQSHLSMEERV-KTNYDHPDAFDHDLLIEHLKALKAGKAIEI 86 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHC-CCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9999899977899999999998086875999554412473407886812-368788267669999999999974998756
Q ss_pred EEECCCEEEEECCCHHHHHHHCCCCCCCCCCCCHHH-----HHHCCCCCHHHHHHCCCCHHHHHHHHH----HCCCCCHH
Q ss_conf 550486055443200233320123200243100013-----321055310112221332899999886----30342078
Q gi|254781197|r 71 TKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAP-----LKKLYEDQVTSIFIAPPSEAELIQRRI----KRREDTPF 141 (185)
Q Consensus 71 ~~~~g~~YGt~~~~i~~~~~~g~~~il~id~~G~~~-----lk~~~~~~~~~IfI~pps~~~L~~RL~----~R~~d~~~ 141 (185)
-. +++.=|+.... ...+....++| ++|... ++..+. +.|||.+|....|.+|+. .||.+-+.
T Consensus 87 P~-Ydf~t~~r~~~-~~~i~~~~iiI----vEGi~~l~~~~lr~~~D---lkIfid~~~d~rl~RRi~RD~~eRGr~~e~ 157 (209)
T PRK05480 87 PV-YDYTEHTRSKE-TIHVEPKDVII----LEGILLLEDERLRDLMD---IKIFVDTPLDIRLIRRLKRDVNERGRSLES 157 (209)
T ss_pred CC-CCCCCCCCCCC-EEEECCCCEEE----EECHHHCCCHHHHHHHC---EEEEEECCHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 75-44556655786-38966987699----93456406787886526---579996677789999999789997889999
Q ss_pred HHHHHHH---HH--------HHCCCEEEEC-CCHHHHHHHH-HHHHHHHHH
Q ss_conf 9999999---87--------6369889993-9789999999-999999985
Q gi|254781197|r 142 NLDPDLF---GK--------NHSYSFTIVN-NHLPTACRQV-GFIREFVKQ 179 (185)
Q Consensus 142 ~i~~rl~---~~--------~~~fD~~IvN-ddle~a~~~l-~~I~e~~~~ 179 (185)
.+++-.. .. .+.-|.+|-+ .+-+.|++-| ..|...++.
T Consensus 158 vi~q~~~~v~p~~~~yI~P~k~~ADlII~~~~~~~va~~~i~~~i~~~l~~ 208 (209)
T PRK05480 158 VINQYLSTVRPMHLQFIEPSKRYADIIIPEGGKNRVAIDILKAKIRQLLEK 208 (209)
T ss_pred HHHHHHHHHHHHHHHHCHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 999999976576997684527424089889996459999999999999842
No 16
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.75 E-value=7.6e-09 Score=72.26 Aligned_cols=153 Identities=16% Similarity=0.187 Sum_probs=84.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEEE
Q ss_conf 71899988999998999999985189817998611888999832355300012354211102763644555048605544
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYL 81 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt~ 81 (185)
.++||++|+||+||||+.+.|.+... ..| .||=||| +++.-++|.. |.=|.-..-- -|.-..
T Consensus 8 ~~iiVVMGVsGsGKSTig~~LA~~l~-~~f-------------iegDdfH--p~~Ni~KM~~-GiPLtD~DR~-pWL~~l 69 (177)
T PRK11545 8 HHIYVLMGVSGSGKSAVASAVAHQLH-AAF-------------LDGDFLH--PRCNIEKMAS-GEPLNDDDRK-PWLQAL 69 (177)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC-CCE-------------ECCCCCC--CHHHHHHHHC-CCCCCHHHHH-HHHHHH
T ss_conf 75999984798999999999999819-985-------------5365558--9999998628-9999868889-999999
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCHHHHHHCCC-------CCHHHHHHCCCCHHHHHHHHHHCCC-CCHHH-HHHHHHH---
Q ss_conf 3200233320123200243100013321055-------3101122213328999998863034-20789-9999998---
Q gi|254781197|r 82 KEDINNPMEHGYDILLILTHQGLAPLKKLYE-------DQVTSIFIAPPSEAELIQRRIKRRE-DTPFN-LDPDLFG--- 149 (185)
Q Consensus 82 ~~~i~~~~~~g~~~il~id~~G~~~lk~~~~-------~~~~~IfI~pps~~~L~~RL~~R~~-d~~~~-i~~rl~~--- 149 (185)
.+++......+..+++-+. + ||+.|. .++..||+.. +.+.+.+|+..|.. --+.. +..-+..
T Consensus 70 ~~~~~~~~~~~~~~VlaCS--A---LKr~YRd~Lr~~~~~~~fv~L~g-~~~~i~~Rl~~R~~HFmp~~LL~SQf~tLE~ 143 (177)
T PRK11545 70 NDAAFAMQRTNKVSLIVCS--A---LKKHYRDLLREGNPNLSFIYLKG-DFDVIESRLKARKGHFFKTQMLVTQFETLQE 143 (177)
T ss_pred HHHHHHHHCCCCCEEEEEC--C---CCHHHHHHHHHCCCCEEEEEECC-CHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
T ss_conf 9999999726996699870--1---11999999980699759999729-9999999997464689987899989998179
Q ss_pred -HHHCCCEEEECCC--HHHHHHHHHHHHHHHHHCC
Q ss_conf -7636988999397--8999999999999998523
Q gi|254781197|r 150 -KNHSYSFTIVNNH--LPTACRQVGFIREFVKQHR 181 (185)
Q Consensus 150 -~~~~fD~~IvNdd--le~a~~~l~~I~e~~~~~~ 181 (185)
...|-|.++++-+ +++.+ ..|++.+++-+
T Consensus 144 P~~~E~~~~~vdi~~~~e~iv---~~il~~l~~g~ 175 (177)
T PRK11545 144 PGADETDVLVVDIDQPLEGVV---ASTIEVIKKGK 175 (177)
T ss_pred CCCCCCCEEEEECCCCHHHHH---HHHHHHHHCCC
T ss_conf 998889869997899999999---99999997538
No 17
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.72 E-value=9.9e-09 Score=71.58 Aligned_cols=147 Identities=13% Similarity=0.207 Sum_probs=81.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEEE
Q ss_conf 71899988999998999999985189817998611888999832355300012354211102763644555048605544
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYL 81 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt~ 81 (185)
|+-||++|+|||||||+.+.|.+... +.| .||=||| +++.-++|.. |.=+.-..--+ |--+.
T Consensus 3 ~~a~VVmGVsGsGKSTvg~~LA~~L~-~~f-------------iegDd~H--p~~Ni~KM~~-GiPL~D~DR~p-WL~~l 64 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS-AKF-------------IDGDDLH--PAKNIDKMSQ-GIPLTDEDRLP-WLERL 64 (176)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHC-CCE-------------ECCCCCC--CHHHHHHHHC-CCCCCHHHHHH-HHHHH
T ss_conf 85799982898998999999999959-877-------------6234437--8989999868-99988667999-99999
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCHHHHHHCCC-------CCHHHHHHCCCCHHHHHHHHHHCCCC-CHHHH-HHHHH----
Q ss_conf 3200233320123200243100013321055-------31011222133289999988630342-07899-99999----
Q gi|254781197|r 82 KEDINNPMEHGYDILLILTHQGLAPLKKLYE-------DQVTSIFIAPPSEAELIQRRIKRRED-TPFNL-DPDLF---- 148 (185)
Q Consensus 82 ~~~i~~~~~~g~~~il~id~~G~~~lk~~~~-------~~~~~IfI~pps~~~L~~RL~~R~~d-~~~~i-~~rl~---- 148 (185)
.+.+......|..+++-+. + ||+.|. ..+..||+.. +.+.+.+|+..|... -+..+ ..-+.
T Consensus 65 ~~~~~~~~~~~~~~VvaCS---A--LK~~YRd~Lr~~~~~v~fv~L~g-~~~~i~~Rl~~R~gHFMp~~LL~SQf~tLE~ 138 (176)
T PRK09825 65 NDASYSLYKKNETGFIVCS---S--LKKQYRDILRKSSPNVHFLWLDG-DYETILARMQRRAGHFMPPDLLQSQFDALER 138 (176)
T ss_pred HHHHHHHHHCCCCEEEEEH---H--HHHHHHHHHHCCCCCEEEEEEEC-CHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
T ss_conf 9999999964998299718---8--67999999974799879999718-9999999997460379997999989998179
Q ss_pred HHHHCCCEEEEC--CCHHHHHHHHHH
Q ss_conf 876369889993--978999999999
Q gi|254781197|r 149 GKNHSYSFTIVN--NHLPTACRQVGF 172 (185)
Q Consensus 149 ~~~~~fD~~IvN--ddle~a~~~l~~ 172 (185)
-...|-|.+.++ ..+++.++++..
T Consensus 139 P~~dE~~v~~idi~~~~e~iv~~~~~ 164 (176)
T PRK09825 139 PCADEHDIARIDVNHDIENVTEQCRQ 164 (176)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHH
T ss_conf 99888986999789999999999999
No 18
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.70 E-value=1.4e-07 Score=64.95 Aligned_cols=158 Identities=18% Similarity=0.154 Sum_probs=73.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEE-EEE----ECCCCCCCCCCCCC-CCCCCC---HH---HHHHHCCCCEEEEEE
Q ss_conf 8999889999989999999851898179-986----11888999832355-300012---35---421110276364455
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLVM-PVG----VTTRRPRVDEKQYI-DYRFIS---QS---QFKGWKHTGLFIETT 71 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~~-~is----~TTR~~R~~E~~g~-dY~Fvs---~e---~F~~~i~~g~flE~~ 71 (185)
||-|+|+|||||||+++.|.+..+.... +++ |-.+.+.+.+..+. +|-+-. -+ +.-...++|+-+..-
T Consensus 1 iIgI~G~sgsGKTT~a~~L~~~l~~~~v~~i~~D~yy~~~~~~~~~~~~~~~fd~p~a~d~~~l~~~L~~L~~g~~i~~p 80 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 98988999885999999999980999858997888887986043878436787892264499999999998648976123
Q ss_pred EECCCEEEEECCCHHHHHHHCCCCCCCCCCCCHHH-----HHHCCCCCHHHHHHCCCCHHHHHHHHH----HCCCCCHHH
Q ss_conf 50486055443200233320123200243100013-----321055310112221332899999886----303420789
Q gi|254781197|r 72 KVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAP-----LKKLYEDQVTSIFIAPPSEAELIQRRI----KRREDTPFN 142 (185)
Q Consensus 72 ~~~g~~YGt~~~~i~~~~~~g~~~il~id~~G~~~-----lk~~~~~~~~~IfI~pps~~~L~~RL~----~R~~d~~~~ 142 (185)
.| .+.=+.....- ..+....++| + +|.-. +++.+. +.|||.+|....+.+|+. .||.+.++.
T Consensus 81 ~Y-d~~t~~r~~~~-~~i~~~~iiI--v--EGi~~l~~~~lr~~~D---~kIfid~~~d~rl~Rri~RD~~eRg~~~~~v 151 (198)
T cd02023 81 VY-DFKTHSRLKET-VTVYPADVII--L--EGILALYDKELRDLMD---LKIFVDTDADVRLIRRIERDIVERGRDLESV 151 (198)
T ss_pred CE-ECCCCCCCCCC-EEECCCCEEE--E--ECHHHCCCHHHHHHHH---CEEEEECCHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 10-03457546772-7965886599--8--2534306888886740---2378617899999999987698858999999
Q ss_pred HHHHHHH---H--------HHCCCEEEECC-CHHHHHHHH
Q ss_conf 9999998---7--------63698899939-789999999
Q gi|254781197|r 143 LDPDLFG---K--------NHSYSFTIVNN-HLPTACRQV 170 (185)
Q Consensus 143 i~~rl~~---~--------~~~fD~~IvNd-dle~a~~~l 170 (185)
+.+-... + ...-|.+|-|. |-+.|+..|
T Consensus 152 ~~~~~~~v~p~~~~~i~P~k~~ADlIi~~~~~~~~~~~~i 191 (198)
T cd02023 152 INQYLKFVKPMHEQFIEPTKRYADVIIPRGGDNHVAIDLI 191 (198)
T ss_pred HHHHHHHHHHHHHHHCCCCHHCCCEEECCCCCCCHHHHHH
T ss_conf 9999986078799865241514738978999862199999
No 19
>PTZ00301 uridine kinase; Provisional
Probab=98.69 E-value=1.3e-07 Score=64.99 Aligned_cols=167 Identities=14% Similarity=0.154 Sum_probs=75.9
Q ss_pred CCC-EEEEECCCCCCHHHHHHHHHHHC----CCEEEE-E---EEC-CCCCCCCCCCCCCCCCCCHHH-----HHH---HC
Q ss_conf 971-89998899999899999998518----981799-8---611-888999832355300012354-----211---10
Q gi|254781197|r 1 MAH-IFVLIGASGVGETTIAKQVVLNS----EYLVMP-V---GVT-TRRPRVDEKQYIDYRFISQSQ-----FKG---WK 62 (185)
Q Consensus 1 m~k-iivi~GpSGsGK~tl~~~L~~~~----~~~~~~-i---s~T-TR~~R~~E~~g~dY~Fvs~e~-----F~~---~i 62 (185)
|.- +|-|+|+|||||||+++.|.+.. +....+ + +|= .+...+-+..| .+.|=..+. |.+ ..
T Consensus 1 m~~~iIgIaGgSgSGKTT~a~~i~~~l~~~~~~~~v~ii~~D~Yy~d~~~~~~~~~~-~~NfDhP~a~D~dLl~~~L~~L 79 (210)
T PTZ00301 1 MPCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERA-YTNYDHPKSLEHDLLTTHLREL 79 (210)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHCC-CCCCCCCCCCCHHHHHHHHHHH
T ss_conf 998899996887678999999999998761499807998367667787658865627-8899982303699999999999
Q ss_pred CCCEEEEEEEECCCEEEEECCCHHHHHHHCCCCCCCCCCCCHH-----HHHHCCCCCHHHHHHCCCCHHHHHHHHH----
Q ss_conf 2763644555048605544320023332012320024310001-----3321055310112221332899999886----
Q gi|254781197|r 63 HTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLA-----PLKKLYEDQVTSIFIAPPSEAELIQRRI---- 133 (185)
Q Consensus 63 ~~g~flE~~~~~g~~YGt~~~~i~~~~~~g~~~il~id~~G~~-----~lk~~~~~~~~~IfI~pps~~~L~~RL~---- 133 (185)
++|+=++--.| ++.=++ +..-...+.-..++| ++|.. .+++.+. +.|||.+|....|.+|+.
T Consensus 80 k~Gk~I~~P~Y-df~~h~-R~~~~~~i~p~~vII----vEGi~~l~~~~lr~l~D---lkIFvd~~~dirl~RRi~RDv~ 150 (210)
T PTZ00301 80 KSGKTVQIPQY-DYVHHT-RSDTAVTMTPKSVLI----VEGILLFTNAELRNEMD---CLIFVDTPLDICLIRRAKRDMR 150 (210)
T ss_pred HCCCCEECCCC-CCCCCC-CCCCEEEECCCCEEE----EEEEHHCCCHHHHHHHC---EEEEECCCHHHHHHHHHHHHHH
T ss_conf 76996344665-556776-679708966885699----97104307898997742---4577348723788998887788
Q ss_pred HCCCCCHHHHHHHHHH---HH-------HCCCEEEECC--CHHHHHHHHH-HHHHHH
Q ss_conf 3034207899999998---76-------3698899939--7899999999-999999
Q gi|254781197|r 134 KRREDTPFNLDPDLFG---KN-------HSYSFTIVNN--HLPTACRQVG-FIREFV 177 (185)
Q Consensus 134 ~R~~d~~~~i~~rl~~---~~-------~~fD~~IvNd--dle~a~~~l~-~I~e~~ 177 (185)
+||.+.+..+++-... +. ..|.-+|++. +-+.|++-|. .|-..+
T Consensus 151 eRGr~~e~Vi~qy~~~V~P~~~~fI~P~k~~ADiIIp~~~~n~va~~~i~~~i~~~l 207 (210)
T PTZ00301 151 ERGRTFESVIEQYEATVRPMYYAYVEPSKVYADIIVPSWKDNSVAVGVLRAKLNHDL 207 (210)
T ss_pred HHCCCHHHHHHHHHHHHCCCHHHHCCHHHHCCCEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 758899999999996623058876805163361897899986319999999999998
No 20
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.66 E-value=1.5e-07 Score=64.74 Aligned_cols=162 Identities=14% Similarity=0.116 Sum_probs=81.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECC-----CCCCCCCCCCCCCCCCCHHHHHHHCC-CC-----EEEEE
Q ss_conf 718999889999989999999851898179986118-----88999832355300012354211102-76-----36445
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTT-----RRPRVDEKQYIDYRFISQSQFKGWKH-TG-----LFIET 70 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TT-----R~~R~~E~~g~dY~Fvs~e~F~~~i~-~g-----~flE~ 70 (185)
..+++|.|.||+||+||+-.|..+. ++..++|.-| |+--+.| -.-|.-|-+..+.+-. .+ .|..+
T Consensus 3 ~~iiligG~sGvGKStla~~lA~rl-gi~~visTD~IRevlR~~i~~e---P~L~~Ssy~A~~~~~~~~~~~ii~Gf~~q 78 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR-AIDIVLSGDYLREFLRPYVDDE---PVLAKSVYDAWEFYGSMTDENIVKGYLDQ 78 (197)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHC-CCCEEECCHHHHHHHHHHCCCC---CCHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 4799985799887899999999974-9975534347999999866887---40033046798870896527899999999
Q ss_pred EEECCCEEEEECCCHHHHHHHCCCCCCCCCCCCHHH----HHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHH-----
Q ss_conf 550486055443200233320123200243100013----32105531011222133289999988630342078-----
Q gi|254781197|r 71 TKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAP----LKKLYEDQVTSIFIAPPSEAELIQRRIKRREDTPF----- 141 (185)
Q Consensus 71 ~~~~g~~YGt~~~~i~~~~~~g~~~il~id~~G~~~----lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~d~~~----- 141 (185)
++. -.=|. ..-|+.++.+|.+++++ |+.- +......++..++|..++.+..++|+..|+.+...
T Consensus 79 ~~~--V~~gi-~avi~Ra~~eg~slIIE----GVHlvP~~i~~~~~~~~~~~~l~i~dee~H~~Rf~~R~~~~~~~~p~~ 151 (197)
T PRK12339 79 ARA--IMPGI-NRVIRRALLNGEDLVIE----SLYFHPPMIDENRTNNIRAFYLYIRDAELHRSRLADRINYTHKNSPGK 151 (197)
T ss_pred HHH--HHHHH-HHHHHHHHHCCCCEEEE----EEEECHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 999--99999-99999999739977998----521177887788765958999997888999999999854312677166
Q ss_pred ----------HHHHHHHHHHHCCCE-EEECCCHHHHHHHHHHHH
Q ss_conf ----------999999987636988-999397899999999999
Q gi|254781197|r 142 ----------NLDPDLFGKNHSYSF-TIVNNHLPTACRQVGFIR 174 (185)
Q Consensus 142 ----------~i~~rl~~~~~~fD~-~IvNddle~a~~~l~~I~ 174 (185)
.|+.-+.....+++- +|.|.|++.+++.+-.++
T Consensus 152 ry~~~f~~IR~Iq~ylv~~A~~~~ipvI~n~~~d~s~~~i~~~i 195 (197)
T PRK12339 152 RLAEHLPEYRTIMDYSIADARGYNIKVIDTDNYREARNPLLDPI 195 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHH
T ss_conf 99998999999999999988873998553772899999999984
No 21
>PRK06696 uridine kinase; Validated
Probab=98.63 E-value=1.3e-07 Score=65.02 Aligned_cols=156 Identities=15% Similarity=0.058 Sum_probs=68.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC--EEEEEEEC-----CCCCCC--CCCCCCCCCC-------CCHHHHHHHCCCCEE
Q ss_conf 8999889999989999999851898--17998611-----888999--8323553000-------123542111027636
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEY--LVMPVGVT-----TRRPRV--DEKQYIDYRF-------ISQSQFKGWKHTGLF 67 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~--~~~~is~T-----TR~~R~--~E~~g~dY~F-------vs~e~F~~~i~~g~f 67 (185)
+|-|.|||||||||++++|.+.... ....+-++ -+..|. |-.+...||. ..++-|..+...|.
T Consensus 28 ~VgIdG~~gSGKTTlA~~La~~L~~~G~~V~~v~~Ddf~~~~~~r~~~g~~~~~~~~~d~~D~~~l~~~ll~pL~~~~~- 106 (227)
T PRK06696 28 RVAIDGITASGKTTFANELAEEIKKRGRPVIRASIDDFHNPKVIRYRRGRESARGYYEDAYDYTAFRELLLKPLGPNGD- 106 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-
T ss_conf 9997789987879999999999974699489971544347377776516677443475410589999999866315898-
Q ss_pred EEEEE-ECCCEEEEECCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCC-CHHHHHHCCCCHHHHHHHHHHCCCCC---HHH
Q ss_conf 44555-04860554432002333201232002431000133210553-10112221332899999886303420---789
Q gi|254781197|r 68 IETTK-VRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYED-QVTSIFIAPPSEAELIQRRIKRREDT---PFN 142 (185)
Q Consensus 68 lE~~~-~~g~~YGt~~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~-~~~~IfI~pps~~~L~~RL~~R~~d~---~~~ 142 (185)
.+|.. .+++.-+.+...-......+. ++.+ +|.-.++..+.. --+.||+.++ .++..+|...|.... .++
T Consensus 107 ~~~~~~~~D~~td~~~~~~~~~~p~~~--VlIv--eG~~ll~~elr~~~D~~v~ld~~-~~~~~~R~~~Rd~~~~g~~~~ 181 (227)
T PRK06696 107 RQYRTASHDLKTDIPVHNEPLMAAPNA--VLIV--DGTFLLRKELRDLWDYKIFLDTD-FEESRRRGAKRDTEAFGSYEE 181 (227)
T ss_pred CEEEECCCCCCCCCCCCCCCEECCCCC--EEEE--ECHHHCCHHHHHCCCEEEEEECC-HHHHHHHHHHHHHHHHCCCHH
T ss_conf 058411246335754568716469980--8999--25564665577307489999799-999988766532544168378
Q ss_pred HH----HHHHHHHHC----------CCEEEECCCHHH
Q ss_conf 99----999987636----------988999397899
Q gi|254781197|r 143 LD----PDLFGKNHS----------YSFTIVNNHLPT 165 (185)
Q Consensus 143 i~----~rl~~~~~~----------fD~~IvNddle~ 165 (185)
.. .|...+... -|.+|.|||++.
T Consensus 182 ~~~~~~~ry~pa~~~Y~~~~~P~~~Advvv~n~d~~~ 218 (227)
T PRK06696 182 AEKMYLERYHPACKLYIDEHNPKECADVVFDNSDPAN 218 (227)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHCEEEEECCCCCC
T ss_conf 9999998763899998641683783859997999899
No 22
>PRK02496 adk adenylate kinase; Provisional
Probab=98.62 E-value=7.7e-08 Score=66.37 Aligned_cols=161 Identities=14% Similarity=0.182 Sum_probs=81.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEE
Q ss_conf 97189998899999899999998518981799861188899983235530001235421110276364455504860554
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGY 80 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt 80 (185)
|.||++ .||+||||+|.++.|.+.+.-.+++...-=|. |..... -.-.+.+..+++|.++.-.-+..-
T Consensus 1 m~riil-lG~PGSGKgTqa~~L~~~~~~~his~GdllR~----~~~~~s---~lg~~i~~~i~~G~lvpd~iv~~l---- 68 (185)
T PRK02496 1 MARLIF-LGPPGAGKGTQAVVLAEHLQIPHISTGDILRQ----AITEQT---PLGIKAQGYVDSGELVPDQLVLGL---- 68 (185)
T ss_pred CEEEEE-ECCCCCCHHHHHHHHHHHHCCEEECHHHHHHH----HHHCCC---HHHHHHHHHHHCCCCCCCHHHHHH----
T ss_conf 918999-79999998999999999969977888899999----987499---889999999987996772889999----
Q ss_pred ECCCHHHHHHHCCCCCCCCCCCCHHHH---HH---CCCCC-HHHHHHCCCCHHHHHHHHHHCC--CCCHHHHHHHHHHHH
Q ss_conf 432002333201232002431000133---21---05531-0112221332899999886303--420789999999876
Q gi|254781197|r 81 LKEDINNPMEHGYDILLILTHQGLAPL---KK---LYEDQ-VTSIFIAPPSEAELIQRRIKRR--EDTPFNLDPDLFGKN 151 (185)
Q Consensus 81 ~~~~i~~~~~~g~~~il~id~~G~~~l---k~---~~~~~-~~~IfI~pps~~~L~~RL~~R~--~d~~~~i~~rl~~~~ 151 (185)
-.+.+.+.-. ..-.++|==|.-..|. .. ..+.. ..+|++..| .+++.+|+..|+ .|+++.+.+|+..+.
T Consensus 69 i~~~l~~~~~-~~g~ilDGfPR~~~Qa~~l~~~l~~~~~~~~~vi~l~~~-~~~~~~Rl~~R~R~DD~~e~i~~Rl~~y~ 146 (185)
T PRK02496 69 VQERLQQPDA-ANGWILDGFPRNVTQAAFLDELLQEINQSGDRVVNLDVP-DDVIVERLLARGRKDDTEEVIRRRLEVYR 146 (185)
T ss_pred HHHHHHCCCC-CCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCC-HHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 9999848453-387788689885788999999999705673033330499-99999998746767898899999999999
Q ss_pred HC-------C----CEEEEC--CCHHHHHHHHHHHHH
Q ss_conf 36-------9----889993--978999999999999
Q gi|254781197|r 152 HS-------Y----SFTIVN--NHLPTACRQVGFIRE 175 (185)
Q Consensus 152 ~~-------f----D~~IvN--ddle~a~~~l~~I~e 175 (185)
.+ | -++.+| .+.++..++|..++.
T Consensus 147 ~~t~pvi~~y~~~~~~~~Idg~~~ieeV~~~I~~~l~ 183 (185)
T PRK02496 147 EQTAPLIDYYRDRQKLLTIDGNQSVEAVTTRLKAALA 183 (185)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHC
T ss_conf 9999999999846978999899998999999999863
No 23
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001 This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=98.57 E-value=3.9e-08 Score=68.09 Aligned_cols=142 Identities=17% Similarity=0.277 Sum_probs=80.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC----EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEE
Q ss_conf 999889999989999999851898----1799861188899983235530001235421110276364455504860554
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEY----LVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGY 80 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~----~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt 80 (185)
|||+|+|||||||++.+|+++..+ +.+ +||=|-| .++--++|- +|.=|-=.-=.+ |=..
T Consensus 1 ~VlmGvaG~GKs~~a~~l~~~lg~iyPd~~y-------------ieGDdLH--P~~Ni~KMs-~GiPL~DdDR~p-WL~~ 63 (175)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGDIYPDAKY-------------IEGDDLH--PAANIEKMS-RGIPLNDDDRWP-WLKN 63 (175)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHCCCCCC-------------CCCCCCC--CHHHHHHHC-CCCCCCCCCCHH-HHHH
T ss_conf 9676027862889999999985431578875-------------6886667--877798731-788887012043-7999
Q ss_pred ECCCHHHHHHHCCC--CCCCCCCCCHHHHHHCCCC-----------CHHHHHHCCCCHHHHHHHHHHCCC--------CC
Q ss_conf 43200233320123--2002431000133210553-----------101122213328999998863034--------20
Q gi|254781197|r 81 LKEDINNPMEHGYD--ILLILTHQGLAPLKKLYED-----------QVTSIFIAPPSEAELIQRRIKRRE--------DT 139 (185)
Q Consensus 81 ~~~~i~~~~~~g~~--~il~id~~G~~~lk~~~~~-----------~~~~IfI~pps~~~L~~RL~~R~~--------d~ 139 (185)
..++.....++++. .|+.|. | ||+.|.+ .+.+||+.+ +.+++.+|+..|.. +|
T Consensus 64 l~~~~~~~~~~~~~~~~~~~CS---A--LKr~YRD~LR~s~~~~~~~~~FiyL~~-~~~~~~~R~~~RkGHFMka~m~~S 137 (175)
T TIGR01313 64 LADALAQAAAKNKVHLVIITCS---A--LKRKYRDILRSSLEEAEPELHFIYLSG-SKEVILKRMKSRKGHFMKADMLES 137 (175)
T ss_pred HHHHHHHHHHCCCCCCEEEEEE---C--CHHHHHHHHHHHHCCCCCCEEEEEECC-CHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 9999999984577454478840---1--113555665422026898437886368-989999996107899862047899
Q ss_pred HHHHHHHHHHHHHCCCEEEE-CC-CHHHHHHHH
Q ss_conf 78999999987636988999-39-789999999
Q gi|254781197|r 140 PFNLDPDLFGKNHSYSFTIV-NN-HLPTACRQV 170 (185)
Q Consensus 140 ~~~i~~rl~~~~~~fD~~Iv-Nd-dle~a~~~l 170 (185)
++++-+..- ++.|-|.+.| ++ .++...++.
T Consensus 138 Qf~~LE~P~-~nDE~d~~~vd~~~~~e~~~~~~ 169 (175)
T TIGR01313 138 QFEALEEPT-ANDETDVVTVDIDQPLEAVEEDC 169 (175)
T ss_pred HHHHHCCCC-CCCCCCEEEECCCCCHHHHHHHH
T ss_conf 999727888-88885437860688657899999
No 24
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.55 E-value=4.3e-08 Score=67.85 Aligned_cols=114 Identities=14% Similarity=0.197 Sum_probs=58.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEEECC
Q ss_conf 89998899999899999998518981799861188899983235530001235421110276364455504860554432
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLKE 83 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt~~~ 83 (185)
|||++|+|||||||+++.|.++.. ..+. +|=++| +++.-.+| ..|.=+.-..-..+.......
T Consensus 1 liiv~GvsGsGKSTia~~La~~lg-~~~i-------------~~D~~h--~~~n~~km-~~G~pL~d~dr~~wl~~l~~~ 63 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLG-APFI-------------DGDDLH--PPANIAKM-AAGIPLNDEDRWPWLQALTDA 63 (150)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC-CCEE-------------CCCCCC--CHHHHHHH-HCCCCCCCCCHHHHHHHHHHH
T ss_conf 989991899999999999999719-9564-------------154335--47689998-679998852378999999999
Q ss_pred CHHHHHHHCCCCCCCCCCCCHH-HHHHCC-----CCCHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf 0023332012320024310001-332105-----53101122213328999998863034
Q gi|254781197|r 84 DINNPMEHGYDILLILTHQGLA-PLKKLY-----EDQVTSIFIAPPSEAELIQRRIKRRE 137 (185)
Q Consensus 84 ~i~~~~~~g~~~il~id~~G~~-~lk~~~-----~~~~~~IfI~pps~~~L~~RL~~R~~ 137 (185)
........|..+|+++. ..+ ..+..+ ...+..||+.+ +.+++.+|+.+|..
T Consensus 64 ~~~~~~~~g~~vVv~cS--aLk~~yR~~l~~~~~~~~v~fi~L~~-~~~~l~~Rl~~R~~ 120 (150)
T cd02021 64 LLAKLASAGEGVVVACS--ALKRIYRDILRGGAANPRVRFVHLDG-PREVLAERLAARKG 120 (150)
T ss_pred HHHHHHHCCCCEEEEEH--HHHHHHHHHHHHHCCCCCEEEEEEEC-CHHHHHHHHHHCCC
T ss_conf 99999844998799843--32399999999527689858999869-99999999984635
No 25
>pfam07931 CPT Chloramphenicol phosphotransferase-like protein. The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite.
Probab=98.53 E-value=4.5e-07 Score=61.90 Aligned_cols=154 Identities=17% Similarity=0.193 Sum_probs=86.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC--EEEEEE---ECCCCCCCCCCCCCCCCCCC-HHHHHHHCCCCEEEEEEEECC
Q ss_conf 718999889999989999999851898--179986---11888999832355300012-354211102763644555048
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEY--LVMPVG---VTTRRPRVDEKQYIDYRFIS-QSQFKGWKHTGLFIETTKVRD 75 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~--~~~~is---~TTR~~R~~E~~g~dY~Fvs-~e~F~~~i~~g~flE~~~~~g 75 (185)
|+||+|-|+|-||||||++.|....+. +.+++= .+++|.+...-+|.+ |.. ...+ +.+..
T Consensus 1 G~II~LNG~SSsGKSsiAraLQ~~l~~p~~h~~vD~f~~~~p~~~~~~~~gl~--~~~~~~~~------------g~~~~ 66 (174)
T pfam07931 1 GRIILLNGGSSSGKSSIARALQDILDGPWLHFGVDAFVEAMPPKRQDSGDGLE--WSTVGPVI------------GPEFP 66 (174)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHCCCCCCCCCCCCC--CCCCCCCH------------HHHHH
T ss_conf 91999748998887999999998474746764285888767711258877766--36666523------------56699
Q ss_pred CEEEEECCCHHHHHHHCCCCCCC-C--CCCCHHH-HHHCC-CCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHH---
Q ss_conf 60554432002333201232002-4--3100013-32105-531011222133289999988630342078999999---
Q gi|254781197|r 76 EYYGYLKEDINNPMEHGYDILLI-L--THQGLAP-LKKLY-EDQVTSIFIAPPSEAELIQRRIKRREDTPFNLDPDL--- 147 (185)
Q Consensus 76 ~~YGt~~~~i~~~~~~g~~~il~-i--d~~G~~~-lk~~~-~~~~~~IfI~pps~~~L~~RL~~R~~d~~~~i~~rl--- 147 (185)
-.+.--..+|....+.|..+|+| + +...... +++.+ +..+..|=+.+| .+++++|-..||.-..- .++.-
T Consensus 67 ~~~~~~~~~iaa~a~~G~nvIvD~v~~~~~~l~d~~~~~L~g~~v~~VGV~Cp-leil~~RE~~RgDR~~G-~A~~q~~~ 144 (174)
T pfam07931 67 LFEAAFYEAVAAMARAGNNVIVDDVILSGEWLQDCLQRLLSGLDVLFVGVRCP-LEVLERREIERGDRVPG-LAAWQAEA 144 (174)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECC-HHHHHHHHHHCCCCCCC-HHHHHHHH
T ss_conf 99999999999999779998996546693789999999858981799998789-99999998736999965-55789986
Q ss_pred HHHHHCCCEEEEC--CCHHHHHHHHH
Q ss_conf 9876369889993--97899999999
Q gi|254781197|r 148 FGKNHSYSFTIVN--NHLPTACRQVG 171 (185)
Q Consensus 148 ~~~~~~fD~~IvN--ddle~a~~~l~ 171 (185)
......||+.|.. ...++|-++|.
T Consensus 145 VH~~~~YDlevDTs~~s~~ecA~~I~ 170 (174)
T pfam07931 145 VHAGVEYDLEVDTSHQTPEECARRIR 170 (174)
T ss_pred HCCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf 02599986686799999999999999
No 26
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.48 E-value=1.8e-06 Score=58.42 Aligned_cols=165 Identities=18% Similarity=0.199 Sum_probs=85.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECC-----CCCCCCCCCCCCCCCCCHHHHHHHCCC--------CEEEEE
Q ss_conf 8999889999989999999851898179986118-----889998323553000123542111027--------636445
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTT-----RRPRVDEKQYIDYRFISQSQFKGWKHT--------GLFIET 70 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TT-----R~~R~~E~~g~dY~Fvs~e~F~~~i~~--------g~flE~ 70 (185)
+|.|.|+||+||+||+-.|.... ++..++|.-| |.....|.+-. -|+-|=+..+.+... -.|.++
T Consensus 94 iILigGtsGvGKSTlA~~LA~rL-gI~~visTD~IREVmR~~~~~el~P~-Lh~SSy~Awk~l~~~~~~~~~~I~Gf~~Q 171 (306)
T PRK04220 94 IILIGGASGVGTSTIAFELASRL-GIRSVIGTDSIREVMRKIISKELLPT-LHESSYTAWKSLRRPPWEEPDHILGFERH 171 (306)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-CCCEEECCHHHHHHHHHCCCCCCCCH-HHCCCHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 99985899887899999999970-98834222169999985248301751-32275131002367877865799999999
Q ss_pred EEECCCEEEEECCCHHHHHHHCCCCCCCCCCCCHH----HHHH---CCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHH-
Q ss_conf 55048605544320023332012320024310001----3321---055310112221332899999886303420789-
Q gi|254781197|r 71 TKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLA----PLKK---LYEDQVTSIFIAPPSEAELIQRRIKRREDTPFN- 142 (185)
Q Consensus 71 ~~~~g~~YGt~~~~i~~~~~~g~~~il~id~~G~~----~lk~---~~~~~~~~IfI~pps~~~L~~RL~~R~~d~~~~- 142 (185)
++. -.=|. ..-|+.++.+|.+++++ |+. -+++ .++ +++++.+..++.+..++|+..|+..+.-.
T Consensus 172 ~~~--V~~gI-~aiI~Ra~~eg~slIIE----GVHlvP~~i~~~~~~~~-~vi~fll~i~dEe~H~~RF~~Ra~~~~R~~ 243 (306)
T PRK04220 172 VEP--VLVGV-EAVIERALKEGISVIIE----GVHIVPGFIKEKYLNMP-NVFMFVLTLSDEETHKARFYARARVSKRPA 243 (306)
T ss_pred HHH--HHHHH-HHHHHHHHHCCCCEEEE----EECCCHHHHHHHHHCCC-CEEEEEEEECCHHHHHHHHHHHCCCCCCCH
T ss_conf 999--99999-99999999729968998----43037788777764388-389999997888999999998504478987
Q ss_pred ------------HHHHHHHHHHCCCE-EEECCCHHHHHHHH-HHHHHHHH
Q ss_conf ------------99999987636988-99939789999999-99999998
Q gi|254781197|r 143 ------------LDPDLFGKNHSYSF-TIVNNHLPTACRQV-GFIREFVK 178 (185)
Q Consensus 143 ------------i~~rl~~~~~~fD~-~IvNddle~a~~~l-~~I~e~~~ 178 (185)
|+.-+.....+++. +|.|.|++++++.+ ..|.+++.
T Consensus 244 ~rYl~~f~~IR~IQ~yLv~~A~~~~vPiI~N~~id~tv~~i~~~i~~r~~ 293 (306)
T PRK04220 244 ERYLKHFDEIREIQDYIVEKAKEHGVPVIENVSIEETVDKILEIITERLS 293 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 89999799999999999999888099810686689999999999999999
No 27
>PRK04182 cytidylate kinase; Provisional
Probab=98.45 E-value=8e-07 Score=60.45 Aligned_cols=153 Identities=13% Similarity=0.058 Sum_probs=76.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEE-EEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEEEC
Q ss_conf 89998899999899999998518981799-86118889998323553000123542111027636445550486055443
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLVMP-VGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLK 82 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~~~-is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt~~ 82 (185)
+|.|+||+||||+|+++.|.++.. +.+. ..-.-|.. .+..| ++.++|.+..+++.-+ . . ...
T Consensus 2 ~ItI~g~~GSGk~tIak~LA~~lg-~~~~d~g~i~r~~--a~~~g-----~~~~~~~~~~e~~~~i-----d-~---~~~ 64 (178)
T PRK04182 2 RITISGPPGSGKTTVARLLAEKLG-LKLVSAGDIFREL--ARERG-----MSLEEFNKYAEEDPEI-----D-K---EID 64 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-CEEECHHHHHHHH--HHHCC-----CCHHHHHHHHHCCHHH-----H-H---HHH
T ss_conf 899958998887999999999959-9387212999999--99859-----9999999998519268-----9-9---999
Q ss_pred CCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHH----HHHHHHH--------
Q ss_conf 2002333201232002431000133210553101122213328999998863034207899----9999987--------
Q gi|254781197|r 83 EDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDTPFNL----DPDLFGK-------- 150 (185)
Q Consensus 83 ~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~d~~~~i----~~rl~~~-------- 150 (185)
..+.+. .++..||++- . ++..+... ...+.|||.+| .+...+|+.+|..-+.++. ..|....
T Consensus 65 ~~~~~~-a~~~~~Vi~G-R-~~~~il~~--~~~l~ifl~A~-~e~R~~Ri~~r~~~~~~~a~~~i~~rd~~~~~r~~~~y 138 (178)
T PRK04182 65 RRQLEL-AKRGNVVLEG-R-LAGWIVKN--YADLKIYLKAP-LEVRAKRIAEREGISVEEALEETIEREESEAKRYLEYY 138 (178)
T ss_pred HHHHHH-HHCCCEEEEC-C-CCCEEECC--CCCEEEEEECC-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999-8539989983-8-88769727--98779999899-99999999973299999999999998999999999860
Q ss_pred ------HHCCCEEEECC--CHHHHHHHHHHHHHH-HHH
Q ss_conf ------63698899939--789999999999999-985
Q gi|254781197|r 151 ------NHSYSFTIVNN--HLPTACRQVGFIREF-VKQ 179 (185)
Q Consensus 151 ------~~~fD~~IvNd--dle~a~~~l~~I~e~-~~~ 179 (185)
...||.+|.+. +.+++++.|...++. +++
T Consensus 139 ~~~~~d~~~ydl~Idts~l~~d~vv~~I~~~i~k~l~~ 176 (178)
T PRK04182 139 GIDIDDLSIYDLVINTSKWSPEEVFEIILAAIDKLLLA 176 (178)
T ss_pred CCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 89977531074899899999999999999999999844
No 28
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.43 E-value=1.9e-07 Score=64.08 Aligned_cols=55 Identities=18% Similarity=0.345 Sum_probs=40.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEE---------EEECCCCCCCCCCCCCCCCCCCH
Q ss_conf 97189998899999899999998518981799---------86118889998323553000123
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSEYLVMP---------VGVTTRRPRVDEKQYIDYRFISQ 55 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~---------is~TTR~~R~~E~~g~dY~Fvs~ 55 (185)
+.++|+|+||+|||||.|+-+|.+..+.-..+ .+--|-+|.+.|..|+.||+++-
T Consensus 3 ~~~ii~i~GpTasGKs~la~~la~~~~~eIIsaDS~QvYk~l~IgTakps~~e~~~i~Hhli~~ 66 (304)
T PRK00091 3 KPKLIVLVGPTASGKTALAIELAKRLNGEIISVDSMQVYRGMDIGTAKPTAEELAGVPHHLIDI 66 (304)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECHHHHHCCCCEEECCCCHHHHCCCCCEEEEE
T ss_conf 9977999898865899999999998799899412688749998688999999981898124345
No 29
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.43 E-value=2.3e-07 Score=63.62 Aligned_cols=155 Identities=18% Similarity=0.184 Sum_probs=77.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEEECCC
Q ss_conf 99988999998999999985189817998611888999832355300012354211102763644555048605544320
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLKED 84 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt~~~~ 84 (185)
|+|.||+||||+|.++.|.+.+.-.++++..-=|. |+.-.. -.-.+..+.+++|.++--..+..- -.+.
T Consensus 3 iillG~PGsGKgTqa~~la~~~~~~~is~GdllR~----~i~~~s---~~g~~i~~~~~~G~lVpd~i~~~l----v~~~ 71 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRA----AIKAGT---ELGKEAKSYMDAGELVPDEIVIGL----VKER 71 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEECHHHHHHH----HHHCCC---HHHHHHHHHHHCCCCCCHHHHHHH----HHHH
T ss_conf 99989999987999999999869917868899999----987399---889999999977987788999999----9999
Q ss_pred HHHHHHHCCCCCCCCCCCCH-------HHHHH---CCCCC-HHHHHHCCCCHHHHHHHHHHC------------------
Q ss_conf 02333201232002431000-------13321---05531-011222133289999988630------------------
Q gi|254781197|r 85 INNPMEHGYDILLILTHQGL-------APLKK---LYEDQ-VTSIFIAPPSEAELIQRRIKR------------------ 135 (185)
Q Consensus 85 i~~~~~~g~~~il~id~~G~-------~~lk~---~~~~~-~~~IfI~pps~~~L~~RL~~R------------------ 135 (185)
+.+.- ..+-.|+| |. ..+.+ ..+.. ..+|++.. +.+++.+|+..|
T Consensus 72 l~~~~-~~~G~IlD----GfPRt~~Qa~~l~~~l~~~~~~i~~Vi~l~v-~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~ 145 (215)
T PRK00279 72 LAQPD-CANGFLLD----GFPRTIPQAEALDEMLKEAGIKLDAVIEIDV-PDEELVERLSGRRICPACGRTYHVKFNPPK 145 (215)
T ss_pred HHCCC-CCCEEEEE----CCCCCHHHHHHHHHHHHHCCCCCCEEEEEEC-CHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 83656-55707986----8999879999999999864998688999968-899999998611567556764554578988
Q ss_pred ---------------CCCCHHHHHHHHHHHHHC-------C----CEEEEC--CCHHHHHHHHHHHHHH
Q ss_conf ---------------342078999999987636-------9----889993--9789999999999999
Q gi|254781197|r 136 ---------------REDTPFNLDPDLFGKNHS-------Y----SFTIVN--NHLPTACRQVGFIREF 176 (185)
Q Consensus 136 ---------------~~d~~~~i~~rl~~~~~~-------f----D~~IvN--ddle~a~~~l~~I~e~ 176 (185)
..|+++.+.+|+..+..+ | -++.+| .+.++.+++|..+++.
T Consensus 146 ~~~~~~~~~~~l~~R~DD~~e~i~~Rl~~y~~~t~pvi~~y~~~~~l~~Idg~~~~~eV~~~I~~~l~~ 214 (215)
T PRK00279 146 VEGKCDVTGEELIQRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK 214 (215)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 666455433202579998699999999999998889999998179789998989989999999999844
No 30
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=98.41 E-value=3.3e-07 Score=62.70 Aligned_cols=166 Identities=17% Similarity=0.167 Sum_probs=79.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCH--HHHHHHCCCCEEEEEEEECCCEE
Q ss_conf 9718999889999989999999851898179986118889998323553000123--54211102763644555048605
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQ--SQFKGWKHTGLFIETTKVRDEYY 78 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~--e~F~~~i~~g~flE~~~~~g~~Y 78 (185)
||++|+|=|+-||||||.++.|.+....-... .++||.|..+...-.=...+.. +.+......=-| .-..+
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~-v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLf------aadR~ 74 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIK-VVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLF------AADRA 74 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCE-EEEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHH------HHHHH
T ss_conf 96299997888898899999999999982980-799868999869999999973886678889999999------99999
Q ss_pred EEECCCHHHHHHHCCCCCCC---------------CCCCCHHHHHHCCCC--C-HHHHHHCCCCHHHHHHHHHHCCCC-C
Q ss_conf 54432002333201232002---------------431000133210553--1-011222133289999988630342-0
Q gi|254781197|r 79 GYLKEDINNPMEHGYDILLI---------------LTHQGLAPLKKLYED--Q-VTSIFIAPPSEAELIQRRIKRRED-T 139 (185)
Q Consensus 79 Gt~~~~i~~~~~~g~~~il~---------------id~~G~~~lk~~~~~--~-~~~IfI~pps~~~L~~RL~~R~~d-~ 139 (185)
......|...+..|++||+| +++.-..++.+..+. . -..+|+..| .++-.+|..+|+.. +
T Consensus 75 ~h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~-~e~al~R~~~r~~~~~ 153 (208)
T COG0125 75 QHLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVP-PEVALERIRKRGELRD 153 (208)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEECC-HHHHHHHHHHCCCCCC
T ss_conf 999999788762899999878313788853530599989999999765478999889999488-8999999983277655
Q ss_pred HHHH-----HHHH----HHHHHCCC--EEEEC--CCHHHHHHHHHHHH
Q ss_conf 7899-----9999----98763698--89993--97899999999999
Q gi|254781197|r 140 PFNL-----DPDL----FGKNHSYS--FTIVN--NHLPTACRQVGFIR 174 (185)
Q Consensus 140 ~~~i-----~~rl----~~~~~~fD--~~IvN--ddle~a~~~l~~I~ 174 (185)
..+. .++. ......+- ++++| .++++..+++..++
T Consensus 154 r~E~~~~~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l 201 (208)
T COG0125 154 RFEKEDDEFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKIL 201 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHH
T ss_conf 156677899999999999998618771899989999799999999999
No 31
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family; InterPro: IPR006266 This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=98.41 E-value=5.4e-07 Score=61.42 Aligned_cols=151 Identities=18% Similarity=0.289 Sum_probs=95.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCC--CCCCCCCCCCCCCCCHHHHHHHCCCCEEEE-EEEECCCEEEE
Q ss_conf 899988999998999999985189817998611888--999832355300012354211102763644-55504860554
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRR--PRVDEKQYIDYRFISQSQFKGWKHTGLFIE-TTKVRDEYYGY 80 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~--~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE-~~~~~g~~YGt 80 (185)
++.+.||+||||-|.+.++.+.++..+++--=-=|. .|.|-.+|. --+.+|++|+-+= ..++
T Consensus 1 V~FvLGGPGSGKGTQCa~Iv~~f~~~HLSAGDLLR~E~~R~GSe~g~--------lI~~~IkeG~IVPs~VTv------- 65 (189)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGYVHLSAGDLLRAEIKREGSENGE--------LIESYIKEGKIVPSEVTV------- 65 (189)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEECHHHHHHHHHHHCCCCCCC--------HHHHHHHCCCEEHHEEEH-------
T ss_conf 97763698987567899999853946880747889986104788850--------377441158311122324-------
Q ss_pred ECCCHHHHHHHCC--CCCCCCCCCCH-----------HHH-HHCCCCC-HHHHHHCCCCHHHHHHHHHHCC------CCC
Q ss_conf 4320023332012--32002431000-----------133-2105531-0112221332899999886303------420
Q gi|254781197|r 81 LKEDINNPMEHGY--DILLILTHQGL-----------APL-KKLYEDQ-VTSIFIAPPSEAELIQRRIKRR------EDT 139 (185)
Q Consensus 81 ~~~~i~~~~~~g~--~~il~id~~G~-----------~~l-k~~~~~~-~~~IfI~pps~~~L~~RL~~R~------~d~ 139 (185)
.=+.+++++.. .-.+-|| |. +.+ ...-..+ +.++|+.+| .+++.+|+++|+ .|+
T Consensus 66 --~LL~kai~~~~W~~~~FLID--GFPRN~eN~~~W~~~~P~~kv~~~~alVlF~dC~-e~~m~~R~l~Rg~~SGR~DDN 140 (189)
T TIGR01359 66 --ELLKKAIKEDGWSSKKFLID--GFPRNEENLEAWEKLMPDNKVNVKFALVLFFDCP-EEVMIKRLLKRGQTSGRVDDN 140 (189)
T ss_pred --HHHHHHHHHCCCCCCCEEEC--CCCCCHHHHHHHHHHCCCCCCCEEEEEEEEEECC-CCEEEEEECCCCCCCCCCCCC
T ss_conf --58887776315678823662--5788887888898617877612026789998679-714764431478947861071
Q ss_pred HHHHHHHHHHHHHC-------C---C-EEEEC--CCHHHHHHHHHHHH
Q ss_conf 78999999987636-------9---8-89993--97899999999999
Q gi|254781197|r 140 PFNLDPDLFGKNHS-------Y---S-FTIVN--NHLPTACRQVGFIR 174 (185)
Q Consensus 140 ~~~i~~rl~~~~~~-------f---D-~~IvN--ddle~a~~~l~~I~ 174 (185)
.+.|.+|+.-+..+ | + ..-|| .+.|..+++|+.|.
T Consensus 141 ~esl~KR~~~y~~~t~piIe~f~~~~kv~~i~a~~~ve~Vf~~v~~~f 188 (189)
T TIGR01359 141 IESLKKRFRTYNEETLPIIEYFENKGKVKEINAEGSVEEVFEDVEKIF 188 (189)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf 778888866540168302100002795798279999889999999970
No 32
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=98.41 E-value=6.5e-06 Score=55.14 Aligned_cols=140 Identities=14% Similarity=0.155 Sum_probs=73.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEEEC
Q ss_conf 18999889999989999999851898179986118889998323553000123542111027636445550486055443
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLK 82 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt~~ 82 (185)
.+|+|+|+.|+||||+++.|. ... +.. ++ --+|-. ++|.+.++.+-. ..|=.-.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg-~~~-i~--------------------l~el~~--e~~~~~~~de~r-~s~~vD~ 54 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELG-YKV-IE--------------------LNELAK--ENGLYTEYDELR-KSVIVDV 54 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHH-HHC-CCE-EE--------------------HHHHHH--HCCCEECCCCCC-CEEEEEH
T ss_conf 937993799986687999999-829-846-61--------------------999998--669711437766-1588667
Q ss_pred CCHHHHHH---HCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHH---------HHH
Q ss_conf 20023332---012320024310001332105531011222133289999988630342078999999---------987
Q gi|254781197|r 83 EDINNPME---HGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDTPFNLDPDL---------FGK 150 (185)
Q Consensus 83 ~~i~~~~~---~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~d~~~~i~~rl---------~~~ 150 (185)
+.+.+.+. ....+|++-.+.+ ..++ +-.|++.....+.|.+||.+|| -+++.|..-+ ..+
T Consensus 55 d~~~~~le~~~~~~~~Ivd~H~~h------l~~~-~dlVvVLR~~p~~L~~RLk~RG-y~~eKI~ENveAEi~~vi~~EA 126 (180)
T COG1936 55 DKLRKRLEELLREGSGIVDSHLSH------LLPD-CDLVVVLRADPEVLYERLKGRG-YSEEKILENVEAEILDVILIEA 126 (180)
T ss_pred HHHHHHHHHHHCCCCEEEECHHHH------CCCC-CCEEEEECCCHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999988888750588476126662------1787-8889997189899999998769-9878988779999999999999
Q ss_pred HHCCCEEEE----CCCHHHHHHHHHHHHHH
Q ss_conf 636988999----39789999999999999
Q gi|254781197|r 151 NHSYSFTIV----NNHLPTACRQVGFIREF 176 (185)
Q Consensus 151 ~~~fD~~Iv----Nddle~a~~~l~~I~e~ 176 (185)
...|+-++. |.+.+.+.+++.+|+..
T Consensus 127 ~E~~~~v~evdtt~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 127 VERFEAVIEVDTTNRSPEEVAEEIIDIIGG 156 (180)
T ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 973476499978999999999999999703
No 33
>PRK03839 putative kinase; Provisional
Probab=98.38 E-value=4.6e-06 Score=56.02 Aligned_cols=135 Identities=16% Similarity=0.153 Sum_probs=65.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEE-EEEEECCCEEEEEC
Q ss_conf 89998899999899999998518981799861188899983235530001235421110276364-45550486055443
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFI-ETTKVRDEYYGYLK 82 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~fl-E~~~~~g~~YGt~~ 82 (185)
+|+|+|.+|+||||+++.|.++.. +.. ++-. ++ ++...+. +|. .-+-+..
T Consensus 2 ~I~ITGTPGtGKTTva~~La~~lg-~~~-i~v~--------------------~l---a~~~~~~~~~d----~~~~iD~ 52 (180)
T PRK03839 2 IIAITGTPGVGKTTISKLLAEKLG-YEY-VNLR--------------------DF---ALEKGIGEEKD----DELEIDV 52 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-CEE-EEHH--------------------HH---HHHCCCCCCCC----CCCCCCH
T ss_conf 899978999998999999999769-879-8799--------------------99---99839986767----7504659
Q ss_pred CCHHHHHH---HCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHH----HHHH-----HH
Q ss_conf 20023332---012320024310001332105531011222133289999988630342078999----9999-----87
Q gi|254781197|r 83 EDINNPME---HGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDTPFNLD----PDLF-----GK 150 (185)
Q Consensus 83 ~~i~~~~~---~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~d~~~~i~----~rl~-----~~ 150 (185)
+.+.+.+. .++.++++-+ . -..+|... +|-+. -+..+|.+||.+||- ++..|. ..++ .+
T Consensus 53 d~l~~~~~~~~~~~~~ivd~H--~----~h~~p~D~-VIVLR-~~P~iL~~RL~~RgY-s~~KI~ENveaEil~vil~Ea 123 (180)
T PRK03839 53 DELAYFVEEEFKGKNVVLDGH--L----SHLMPADL-VIVLR-AHPKLIAERLKERGY-SKKKIGENVEAELVDVILIEA 123 (180)
T ss_pred HHHHHHHHHHHCCCCEEEEEE--C----CCCCCCCE-EEEEE-CCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999998734898899864--3----14636877-99997-886999999997699-989999999999999999999
Q ss_pred HHCCCEE--EE--CCCHHHHHHHHHHHHHH
Q ss_conf 6369889--99--39789999999999999
Q gi|254781197|r 151 NHSYSFT--IV--NNHLPTACRQVGFIREF 176 (185)
Q Consensus 151 ~~~fD~~--Iv--Nddle~a~~~l~~I~e~ 176 (185)
...|+-+ |. |...++.+++|.++++.
T Consensus 124 ~e~~~~~~eidtt~~~pe~v~~~I~~~i~~ 153 (180)
T PRK03839 124 LEEHENVIEVDTTNKTPEEVVEEILNLIKS 153 (180)
T ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 984398899989999999999999999957
No 34
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=98.38 E-value=5.2e-07 Score=61.53 Aligned_cols=124 Identities=21% Similarity=0.275 Sum_probs=62.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEE-CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEE-EEEECCCEEEEE
Q ss_conf 89998899999899999998518981799861-1888999832355300012354211102763644-555048605544
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLVMPVGV-TTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIE-TTKVRDEYYGYL 81 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~~~is~-TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE-~~~~~g~~YGt~ 81 (185)
+|+|+||+||||||+++.|.++.. +.+ ||- -=|.. -+.-|-| +.+ - +..| .-+..-. +-
T Consensus 2 ~I~ISGpPGSGktTvA~~lA~~Ls-l~~-iSaG~iRel--A~~~Gld---l~E--~-------~~aee~~eIDk~---iD 62 (173)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS-LKL-ISAGDIREL--AEKMGLD---LAE--S-------KYAEENPEIDKK---ID 62 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC-CCE-ECCCHHHHH--HHHCCCC---HHH--H-------HHHCCCCCCCHH---HH
T ss_conf 788735896864789999998639-831-202007889--8642988---777--3-------443058631167---53
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCHHHHH-HCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCH----HHHHHHHHHH
Q ss_conf 320023332012320024310001332-10553101122213328999998863034207----8999999987
Q gi|254781197|r 82 KEDINNPMEHGYDILLILTHQGLAPLK-KLYEDQVTSIFIAPPSEAELIQRRIKRREDTP----FNLDPDLFGK 150 (185)
Q Consensus 82 ~~~i~~~~~~g~~~il~id~~G~~~lk-~~~~~~~~~IfI~pps~~~L~~RL~~R~~d~~----~~i~~rl~~~ 150 (185)
+ .+.+...+-+++|++-...|=...+ -.|.+ +.|||.+| +++-.+|..+|..-+. .++..|....
T Consensus 63 ~-~~~E~A~~~~nvvlEsrlagW~~~~nG~yaD--~~iyL~A~-levRA~RIA~Re~k~~~~A~~~~~~REe~e 132 (173)
T TIGR02173 63 R-RIREIAEKEKNVVLESRLAGWILKKNGEYAD--VKIYLKAP-LEVRARRIAKRENKDLTVALKEIIEREESE 132 (173)
T ss_pred H-HHHHHHCCCCCEEEEEHHHHHHCCCCCCCCC--EEEEECCC-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 7-8855430489668852054331157889675--67886088-333243321136889899999999988762
No 35
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.38 E-value=1.1e-06 Score=59.71 Aligned_cols=132 Identities=15% Similarity=0.107 Sum_probs=60.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC--CEEE-EEEEC--CCCCCCCCCCCCCCCCCCH-----HHHHHH---CCCCEEEEE
Q ss_conf 899988999998999999985189--8179-98611--8889998323553000123-----542111---027636445
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSE--YLVM-PVGVT--TRRPRVDEKQYIDYRFISQ-----SQFKGW---KHTGLFIET 70 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~--~~~~-~is~T--TR~~R~~E~~g~dY~Fvs~-----e~F~~~---i~~g~flE~ 70 (185)
+|-|+|||||||||++++|.+..+ +... ++|.= =++ +..+ ...++.|-.+ +.|.+. .++|+=++.
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~~~~~~~vis~D~yy~~-~~~~-~~~~~n~D~p~a~d~~ll~~~L~~L~~g~~v~~ 78 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVP-RKTP-RDEDGNYDFESILDLDLLNKNLHDLLNGKEVEL 78 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC-CCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 98998989778999999999998464885399954666457-6520-001468898135349999999999977995575
Q ss_pred EEECCCEEEEECCCHHHHHHHCCCCCCCCCCCCHHH----HHHCCCCCHHHHHHCCCCHH-HHHHHHH----HCCCCCHH
Q ss_conf 550486055443200233320123200243100013----32105531011222133289-9999886----30342078
Q gi|254781197|r 71 TKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAP----LKKLYEDQVTSIFIAPPSEA-ELIQRRI----KRREDTPF 141 (185)
Q Consensus 71 ~~~~g~~YGt~~~~i~~~~~~g~~~il~id~~G~~~----lk~~~~~~~~~IfI~pps~~-~L~~RL~----~R~~d~~~ 141 (185)
-. +++.-|+....-.-......++| ++|... |++.+ -+.||+.+|+.. +|.+|+. +||...+.
T Consensus 79 P~-YDf~t~~r~~~~~~~~~p~~vII----vEGi~~l~~~lr~~~---D~kIfvd~~~~~~Rl~RRi~RD~~eRg~~~~~ 150 (179)
T cd02028 79 PI-YDFRTGKRRGYRKLKLPPSGVVI----LEGIYALNERLRSLL---DIRVAVSGGVHLNRLLRRVVRDIQFRGYSAEL 150 (179)
T ss_pred EE-EECCCCCCCCCCEEEECCCCEEE----EECHHHCCHHHHHHC---CEEEEEECCCHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 42-00437860698059608997899----924343899899766---86999978836888899999779773999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254781197|r 142 NLDP 145 (185)
Q Consensus 142 ~i~~ 145 (185)
.+.+
T Consensus 151 v~~q 154 (179)
T cd02028 151 TILM 154 (179)
T ss_pred HHHH
T ss_conf 9998
No 36
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.35 E-value=6.1e-07 Score=61.12 Aligned_cols=151 Identities=13% Similarity=0.183 Sum_probs=73.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCC-EEEEEEEE-CCCEEE
Q ss_conf 7189998899999899999998518981799861188899983235530001235421110276-36445550-486055
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTG-LFIETTKV-RDEYYG 79 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g-~flE~~~~-~g~~YG 79 (185)
|.+|.|+|.||||||||++.|........ ..-.+++-+.|......+ .|-..... +-..+
T Consensus 24 g~viWlTGLSGSGKTTlA~~L~~~L~~~~-----------------~~~~~LDGD~lR~~l~~dlgfs~~dR~~n~~r~- 85 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEALHELG-----------------VHTYLLDGDNVRHGLCSDLGFSDADRKENIRRV- 85 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCC-----------------CCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHH-
T ss_conf 86999879999988999999999999759-----------------975997779998743667898999999999999-
Q ss_pred EECCCHHH-HHHHCCCCCCC-CCCCC-H-HHHHHCCCC-CHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHH-HHH----
Q ss_conf 44320023-33201232002-43100-0-133210553-101122213328999998863034207899999-998----
Q gi|254781197|r 80 YLKEDINN-PMEHGYDILLI-LTHQG-L-APLKKLYED-QVTSIFIAPPSEAELIQRRIKRREDTPFNLDPD-LFG---- 149 (185)
Q Consensus 80 t~~~~i~~-~~~~g~~~il~-id~~G-~-~~lk~~~~~-~~~~IfI~pps~~~L~~RL~~R~~d~~~~i~~r-l~~---- 149 (185)
..+-+ ..++|.+||+. +.|-- . ...++.++. +.+-|||.+| .+++++|= ... +-++ ...
T Consensus 86 ---~~lak~l~~~G~iVIvs~Isp~~~~R~~~R~~~~~~~f~EIyl~~~-le~c~~RD------~Kg-LY~ka~~gei~n 154 (198)
T PRK03846 86 ---GEVAKLMVDAGLVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTP-LAICEARD------PKG-LYKKARAGEIKN 154 (198)
T ss_pred ---HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCC-HHHHHHCC------CHH-HHHHHHCCCCCC
T ss_conf ---9999999858983664147887999999998678775799994388-99998738------165-788986588888
Q ss_pred ---------HHHCCCEEEECC--CHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf ---------763698899939--78999999999999998523648
Q gi|254781197|r 150 ---------KNHSYSFTIVNN--HLPTACRQVGFIREFVKQHRIIK 184 (185)
Q Consensus 150 ---------~~~~fD~~IvNd--dle~a~~~l~~I~e~~~~~~~~~ 184 (185)
....-|.+|.++ ++++++ ..|+++++++-+++
T Consensus 155 ~~Gvd~pyE~P~~pdl~Idt~~~si~~~~---~~I~~~l~~~~~i~ 197 (198)
T PRK03846 155 FTGIDSPYEAPESPEIHLDTGEQLVTNLV---EQLLDYLRQRDIIR 197 (198)
T ss_pred CEECCCCCCCCCCCCEEEECCCCCHHHHH---HHHHHHHHHCCCCC
T ss_conf 40078899999998069869999999999---99999999867857
No 37
>PRK07667 uridine kinase; Provisional
Probab=98.33 E-value=3.5e-06 Score=56.74 Aligned_cols=135 Identities=13% Similarity=0.218 Sum_probs=63.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC--CEEEEEE-----ECCCCCCCC--CCCCCCCCCCC-------HHHHHHHCCCCEE
Q ss_conf 899988999998999999985189--8179986-----118889998--32355300012-------3542111027636
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSE--YLVMPVG-----VTTRRPRVD--EKQYIDYRFIS-------QSQFKGWKHTGLF 67 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~--~~~~~is-----~TTR~~R~~--E~~g~dY~Fvs-------~e~F~~~i~~g~f 67 (185)
||-|.|+|||||||++++|.+..+ +....+- |..+..|.+ -.+...|++.+ ++-|+.+ +.|.=
T Consensus 16 iIgIaG~sgSGKTTla~~L~~~l~~~~~~v~v~~~Dd~~~~~~~r~~~~~~~~~~~~~~~~D~~~L~~~ll~~L-k~g~~ 94 (190)
T PRK07667 16 ILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDHIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKL-QNETK 94 (190)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHH-CCCCC
T ss_conf 99977989788999999999998665983799966624265888730598540012543125999999999984-38997
Q ss_pred EEEEEECCCEEEEE-CCCHHHHHHHCCCCCCCCCCCCHHH----HHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHH
Q ss_conf 44555048605544-3200233320123200243100013----321055310112221332899999886303420789
Q gi|254781197|r 68 IETTKVRDEYYGYL-KEDINNPMEHGYDILLILTHQGLAP----LKKLYEDQVTSIFIAPPSEAELIQRRIKRREDTPFN 142 (185)
Q Consensus 68 lE~~~~~g~~YGt~-~~~i~~~~~~g~~~il~id~~G~~~----lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~d~~~~ 142 (185)
+++..|. +.-.+. ..++ .+....++|+ +|... ++..+. +.||+.+|....+ .|...|...+...
T Consensus 95 i~~p~Yd-~~t~~~~~~~~--~v~p~~VIIv----EGI~l~~~elrd~~D---~kIfVD~~~d~r~-~R~~~~~~~~l~~ 163 (190)
T PRK07667 95 LTLPFYH-DETDTCEMKKV--QIPIVGVIVI----EGVFLQRKEWRDFFH---YMVYLDCPRETRF-LRESEETQKNLSK 163 (190)
T ss_pred EEEEEEC-CCCCCCCCCEE--ECCCCCEEEE----ECHHHCCHHHHHHCC---EEEEEECCHHHHH-HHHHHHHHHHHHH
T ss_conf 6752460-23366776427--6699988999----504438887897568---7999978999998-8730202346899
Q ss_pred HHHHHHHH
Q ss_conf 99999987
Q gi|254781197|r 143 LDPDLFGK 150 (185)
Q Consensus 143 i~~rl~~~ 150 (185)
...|...+
T Consensus 164 ~~~ry~~a 171 (190)
T PRK07667 164 FENRYWKA 171 (190)
T ss_pred HHHHHHHH
T ss_conf 99999999
No 38
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=98.33 E-value=1.1e-06 Score=59.61 Aligned_cols=132 Identities=20% Similarity=0.178 Sum_probs=63.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC--EEE-EE----EECC-C---C--CCCCC-CCCCCCCCCCHHHHH--------HH
Q ss_conf 8999889999989999999851898--179-98----6118-8---8--99983-235530001235421--------11
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEY--LVM-PV----GVTT-R---R--PRVDE-KQYIDYRFISQSQFK--------GW 61 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~--~~~-~i----s~TT-R---~--~R~~E-~~g~dY~Fvs~e~F~--------~~ 61 (185)
||-|+|||||||||++++|.+..+. ... .+ -+.+ + + +-..+ ....+|-|-+.+.|+ ..
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~~~~~~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~d~P~a~d~~ll~~~l~~ 80 (196)
T pfam00485 1 IIGVAGSSGAGKTTVARTFVSIFGREGVPAAGIEGDSFHRYDRFYMDLHMEDRKRAGNNHYSFFSPEANDFDLLYEQFKE 80 (196)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECHHCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 98998998571999999999996605877641243179860410244375767651457889789662359999999999
Q ss_pred CCCCEEEEEEEECCCEEEEECCCHHHHHHHCCCCCCCCCCCCHHH-----HHHCCCCCHHHHHHCCCCHHHHHHHHHH--
Q ss_conf 027636445550486055443200233320123200243100013-----3210553101122213328999998863--
Q gi|254781197|r 62 KHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAP-----LKKLYEDQVTSIFIAPPSEAELIQRRIK-- 134 (185)
Q Consensus 62 i~~g~flE~~~~~g~~YGt~~~~i~~~~~~g~~~il~id~~G~~~-----lk~~~~~~~~~IfI~pps~~~L~~RL~~-- 134 (185)
.++|+=++.-.| .+.=|+.... ...+....++| ++|... +++.+. +.|||.++...+|.+|+.+
T Consensus 81 Lk~g~~i~~P~Y-df~~~~r~~~-~~~i~p~~viI----vEGi~~l~~~~ir~l~D---~kIfid~~~d~rl~RRi~RD~ 151 (196)
T pfam00485 81 LKEGGSGDKPIY-NHVTGEADPW-PELIEGADILF----IEGLHGLYDERVAQLLD---LKIYVDPDIDLELIQKIQRDM 151 (196)
T ss_pred HHCCCCEEEEEE-ECCCCCCCCC-CEECCCCCEEE----EECHHHCCCHHHHHHHC---EEEEEECCCCHHHHHHHHHCH
T ss_conf 708994576567-5134533677-36617885699----94333303277887638---479972680199999987345
Q ss_pred --CCCCCHHHHH
Q ss_conf --0342078999
Q gi|254781197|r 135 --RREDTPFNLD 144 (185)
Q Consensus 135 --R~~d~~~~i~ 144 (185)
||...+..++
T Consensus 152 ~eRgrs~~~v~~ 163 (196)
T pfam00485 152 AERGHSLEGVTD 163 (196)
T ss_pred HHHCCCHHHHHH
T ss_conf 751999999999
No 39
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.32 E-value=5.3e-06 Score=55.64 Aligned_cols=156 Identities=16% Similarity=0.213 Sum_probs=79.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEEECC
Q ss_conf 89998899999899999998518981799861188899983235530001235421110276364455504860554432
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLKE 83 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt~~~ 83 (185)
-|+|+|||||||+|++++|.+..+-.+.+. ----|++-..+.. --.+-+..+++|+++.-+-+ .|+-..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlst---gd~~r~~~~~~t~----lg~~~k~~i~~g~lv~d~i~----~~~v~~ 70 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDT---GDILRAAIAERTE----LGEEIKKYIDKGELVPDEIV----NGLVKE 70 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEECC---CCCCCHHHCCCCH----HHHHHHHHHHCCCCCCHHHH----HHHHHH
T ss_conf 799989999988999999999769978552---2011110032368----99999999875895041769----979999
Q ss_pred CHHHHHHHCCCCCCCCCCCC---HHHHHHC---CC-CCHHHHHHCCCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHHC
Q ss_conf 00233320123200243100---0133210---55-310112221332899999886303---42078999999987636
Q gi|254781197|r 84 DINNPMEHGYDILLILTHQG---LAPLKKL---YE-DQVTSIFIAPPSEAELIQRRIKRR---EDTPFNLDPDLFGKNHS 153 (185)
Q Consensus 84 ~i~~~~~~g~~~il~id~~G---~~~lk~~---~~-~~~~~IfI~pps~~~L~~RL~~R~---~d~~~~i~~rl~~~~~~ 153 (185)
.+......+ .+|++-=|.= ++.+++. ++ ..-.++.+..|. +.+..|+..|. .|+.+.+.+|+..+...
T Consensus 71 rl~~~d~~~-~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~-~~~~~r~~~r~~r~dd~~~~~~~R~~~y~~~ 148 (178)
T COG0563 71 RLDEADCKA-GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPE-ELLLERLLGRRVREDDNEETVKKRLKVYHEQ 148 (178)
T ss_pred HHHHCCCCC-EEEEECCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCH-HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 997506577-29998998369999999999986399855260244778-9999997366543346789999999998754
Q ss_pred CC----EEE--EC--CCHHHHHHHHHH
Q ss_conf 98----899--93--978999999999
Q gi|254781197|r 154 YS----FTI--VN--NHLPTACRQVGF 172 (185)
Q Consensus 154 fD----~~I--vN--ddle~a~~~l~~ 172 (185)
-+ |.- ++ ..+++.++++..
T Consensus 149 ~~pl~~~y~~~id~~~~i~~v~~~i~~ 175 (178)
T COG0563 149 TAPLIEYYSVTIDGSGEIEEVLADILK 175 (178)
T ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 683477775114677889999999998
No 40
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.32 E-value=2.9e-06 Score=57.18 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=83.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC--EEEEEE-E-CCCCCCCCCCC-CCCCCCCCHHHHHHHCCCCEEEEE-EEECC
Q ss_conf 718999889999989999999851898--179986-1-18889998323-553000123542111027636445-55048
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEY--LVMPVG-V-TTRRPRVDEKQ-YIDYRFISQSQFKGWKHTGLFIET-TKVRD 75 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~--~~~~is-~-TTR~~R~~E~~-g~dY~Fvs~e~F~~~i~~g~flE~-~~~~g 75 (185)
||||+|-|+|-||||||++.|....+. +.+++= + -..|+|...-+ |.. |.. ..-+. .....
T Consensus 2 G~II~LNG~SSSGKSsiAraLQ~~l~~p~~h~~vD~f~~~~p~~~~~~~~~~~--------~~~-----~~~~~~g~~~~ 68 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIE--------FDG-----DGGVSPGPEFR 68 (175)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHCCCCCCCCCCCCC--------CCC-----CCCCCCCHHHH
T ss_conf 74999868998988999999998476756884185898867631368754223--------487-----76635415699
Q ss_pred CEEEEECCCHHHHHHHCCCCCCCCCCCC---HHHH-HHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHH---H
Q ss_conf 6055443200233320123200243100---0133-2105531011222133289999988630342078999999---9
Q gi|254781197|r 76 EYYGYLKEDINNPMEHGYDILLILTHQG---LAPL-KKLYEDQVTSIFIAPPSEAELIQRRIKRREDTPFNLDPDL---F 148 (185)
Q Consensus 76 ~~YGt~~~~i~~~~~~g~~~il~id~~G---~~~l-k~~~~~~~~~IfI~pps~~~L~~RL~~R~~d~~~~i~~rl---~ 148 (185)
-.|.--..+|......|..+|+|-=.-+ .... +..-+..+..|=+.+| .+++++|=..||.-... ..++- .
T Consensus 69 ~~~~~~~~~iaa~a~aG~nvIvD~v~~~~~~l~d~~~~L~g~~v~~VGV~C~-l~~l~~RE~~RgDR~~G-~A~~q~~~V 146 (175)
T cd00227 69 LLEGAWYEAVAAMARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCP-GEVAEGRETARGDRVPG-QARKQARVV 146 (175)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEEEEECC-HHHHHHHHHHCCCCCCC-HHHHHHHHH
T ss_conf 9999999999999977998898631238088999999857992799998789-99999998745899964-678899984
Q ss_pred HHHHCCCEEEEC--CCHHHHHHHHH
Q ss_conf 876369889993--97899999999
Q gi|254781197|r 149 GKNHSYSFTIVN--NHLPTACRQVG 171 (185)
Q Consensus 149 ~~~~~fD~~IvN--ddle~a~~~l~ 171 (185)
.....||+.|.. ...++|-++|.
T Consensus 147 H~~~~YDleVDTs~~sp~eCA~~I~ 171 (175)
T cd00227 147 HAGVEYDLEVDTTHKTPIECARAIA 171 (175)
T ss_pred HCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf 3599885687799999999999999
No 41
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.30 E-value=7.8e-07 Score=60.52 Aligned_cols=39 Identities=26% Similarity=0.281 Sum_probs=27.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf 7189998899999899999998518981799861188899
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPR 41 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R 41 (185)
|++|+|-|+.||||||.++.|.+....-...+ +.||.|-
T Consensus 3 G~fIviEGiDGsGKsTq~~~L~~~L~~~g~~v-~~t~eP~ 41 (204)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLAERLEEQGRDV-VFTREPG 41 (204)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCE-EEEECCC
T ss_conf 31999988999989999999999999679978-9986999
No 42
>PRK01184 hypothetical protein; Provisional
Probab=98.30 E-value=4e-06 Score=56.37 Aligned_cols=162 Identities=15% Similarity=0.101 Sum_probs=79.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEE-EEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEEE
Q ss_conf 189998899999899999998518981799-8611888999832355300012354211102763644555048605544
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQVVLNSEYLVMP-VGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYL 81 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L~~~~~~~~~~-is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt~ 81 (185)
++|.|+|+-||||+|+++- +++. ++... .+-.-|. .-...|.. .+++.+...... ...-+|.-+- .
T Consensus 2 ~iIGlTG~iGSGKstva~i-~~e~-G~~vi~~~Divr~--~v~~~g~~---~~~~~~~~~~~~-----lR~~~G~~~~-a 68 (183)
T PRK01184 2 MIIIVTGMPGSGKGEFSKI-AREL-GIPVVVMGDVIRE--EVKKRGLP---PTDENIGKVATD-----LRKELGMDAV-A 68 (183)
T ss_pred EEEEEECCCCCCHHHHHHH-HHHC-CCEEEECCHHHHH--HHHHCCCC---CCHHHHHHHHHH-----HHHHHCCHHH-H
T ss_conf 3999968998878999999-9977-9939986077899--99983899---977899999999-----9987195589-9
Q ss_pred CCCHHHHHHHCC-CCCCC-C-CCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCH----HHHHHHHHH-----
Q ss_conf 320023332012-32002-4-31000133210553101122213328999998863034207----899999998-----
Q gi|254781197|r 82 KEDINNPMEHGY-DILLI-L-THQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDTP----FNLDPDLFG----- 149 (185)
Q Consensus 82 ~~~i~~~~~~g~-~~il~-i-d~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~d~~----~~i~~rl~~----- 149 (185)
+..+......+. .|+++ + .+.-+..+++.++ ..+.|.|.+| .+.-.+|+.+|+...+ ++...|..+
T Consensus 69 ~~~~~~i~~~~~~~~vidgir~~~E~~~~~~~~~-~~~li~V~A~-~~~R~eRl~~R~r~~D~~s~e~f~~rd~~E~~~~ 146 (183)
T PRK01184 69 IRTVPKIRELGSELVVVDGVRGDAEVEYFRKEFE-DFILVAIHAP-PETRFERLKKRGRSDDPKTWEELRERDERELSWG 146 (183)
T ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCC-CEEEEEEECC-HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 9999999703798289816787899999997469-8499999898-8899999984699889667999999999874467
Q ss_pred ---HHHCCCEEEECC-CHHHHHHHHHHHHHHHHH
Q ss_conf ---763698899939-789999999999999985
Q gi|254781197|r 150 ---KNHSYSFTIVNN-HLPTACRQVGFIREFVKQ 179 (185)
Q Consensus 150 ---~~~~fD~~IvNd-dle~a~~~l~~I~e~~~~ 179 (185)
.-..-||+|.|+ ++++..+++..+.+.+-.
T Consensus 147 i~~~i~~AD~vI~N~gsleel~~~v~~~l~~i~~ 180 (183)
T PRK01184 147 IGEAIALADYMIVNDCTLEEFKARVRKLLEEILS 180 (183)
T ss_pred HHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 7789987999998799899999999999999970
No 43
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.30 E-value=2.2e-06 Score=57.86 Aligned_cols=143 Identities=20% Similarity=0.212 Sum_probs=67.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC--CCCC--CHHHHHHHCCCCEEEEEEEECCCE
Q ss_conf 718999889999989999999851898179986118889998323553--0001--235421110276364455504860
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYID--YRFI--SQSQFKGWKHTGLFIETTKVRDEY 77 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~d--Y~Fv--s~e~F~~~i~~g~flE~~~~~g~~ 77 (185)
++=|+|+|++||||||+.+.|.+... +.+. -|-.-.. +..|.+ -.|- .++.|.+. |.
T Consensus 4 ~~nI~liG~~GsGKTtvgk~LA~~L~-~~fi--D~D~~Ie--~~~g~si~~if~~~Ge~~FR~~-------E~------- 64 (175)
T PRK00131 4 GPNIVLIGMMGAGKSTIGRLLAKRLG-YEFI--DTDHLIE--ARAGKSIPEIFEEEGEAGFREL-------EE------- 64 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC-CCCC--CCCHHHH--HHHCCCHHHHHHHHCHHHHHHH-------HH-------
T ss_conf 98089888999998999999999959-6902--3988999--7616999999998588999999-------99-------
Q ss_pred EEEECCCHHH-------HHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCC-------CCCHHHH
Q ss_conf 5544320023-------3320123200243100013321055310112221332899999886303-------4207899
Q gi|254781197|r 78 YGYLKEDINN-------PMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRR-------EDTPFNL 143 (185)
Q Consensus 78 YGt~~~~i~~-------~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~-------~d~~~~i 143 (185)
+.+.+ +++.|.-+++ +.+....|++ ..++|||.+ +.+++.+|+.+.. .+..+.+
T Consensus 65 -----~~l~~l~~~~~~VIstGGG~v~--~~~~~~~L~~----~g~vV~L~~-~~e~l~~Rl~~~~~RPll~~~~~~~~l 132 (175)
T PRK00131 65 -----EVLAELLQRHNLVISTGGGAVL--REENRALLRE----RGTVVYLDA-SFEELLRRLARDRNRPLLQTEDPKEKL 132 (175)
T ss_pred -----HHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHC----CCCEEEEEC-CHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf -----9999651479859974898226--8899999981----693799857-999999986489999878899869999
Q ss_pred ----HHHHHHHHHCCCEEEECC--CHHHHHHHHHHHHH
Q ss_conf ----999998763698899939--78999999999999
Q gi|254781197|r 144 ----DPDLFGKNHSYSFTIVNN--HLPTACRQVGFIRE 175 (185)
Q Consensus 144 ----~~rl~~~~~~fD~~IvNd--dle~a~~~l~~I~e 175 (185)
++|..-+....|++|..+ ..++++++|.+.++
T Consensus 133 ~~l~~~R~~~Y~~~Ad~~Idt~~~s~~ei~~~Ii~~L~ 170 (175)
T PRK00131 133 RALYEERDPLYEEVADLTIETDRRSPEEVVNEILELLE 170 (175)
T ss_pred HHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99999999989753899998999999999999999999
No 44
>PRK13975 thymidylate kinase; Provisional
Probab=98.28 E-value=2.2e-06 Score=57.83 Aligned_cols=38 Identities=29% Similarity=0.302 Sum_probs=31.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC
Q ss_conf 97189998899999899999998518981799861188899983
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDE 44 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E 44 (185)
|||+|++=|+-||||||.++.|.+.... .+||+|..+.
T Consensus 1 m~kfI~fEGiDGsGKsTq~~lL~~~L~~------~~t~epg~t~ 38 (198)
T PRK13975 1 MNKFIVFEGIDGSGKTTQAKLLAEKLNA------KFTFEPTDGK 38 (198)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC------CEEECCCCCC
T ss_conf 9988999899888699999999997387------4888979984
No 45
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.27 E-value=1.5e-06 Score=58.85 Aligned_cols=132 Identities=20% Similarity=0.244 Sum_probs=67.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC-CEEEEEE----ECCCCCCCC-CCCCCCCCCCCHHHHHH--------HCCCCEEEE
Q ss_conf 899988999998999999985189-8179986----118889998-32355300012354211--------102763644
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSE-YLVMPVG----VTTRRPRVD-EKQYIDYRFISQSQFKG--------WKHTGLFIE 69 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~-~~~~~is----~TTR~~R~~-E~~g~dY~Fvs~e~F~~--------~i~~g~flE 69 (185)
||-|+|+|||||||++++|.+..+ ....+++ |-.+..++- |.++.+|. ..+.|+. .+.+|+=++
T Consensus 10 iIgIaG~SgSGKTTv~~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d--~p~A~D~dLl~~~L~~L~~g~~v~ 87 (218)
T COG0572 10 IIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYD--HPEAFDLDLLIEHLKDLKQGKPVD 87 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHCCHHHCCCCCCC--CHHHHCHHHHHHHHHHHHCCCCCC
T ss_conf 999867987788999999999828675247652232025301667553785744--823436899999999997699224
Q ss_pred EEEECCCEEEEECCCHHHH-HHHCCCCCCCCCCCCHHHH-----HHCCCCCHHHHHHCCCCHHHHHHHHH----HCCCCC
Q ss_conf 5550486055443200233-3201232002431000133-----21055310112221332899999886----303420
Q gi|254781197|r 70 TTKVRDEYYGYLKEDINNP-MEHGYDILLILTHQGLAPL-----KKLYEDQVTSIFIAPPSEAELIQRRI----KRREDT 139 (185)
Q Consensus 70 ~~~~~g~~YGt~~~~i~~~-~~~g~~~il~id~~G~~~l-----k~~~~~~~~~IfI~pps~~~L~~RL~----~R~~d~ 139 (185)
--. +.+-=|+-. . ... +....++| ++|...| ++.+. +.||+.+|....+.+|+. +||.+-
T Consensus 88 ~P~-yd~~~~~r~-~-~~i~~~p~~VII----vEGi~~l~d~~lr~~~d---~kIfvdt~~D~RliRri~RD~~~rg~~~ 157 (218)
T COG0572 88 LPV-YDYKTHTRE-P-ETIKVEPNDVVI----VEGILLLYDERLRDLMD---LKIFVDTDADVRLIRRIKRDVQERGRDL 157 (218)
T ss_pred CCC-CCHHCCCCC-C-CCCCCCCCCEEE----EECCCCCCCHHHHHHCC---EEEEEECCCCHHHHHHHHHHHHHHCCCH
T ss_conf 564-203136325-7-733138972899----94230015076776606---7899977832788998887798819998
Q ss_pred HHHHHHHH
Q ss_conf 78999999
Q gi|254781197|r 140 PFNLDPDL 147 (185)
Q Consensus 140 ~~~i~~rl 147 (185)
+..+++-.
T Consensus 158 ~~vi~qy~ 165 (218)
T COG0572 158 ESVIEQYV 165 (218)
T ss_pred HHHHHHHH
T ss_conf 99999999
No 46
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.26 E-value=7.6e-07 Score=60.58 Aligned_cols=147 Identities=16% Similarity=0.189 Sum_probs=67.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEE-ECCCEEEE
Q ss_conf 71899988999998999999985189817998611888999832355300012354211102763644555-04860554
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTK-VRDEYYGY 80 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~-~~g~~YGt 80 (185)
|.+|+++|.||||||||++.|......- |..-.+++-+++.+......|-.-.. -+...
T Consensus 7 g~viW~TGLsGSGKTTiA~~l~~~L~~~-----------------g~~~~~LDGD~lR~~~~~~gfs~~~R~~n~~r--- 66 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLK-----------------YSNVIYLDGDELREIFGHSGYDKESRIEMALK--- 66 (176)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHC-----------------CCCEEEECCHHHHHHHCCCCCCHHHHHHHHHH---
T ss_conf 6799978999998999999999999975-----------------99779988689998736589899999999999---
Q ss_pred ECCCHHH-HHHHCCCCCCCC-CCC-CHHH-HHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH------
Q ss_conf 4320023-332012320024-310-0013-32105531011222133289999988630342078999999987------
Q gi|254781197|r 81 LKEDINN-PMEHGYDILLIL-THQ-GLAP-LKKLYEDQVTSIFIAPPSEAELIQRRIKRREDTPFNLDPDLFGK------ 150 (185)
Q Consensus 81 ~~~~i~~-~~~~g~~~il~i-d~~-G~~~-lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~d~~~~i~~rl~~~------ 150 (185)
...+-. ..++|.+||+.. .+. ..+. .|+..+ +.+-|||.+| .+++++| |...-..+-....
T Consensus 67 -~~~lak~l~~~g~~vIvs~isp~~~~R~~~R~~~~-~~~EVyv~~p-le~~~~R------D~KgLY~ka~~g~i~n~~G 137 (176)
T PRK05541 67 -RAKLAAFLADQGMIVIVTTISMFNEIYAYNRKHLP-NYFEVYLKCD-MEELIRR------DQKGLYTKALKGEISNVVG 137 (176)
T ss_pred -HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCC-CCEEEEEECC-HHHHHHC------CCHHHHHHHHCCCCCCCCC
T ss_conf -99999998646980367522798999999997488-7689999489-9999873------8541789987598889610
Q ss_pred ------HHCCCEEEECCC---HHHHHHHHHHHHHHHHHC
Q ss_conf ------636988999397---899999999999999852
Q gi|254781197|r 151 ------NHSYSFTIVNNH---LPTACRQVGFIREFVKQH 180 (185)
Q Consensus 151 ------~~~fD~~IvNdd---le~a~~~l~~I~e~~~~~ 180 (185)
...-|.+|+|++ +++++++ |++.++.+
T Consensus 138 id~pye~P~~~~~i~~t~~~s~~e~~~~---Il~~lk~r 173 (176)
T PRK05541 138 VDIPFDEPKADLVIDNSCRTSLDEKVDL---ILNKLKLR 173 (176)
T ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHH---HHHHHHHH
T ss_conf 5689999899989879999899999999---99999970
No 47
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.26 E-value=3.4e-06 Score=56.79 Aligned_cols=109 Identities=19% Similarity=0.269 Sum_probs=57.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEE--ECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEEE
Q ss_conf 8999889999989999999851898179986--11888999832355300012354211102763644555048605544
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLVMPVG--VTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYL 81 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~~~is--~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt~ 81 (185)
+|.|+||+||||||+++.|.+... +.+ +| ++=|.+- -|. | +|-++|.+..+.+--+- +-+-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g-l~~-vsaG~iFR~~A-~e~-g-----msl~ef~~~AE~~p~iD--------~~iD 64 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG-LKL-VSAGTIFREMA-RER-G-----MSLEEFSRYAEEDPEID--------KEID 64 (179)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHC-CCE-EECCHHHHHHH-HHC-C-----CCHHHHHHHHHCCCHHH--------HHHH
T ss_conf 799617999970279999999829-715-62127999999-983-9-----99999999875192166--------9988
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 3200233320123200243100013321055310112221332899999886303
Q gi|254781197|r 82 KEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRR 136 (185)
Q Consensus 82 ~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~ 136 (185)
..+ ..+....+|+++-...|- +-+ +...+.||+.+| +++-.+|...|.
T Consensus 65 ~rq--~e~a~~~nvVlegrLA~W--i~k--~~adlkI~L~Ap-l~vRa~Ria~RE 112 (179)
T COG1102 65 RRQ--KELAKEGNVVLEGRLAGW--IVR--EYADLKIWLKAP-LEVRAERIAKRE 112 (179)
T ss_pred HHH--HHHHHCCCEEEHHHHHHH--HHC--CCCCEEEEEECC-HHHHHHHHHHHC
T ss_conf 999--999872895870045788--733--565468888575-999999999860
No 48
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.22 E-value=4.8e-06 Score=55.93 Aligned_cols=151 Identities=15% Similarity=0.103 Sum_probs=68.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC--CCCC--CHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 9718999889999989999999851898179986118889998323553--0001--23542111027636445550486
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYID--YRFI--SQSQFKGWKHTGLFIETTKVRDE 76 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~d--Y~Fv--s~e~F~~~i~~g~flE~~~~~g~ 76 (185)
|.+-|+|+|+.||||||+.+.|.+.. ++.+. -|-+-.- +..|.. -.|- .++.|.++-. +.+.. .
T Consensus 1 M~~~I~LiG~mGsGKstiGk~LA~~L-~~~fi--D~D~~Ie--~~~g~sI~eif~~~Ge~~FR~~E~--~~l~~--l--- 68 (172)
T PRK03731 1 MTQPLFLVGPRGCGKTTVGMALAQAL-GYRFV--DTDLWLQ--STLQMTVAEIVEREGWAGFRARES--AALEA--V--- 68 (172)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH-CCCEE--ECCHHHH--HHHCCCHHHHHHHHCHHHHHHHHH--HHHHH--H---
T ss_conf 99988998899998899999999985-99979--7869999--883989999999839899999999--99998--4---
Q ss_pred EEEEECCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHH------C----CCCCHHHHH--
Q ss_conf 0554432002333201232002431000133210553101122213328999998863------0----342078999--
Q gi|254781197|r 77 YYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIK------R----REDTPFNLD-- 144 (185)
Q Consensus 77 ~YGt~~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~------R----~~d~~~~i~-- 144 (185)
+ . -..+++.|.-+++. .+....|++ +..+|||.+ +.+.+.+|+.. | +.+..+.+.
T Consensus 69 ---~-~--~~~VIstGGG~v~~--~~n~~~L~~----~g~vv~L~~-~~~~l~~Rl~~~~~~~~RPll~~~~~~~~i~~l 135 (172)
T PRK03731 69 ---T-A--PSTVVATGGGIILT--EENRAFMRN----NGIVIYLCA-PVSVLANRLEADPEEDQRPTLTGKPLSEEVAEV 135 (172)
T ss_pred ---C-C--CCEEEEECCCCCCC--HHHHHHHHH----CCEEEEEEC-CHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf ---2-7--88289807864268--999999996----899999979-999999998138778989878899879999999
Q ss_pred --HHHHHHHHCCCEEEECC-CHHHHHHHHHHHHHHHHH
Q ss_conf --99998763698899939-789999999999999985
Q gi|254781197|r 145 --PDLFGKNHSYSFTIVNN-HLPTACRQVGFIREFVKQ 179 (185)
Q Consensus 145 --~rl~~~~~~fD~~IvNd-dle~a~~~l~~I~e~~~~ 179 (185)
+|..-+...-|++|.++ +.++.+++ |++.+++
T Consensus 136 ~~~R~~~Y~~~a~~ii~~~~~~~~i~~~---Il~~L~e 170 (172)
T PRK03731 136 LAERDALYREVAHHIIDATQPPSQVVSE---ILSALAQ 170 (172)
T ss_pred HHHHHHHHHHHCCEEECCCCCHHHHHHH---HHHHHHH
T ss_conf 9999999998489988798999999999---9998732
No 49
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.20 E-value=3.1e-05 Score=51.18 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=22.5
Q ss_pred CCCEEE-EECCCCCCHHHHHHHHHHHCCC
Q ss_conf 971899-9889999989999999851898
Q gi|254781197|r 1 MAHIFV-LIGASGVGETTIAKQVVLNSEY 28 (185)
Q Consensus 1 m~kiiv-i~GpSGsGK~tl~~~L~~~~~~ 28 (185)
|.+++| |-|||||||+|+++.|.+....
T Consensus 2 ~~~iIIaIDGpagSGKST~ak~lA~~L~~ 30 (225)
T PRK00023 2 MKAPVIAIDGPAGSGKGTVAKILAKKLGF 30 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 98978996589867878999999999398
No 50
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.19 E-value=2e-06 Score=58.14 Aligned_cols=150 Identities=12% Similarity=0.083 Sum_probs=69.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCC-EEEEEEEECCCEEEE
Q ss_conf 7189998899999899999998518981799861188899983235530001235421110276-364455504860554
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTG-LFIETTKVRDEYYGY 80 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g-~flE~~~~~g~~YGt 80 (185)
|-+|+++|.||||||||++.|......... .-.+++-+.+...+..+ .|=..... -+.--
T Consensus 4 g~viWltGlsgSGKTTia~~l~~~L~~~~~-----------------~~~~LDGD~lR~~l~~~lgfs~~dR~-~n~~r- 64 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTISHALAEKLRARGY-----------------PVEVLDGDIVRTNLSKGLGFSKEDRD-TNIRR- 64 (175)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCC-----------------CEEEECCHHHHHHHCCCCCCCHHHHH-HHHHH-
T ss_conf 889998898999999999999999998699-----------------67997768888753678898989999-99999-
Q ss_pred ECCCH-HHHHHHCCCCCCCC-CCC-CHH-HHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHH-H-------
Q ss_conf 43200-23332012320024-310-001-332105531011222133289999988630342078999999-9-------
Q gi|254781197|r 81 LKEDI-NNPMEHGYDILLIL-THQ-GLA-PLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDTPFNLDPDL-F------- 148 (185)
Q Consensus 81 ~~~~i-~~~~~~g~~~il~i-d~~-G~~-~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~d~~~~i~~rl-~------- 148 (185)
...+ ....++|.+||+.. .|- ..+ ..|+..+ +.+-|||.+| .+++++|= ... +-++- .
T Consensus 65 -~~~la~~l~~~g~~vIvs~isp~~~~R~~~r~~~~-~~~EIyv~~~-l~~~~~RD------~Kg-LY~ka~~g~i~n~~ 134 (175)
T PRK00889 65 -IGFVAHLLTRHGVIVLVSAISPYRETREEVRGTIG-NFVEVFVNAP-LEVCEQRD------VKG-LYAKARAGEIKHFT 134 (175)
T ss_pred -HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCC-CCEEEEECCC-HHHHHHCC------HHH-HHHHHHCCCCCCCC
T ss_conf -99999999818986888504799999999998578-7669984288-89998807------054-77897648778840
Q ss_pred ------HHHHCCCEEEECC--CHHHHHHHHHHHHHHHHHCCCC
Q ss_conf ------8763698899939--7899999999999999852364
Q gi|254781197|r 149 ------GKNHSYSFTIVNN--HLPTACRQVGFIREFVKQHRII 183 (185)
Q Consensus 149 ------~~~~~fD~~IvNd--dle~a~~~l~~I~e~~~~~~~~ 183 (185)
......|.+|.|+ ++++++++ |++++++.-++
T Consensus 135 Gid~~yE~P~~pdl~IdT~~~si~~~~~~---Ii~~L~~~g~~ 174 (175)
T PRK00889 135 GIDDPYEPPLNPEVECRTDLESLEESVAK---VLQKLEELGYL 174 (175)
T ss_pred CCCCCCCCCCCCEEEEECCCCCHHHHHHH---HHHHHHHCCCC
T ss_conf 05689999999806987999999999999---99999985976
No 51
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=98.19 E-value=8e-06 Score=54.60 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=19.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 189998899999899999998518
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
.||-|+||+||||||+++.|++..
T Consensus 35 ~lIgIaG~pGSGKSTlA~~l~~~L 58 (230)
T PRK09270 35 TVVGIAGPPGAGKSTLAETLWEAL 58 (230)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899998999889999999999998
No 52
>PRK13974 thymidylate kinase; Provisional
Probab=98.17 E-value=3.3e-06 Score=56.82 Aligned_cols=169 Identities=17% Similarity=0.156 Sum_probs=77.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC--CE--EEEEEECCCCCCCCCCCCCC--CCCCCHH---HHHHHCCCCEEEEEEE
Q ss_conf 71899988999998999999985189--81--79986118889998323553--0001235---4211102763644555
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE--YL--VMPVGVTTRRPRVDEKQYID--YRFISQS---QFKGWKHTGLFIETTK 72 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~--~~--~~~is~TTR~~R~~E~~g~d--Y~Fvs~e---~F~~~i~~g~flE~~~ 72 (185)
|++|++-|.-||||||.++.|.+... ++ ...-..+||.|-... -|.- =++.... .+..+.. .++-.
T Consensus 3 G~fIv~EGiDGsGKsTq~~~L~~~L~~~g~~~~~~~~~~~rePg~t~-~g~~ir~~l~~~~~~~~~~~~~e--~lLf~-- 77 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTL-LGKSLRELLLDTSKDNSPSPLAE--LLLYA-- 77 (212)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC-HHHHHHHHHHCCCCCCCCCHHHH--HHHHH--
T ss_conf 41999889999989999999999998658753586157714999980-69999999806654568887999--99999--
Q ss_pred ECCCEEEEECCCHHHHHHHCCCCCCCCC------CCC---------HHHHHHC-----CCCCHHHHHHCCCCHHHHHHHH
Q ss_conf 0486055443200233320123200243------100---------0133210-----5531011222133289999988
Q gi|254781197|r 73 VRDEYYGYLKEDINNPMEHGYDILLILT------HQG---------LAPLKKL-----YEDQVTSIFIAPPSEAELIQRR 132 (185)
Q Consensus 73 ~~g~~YGt~~~~i~~~~~~g~~~il~id------~~G---------~~~lk~~-----~~~~~~~IfI~pps~~~L~~RL 132 (185)
...+=.....|...+.+|+++|+|== -|| ...+.+. .|+ .++|+..| .++..+|.
T Consensus 78 --AdR~e~~~~~I~paL~~G~iVI~DRY~~St~AYQg~~~g~~~~~i~~l~~~~~~~~~PD--lt~~LDv~-~e~a~~R~ 152 (212)
T PRK13974 78 --ADRAQHVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPD--LTFFLEIS-VEESIRRR 152 (212)
T ss_pred --HHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC--EEEEECCC-HHHHHHHH
T ss_conf --99999999999999837999997883235999988626999999999999874799999--89997697-58899988
Q ss_pred HHCCCCCHH--------HHHHHHHHHHHCCCEEEEC--CCHHHHHHHHH-HHHHHHHHC
Q ss_conf 630342078--------9999999876369889993--97899999999-999999852
Q gi|254781197|r 133 IKRREDTPF--------NLDPDLFGKNHSYSFTIVN--NHLPTACRQVG-FIREFVKQH 180 (185)
Q Consensus 133 ~~R~~d~~~--------~i~~rl~~~~~~fD~~IvN--ddle~a~~~l~-~I~e~~~~~ 180 (185)
.+|+.+..+ .+........++..++++| .++++..++|. .|.++++.+
T Consensus 153 ~~~~~dr~e~e~~~f~~kVr~~y~~la~~~~~~~IDa~~~ieeV~~~I~~~i~~~~~~~ 211 (212)
T PRK13974 153 KNRKPDRIEAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETLLNNFSNK 211 (212)
T ss_pred HCCCCCCHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 47763431016199999999999998473987999899999999999999999997347
No 53
>PRK13946 shikimate kinase; Provisional
Probab=98.16 E-value=7.1e-06 Score=54.90 Aligned_cols=147 Identities=14% Similarity=0.223 Sum_probs=71.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC--CCCC--CHHHHHHHCCCCEEEEEEEECCCE
Q ss_conf 718999889999989999999851898179986118889998323553--0001--235421110276364455504860
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYID--YRFI--SQSQFKGWKHTGLFIETTKVRDEY 77 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~d--Y~Fv--s~e~F~~~i~~g~flE~~~~~g~~ 77 (185)
+|=|+|+|+.||||||+.+.|.+... +.+. -|-.-. -+..|.. -.|- .++.|.++ |.
T Consensus 20 kknIvLIG~mGsGKStvGk~LA~~L~-~~fi--D~D~~I--E~~~g~sI~eIF~~~GE~~FR~~-------E~------- 80 (195)
T PRK13946 20 KRTVVLVGLMGAGKSTVGRRLATMLG-LPFL--DADTEI--ERAARMTIPEIFATYGEPEFRDL-------ER------- 80 (195)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHC-CCEE--ECHHHH--HHHHCCCHHHHHHHHCHHHHHHH-------HH-------
T ss_conf 99589989999988999999999979-7989--885999--99809989999998697999998-------99-------
Q ss_pred EEEECCCHHH-------HHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCC-------CCCHHH-
Q ss_conf 5544320023-------3320123200243100013321055310112221332899999886303-------420789-
Q gi|254781197|r 78 YGYLKEDINN-------PMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRR-------EDTPFN- 142 (185)
Q Consensus 78 YGt~~~~i~~-------~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~-------~d~~~~- 142 (185)
..+.. ++..|.-+++ +.+....|++ +.++|||.+ +.+++.+|+.... .+..+.
T Consensus 81 -----~~l~~l~~~~~~VIstGGG~v~--~~~n~~~L~~----~g~vI~L~~-~~e~l~~Rl~~~~~RPLl~~~~~~~~l 148 (195)
T PRK13946 81 -----RVIARLLKGGPLVLATGGGAFM--NEETRAAIRE----KGISVWLKA-DLDVLWERVSRRDTRPLLRTADPKETL 148 (195)
T ss_pred -----HHHHHHHCCCCEEEECCCCCCC--CHHHHHHHHH----CCEEEEEEC-CHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf -----9999986489879975874236--8999999995----796899849-999999997289999989998879999
Q ss_pred ---HHHHHHHHHHCCCEEEECC--CHHHHHHHH-HHHHHHHHHC
Q ss_conf ---9999998763698899939--789999999-9999999852
Q gi|254781197|r 143 ---LDPDLFGKNHSYSFTIVNN--HLPTACRQV-GFIREFVKQH 180 (185)
Q Consensus 143 ---i~~rl~~~~~~fD~~IvNd--dle~a~~~l-~~I~e~~~~~ 180 (185)
.+.|..-+.. .|++|..+ ..++.+++| +.|..+++.+
T Consensus 149 ~~l~~~R~~lY~~-Ad~~I~t~~~s~~~ia~eIi~~L~~~~~~~ 191 (195)
T PRK13946 149 ARLMEERYPVYAQ-ADLTVESRDVPHEVIADEVIEALAAYLEVE 191 (195)
T ss_pred HHHHHHHHHHHHH-CCEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999997-898988998999999999999999998566
No 54
>KOG3354 consensus
Probab=98.15 E-value=1.5e-06 Score=58.81 Aligned_cols=106 Identities=23% Similarity=0.405 Sum_probs=62.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCC-EEEE--
Q ss_conf 8999889999989999999851898179986118889998323553000123542111027636445550486-0554--
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDE-YYGY-- 80 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~-~YGt-- 80 (185)
.|+++|+||+||+|+.+.|.+... +.| .||-||| +.+.-++|.+ |-=+ +++ .++-
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l~-~~F-------------~dgDd~H--p~~NveKM~~-GipL-----nD~DR~pWL~ 71 (191)
T KOG3354 14 VIVVMGVSGSGKSTIGKALSEELG-LKF-------------IDGDDLH--PPANVEKMTQ-GIPL-----NDDDRWPWLK 71 (191)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHC-CCC-------------CCCCCCC--CHHHHHHHHC-CCCC-----CCCCCCHHHH
T ss_conf 599983588774459999999858-862-------------4555579--8788998836-9988-----8532117999
Q ss_pred -ECCCHHHHHHHCCCCCCCCCCCCHHHHHHCC----------------C-CCHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf -4320023332012320024310001332105----------------5-3101122213328999998863034
Q gi|254781197|r 81 -LKEDINNPMEHGYDILLILTHQGLAPLKKLY----------------E-DQVTSIFIAPPSEAELIQRRIKRRE 137 (185)
Q Consensus 81 -~~~~i~~~~~~g~~~il~id~~G~~~lk~~~----------------~-~~~~~IfI~pps~~~L~~RL~~R~~ 137 (185)
--.+....+..|+-+++-+. + ||+.| + ....+||+.. |.+++.+||.+|..
T Consensus 72 ~i~~~~~~~l~~~q~vVlACS---a--LKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~-s~evi~~Rl~~R~g 140 (191)
T KOG3354 72 KIAVELRKALASGQGVVLACS---A--LKKKYRDILRHSLKDGKPGKCPESQLHFILLSA-SFEVILKRLKKRKG 140 (191)
T ss_pred HHHHHHHHHHHCCCEEEEEHH---H--HHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEC-CHHHHHHHHHHCCC
T ss_conf 999999987632781899728---8--889999999732114786678640588863304-29999999840666
No 55
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.14 E-value=1.5e-06 Score=58.91 Aligned_cols=62 Identities=16% Similarity=0.078 Sum_probs=46.2
Q ss_pred HHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH------HHCCCEEEECC-CHHHHHHHHHHHHHHHH
Q ss_conf 11222133289999988630342078999999987------63698899939-78999999999999998
Q gi|254781197|r 116 TSIFIAPPSEAELIQRRIKRREDTPFNLDPDLFGK------NHSYSFTIVNN-HLPTACRQVGFIREFVK 178 (185)
Q Consensus 116 ~~IfI~pps~~~L~~RL~~R~~d~~~~i~~rl~~~------~~~fD~~IvNd-dle~a~~~l~~I~e~~~ 178 (185)
..|+|.+| .+.-.+|+.+|+.-+.+++.+|+... ...-|++|.|+ +++...+++..|.+.+-
T Consensus 128 ~vi~V~a~-~~~r~~Rl~~R~~~~~~~~~~r~~~Q~~~~~k~~~aD~vI~N~~s~e~l~~qi~~il~~i~ 196 (199)
T PRK00081 128 RVLVVDVP-PEIQLERLMARDGLSEEEAEAILASQMSREEKLARADDVIDNNGDLEDLRKQVERLLAELL 196 (199)
T ss_pred EEEEEECC-HHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 57999869-9999999997489989999999995899899999699999899999999999999999999
No 56
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.13 E-value=1.3e-05 Score=53.41 Aligned_cols=166 Identities=19% Similarity=0.220 Sum_probs=86.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEC-----CCCCCCCCCCCCCCCCCCHHHHHH---HCCCC-------E
Q ss_conf 71899988999998999999985189817998611-----888999832355300012354211---10276-------3
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVT-----TRRPRVDEKQYIDYRFISQSQFKG---WKHTG-------L 66 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~T-----TR~~R~~E~~g~dY~Fvs~e~F~~---~i~~g-------~ 66 (185)
+.|+.|=|+||+|||||+.+|.... ++..+++.- -||.=.-|.. -. +-...|.. +.... .
T Consensus 89 p~IILIGGasGVGkStIA~ElA~rL-gI~~visTD~IREvlR~ii~~~l~-Pt---Lh~Ssy~Awkalr~~~~~~piiaG 163 (299)
T COG2074 89 PLIILIGGASGVGKSTIAGELARRL-GIRSVISTDSIREVLRKIISPELL-PT---LHTSSYDAWKALRDPTDENPIIAG 163 (299)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHC-CCCEEECCHHHHHHHHHHCCHHHC-CH---HHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 7599961788777257999999972-986100424799999973797745-53---567577999983689999613131
Q ss_pred EEEEEEECCCEEEEECCCHHHHHHHCCCCCCCCCCCCHHH----HHH-CCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHH
Q ss_conf 6445550486055443200233320123200243100013----321-05531011222133289999988630342078
Q gi|254781197|r 67 FIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAP----LKK-LYEDQVTSIFIAPPSEAELIQRRIKRREDTPF 141 (185)
Q Consensus 67 flE~~~~~g~~YGt~~~~i~~~~~~g~~~il~id~~G~~~----lk~-~~~~~~~~IfI~pps~~~L~~RL~~R~~d~~~ 141 (185)
|..+++. -.=|+.. -|+.++.+|.+++++ |+.- ++. .++.+++..++..++.+..+.|+.+|..++-.
T Consensus 164 F~dqa~~--V~~GI~~-VI~RAi~eG~~lIIE----GvHlVPg~i~~~~~~~n~~~~~l~i~dee~Hr~RF~~R~~~t~~ 236 (299)
T COG2074 164 FEDQASA--VMVGIEA-VIERAIEEGEDLIIE----GVHLVPGLIKEEALGNNVFMFMLYIADEELHRERFYDRIRYTHA 236 (299)
T ss_pred HHHHHHH--HHHHHHH-HHHHHHHCCCCEEEE----EEEECCCCCCHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHHC
T ss_conf 7877679--9988999-999998537535887----42115002167661355178999838878999999998888760
Q ss_pred ---------------HHHHHHHHHHHCCCE-EEECCCHHHHHHHH-HHHHHHHHH
Q ss_conf ---------------999999987636988-99939789999999-999999985
Q gi|254781197|r 142 ---------------NLDPDLFGKNHSYSF-TIVNNHLPTACRQV-GFIREFVKQ 179 (185)
Q Consensus 142 ---------------~i~~rl~~~~~~fD~-~IvNddle~a~~~l-~~I~e~~~~ 179 (185)
.|..-+.....+|+. +|.|+|++++++++ ..|.+++.+
T Consensus 237 ~rp~~Ryl~yf~EiR~I~Dyl~~~Are~gVPvI~n~di~etv~~il~~i~~~~~r 291 (299)
T COG2074 237 SRPGGRYLEYFKEIRTIHDYLVERAREHGVPVIENDDIDETVDRILEDIRKRTVR 291 (299)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 5965679999999999999999988865998112531999999999999999888
No 57
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.10 E-value=6.4e-06 Score=55.16 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=23.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 899988999998999999985189817
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLV 30 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~ 30 (185)
||-|+|+||||||||++.|.+..++..
T Consensus 1 iIgIaG~S~SGKTTla~~L~~~l~~~~ 27 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCC 27 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCE
T ss_conf 989968888759999999999879988
No 58
>PRK12289 ribosome-associated GTPase; Reviewed
Probab=98.08 E-value=1.3e-06 Score=59.15 Aligned_cols=24 Identities=29% Similarity=0.632 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
+|+-|++||||||||||+|.|...
T Consensus 171 ~k~tv~~G~SGVGKSSLIN~L~p~ 194 (351)
T PRK12289 171 NKITVVAGPSGVGKSSLINRLIPD 194 (351)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCC
T ss_conf 986999817988788988763741
No 59
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein; InterPro: IPR011918 This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins ..
Probab=98.05 E-value=5.7e-06 Score=55.47 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=53.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH---CCCCEEEEEEEECCC-E
Q ss_conf 718999889999989999999851898179986118889998323553000123542111---027636445550486-0
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGW---KHTGLFIETTKVRDE-Y 77 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~---i~~g~flE~~~~~g~-~ 77 (185)
|.-+.|+||||+|||||.+.|+.-|+--...|. .||+|=.=.++++|.+. +.++--+-.+.+..| -
T Consensus 366 GEtvAlVGPSGAGKSTlf~LLLRFYDP~~G~il----------LDGvd~r~~dP~~lR~~~ALVpQdp~lFa~Sv~eNIR 435 (576)
T TIGR02204 366 GETVALVGPSGAGKSTLFQLLLRFYDPQSGRIL----------LDGVDIRDLDPADLRARIALVPQDPALFAASVLENIR 435 (576)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEE----------ECCCCHHHCCCHHHHHHCCCCCCCCCCCHHCCHHHHC
T ss_conf 765887668876279999999860488876577----------4664140168087883444025886410203044213
Q ss_pred EEEECCCHHH
Q ss_conf 5544320023
Q gi|254781197|r 78 YGYLKEDINN 87 (185)
Q Consensus 78 YGt~~~~i~~ 87 (185)
||-+-.+=++
T Consensus 436 yGrpDAs~~~ 445 (576)
T TIGR02204 436 YGRPDASDEE 445 (576)
T ss_pred CCCCCCCHHH
T ss_conf 5996666689
No 60
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.05 E-value=4e-06 Score=56.35 Aligned_cols=71 Identities=11% Similarity=0.099 Sum_probs=45.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHH---HCCCCEEEEEEEECCC-E
Q ss_conf 71899988999998999999985189817998611888999832355300012354211---1027636445550486-0
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKG---WKHTGLFIETTKVRDE-Y 77 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~---~i~~g~flE~~~~~g~-~ 77 (185)
|+.+.|+||||||||||++.|+.-++--...|. .||+|..=++.+...+ .+.++-|+-.+++..| .
T Consensus 367 Ge~vaiVG~SGsGKSTL~~LL~r~ydp~~G~I~----------idG~di~~~~~~~lr~~i~~V~Q~~~LF~~TI~eNi~ 436 (575)
T PRK11160 367 GEKVALLGRTGCGKSTLLQLLTRAWDPQQGEIL----------LNGQPIASYSEAALRQAISVVSQRVHLFSGTLRDNLL 436 (575)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE----------ECCEECCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 988999889997599999998623678998899----------9989756388899987613567776025886789987
Q ss_pred EEEEC
Q ss_conf 55443
Q gi|254781197|r 78 YGYLK 82 (185)
Q Consensus 78 YGt~~ 82 (185)
||-+.
T Consensus 437 ~g~~~ 441 (575)
T PRK11160 437 LAAPN 441 (575)
T ss_pred HCCCC
T ss_conf 25898
No 61
>PRK13947 shikimate kinase; Provisional
Probab=98.02 E-value=2.4e-05 Score=51.88 Aligned_cols=149 Identities=19% Similarity=0.203 Sum_probs=67.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC--CCC--CCHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 9718999889999989999999851898179986118889998323553--000--123542111027636445550486
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYID--YRF--ISQSQFKGWKHTGLFIETTKVRDE 76 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~d--Y~F--vs~e~F~~~i~~g~flE~~~~~g~ 76 (185)
|.+ |+|+|+.||||||+.+.|.+... +.|. -|-+-.- +..|.. =.| ..++.|.++ |.....-
T Consensus 1 mkn-I~LiG~mGsGKTtiGk~La~~L~-~~fi--D~D~~Ie--~~~g~sI~eIf~~~GE~~FR~~-------E~~~l~~- 66 (171)
T PRK13947 1 MKN-IVLIGFMGTGKTTVGKKVATTLS-FGFI--DTDKEIE--KMAGMTVSEIFEKDGEVRFRSL-------EKAAVRK- 66 (171)
T ss_pred CCC-EEEECCCCCCHHHHHHHHHHHHC-CCEE--ECHHHHH--HHCCCCHHHHHHHHCHHHHHHH-------HHHHHHH-
T ss_conf 985-89979999988999999999979-6989--8749999--8829988999998489999999-------9999997-
Q ss_pred EEEEECCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCC-------CCCHHHH----HH
Q ss_conf 055443200233320123200243100013321055310112221332899999886303-------4207899----99
Q gi|254781197|r 77 YYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRR-------EDTPFNL----DP 145 (185)
Q Consensus 77 ~YGt~~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~-------~d~~~~i----~~ 145 (185)
. ...-..+++.|.-+++ +.+....|++ +..+||+.+ +.+.+.+|+.+.. .+..+.+ ++
T Consensus 67 ~----~~~~~~VistGGG~v~--~~~n~~~l~~----~g~vi~L~~-~~~~l~~Rl~~~~~RPll~~~~~~~~l~~l~~~ 135 (171)
T PRK13947 67 A----ARLKNLVIATGGGVVL--NPENIVQLRK----NGVLICLVA-RPEVILRRIKKKKDRPLLMVGNPEERIRELLKE 135 (171)
T ss_pred H----CCCCCEEEECCCCCCC--CHHHHHHHHH----CCEEEEECC-CHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 4----0368979978985006--9999999996----898999739-999999997289999979899879999999999
Q ss_pred HHHHHHHCCCEEEECC--CHHHHHHHHHHHHH
Q ss_conf 9998763698899939--78999999999999
Q gi|254781197|r 146 DLFGKNHSYSFTIVNN--HLPTACRQVGFIRE 175 (185)
Q Consensus 146 rl~~~~~~fD~~IvNd--dle~a~~~l~~I~e 175 (185)
|..-+ ..-|++|..+ +.++.+++|-...+
T Consensus 136 R~~~Y-~~Ad~~I~~~~~s~~ei~~~Ii~~~~ 166 (171)
T PRK13947 136 REPFY-RFADFTIDTSDMTIDEVAEEIIKAYI 166 (171)
T ss_pred HHHHH-HHCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99999-97698988998999999999999999
No 62
>PRK00625 shikimate kinase; Provisional
Probab=98.02 E-value=5.6e-06 Score=55.49 Aligned_cols=132 Identities=14% Similarity=0.064 Sum_probs=68.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEE------ECCCCCCC--C---CCCCCCCCCCCHHHHHHHCCCCEEEEEEEE
Q ss_conf 999889999989999999851898179986------11888999--8---323553000123542111027636445550
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEYLVMPVG------VTTRRPRV--D---EKQYIDYRFISQSQFKGWKHTGLFIETTKV 73 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~~~~~is------~TTR~~R~--~---E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~ 73 (185)
|+++|+.||||||+.+.|.+... +.|+=+ ....+... . +.+| ++.|.++ |....
T Consensus 3 I~LIG~mGsGKStiGk~LA~~l~-~~FvD~D~~Ie~~~~~~i~~Si~eIf~~~G-------E~~FR~~-------E~~~l 67 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLS-LPFFDTDDLIVSNYHGALYSSPKEIYQAYG-------EEGFCEE-------EALAL 67 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC-CCEEECHHHHHHHHCCCCCCCHHHHHHHHC-------HHHHHHH-------HHHHH
T ss_conf 99989999988999999999939-995774999999868652356999999718-------9999999-------99999
Q ss_pred CCCEEEEECCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCC----CCH----HHHHH
Q ss_conf 4860554432002333201232002431000133210553101122213328999998863034----207----89999
Q gi|254781197|r 74 RDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRRE----DTP----FNLDP 145 (185)
Q Consensus 74 ~g~~YGt~~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~----d~~----~~i~~ 145 (185)
... +.. ..+++.|.-+++. .+....|++ +..+||+.+ +.+++.+|+.+|.. +.. +-.++
T Consensus 68 ~~l----~~~--~~VIstGGG~v~~--~~n~~~Lk~----~g~vV~L~~-~~e~i~~Rl~~rpl~~~~~~~~~l~~l~~e 134 (173)
T PRK00625 68 ESL----PVI--PSIVALGGGTLMH--EESYDHIRN----RGLLVLLSL-PIATIYQRLQKRGLPERLKKTPSLEEILTQ 134 (173)
T ss_pred HHH----CCC--CCEEECCCCCCCC--HHHHHHHHH----CCEEEEEEC-CHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 973----248--9689748850178--999999996----899999839-999999998269987778835799999999
Q ss_pred HHHHHHHCCCEEEECCCHH
Q ss_conf 9998763698899939789
Q gi|254781197|r 146 DLFGKNHSYSFTIVNNHLP 164 (185)
Q Consensus 146 rl~~~~~~fD~~IvNddle 164 (185)
|...+...-|++|.+|++.
T Consensus 135 R~~lY~~~AD~iI~~d~~s 153 (173)
T PRK00625 135 RIDRMREIADYIFSLDHVA 153 (173)
T ss_pred HHHHHHHHCCEEEECCCCC
T ss_conf 9999999799999689976
No 63
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.01 E-value=1.7e-06 Score=58.55 Aligned_cols=134 Identities=19% Similarity=0.216 Sum_probs=61.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEEECCC
Q ss_conf 99988999998999999985189817998611888999832355300012354211102763644555048605544320
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLKED 84 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt~~~~ 84 (185)
|+|.||+||||+|+++.|.+.+.-.++++.--=|..- ..+-. . -.+....+.+|.++--..+.. ...+.
T Consensus 2 i~l~G~PGsGKgTqa~~La~~~~~~~is~gdlLR~~~---~~~t~---~-g~~i~~~~~~G~lvp~~i~~~----l~~~~ 70 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEI---ASGTE---L-GKKAKEYIDSGKLVPDEIVIK----LLKER 70 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEECHHHHHHHHH---HCCCH---H-HHHHHHHHHCCCCCCHHHHHH----HHHHH
T ss_conf 8998999998799999999997984676889999999---74995---8-999999998799778999999----99999
Q ss_pred HHHHHHHCCCCCCCCCCCCHHH---HHHC---CCCCHHHHHHCCCCHHHHHHHHHHCC----------------------
Q ss_conf 0233320123200243100013---3210---55310112221332899999886303----------------------
Q gi|254781197|r 85 INNPMEHGYDILLILTHQGLAP---LKKL---YEDQVTSIFIAPPSEAELIQRRIKRR---------------------- 136 (185)
Q Consensus 85 i~~~~~~g~~~il~id~~G~~~---lk~~---~~~~~~~IfI~pps~~~L~~RL~~R~---------------------- 136 (185)
+...-. .+-+|+|==|.-..| +... ...--.+|++.. +.+++.+|+..|+
T Consensus 71 l~~~~~-~~g~ilDGfPR~~~Qa~~l~~~~~~~~~~~~vi~l~~-~~~~~~~Rl~~R~~~~~~g~~~~~~~~~~~~~~~~ 148 (194)
T cd01428 71 LKKPDC-KKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDV-PDEVLIERILGRRICPVSGRVYHLGKDDVTGEPLS 148 (194)
T ss_pred HHCCCC-CCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEC-CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 847654-3877874797989999999999973998788999966-89999999964676776666245566776566667
Q ss_pred ---CCCHHHHHHHHHHHH
Q ss_conf ---420789999999876
Q gi|254781197|r 137 ---EDTPFNLDPDLFGKN 151 (185)
Q Consensus 137 ---~d~~~~i~~rl~~~~ 151 (185)
.|+++.+.+|+..+.
T Consensus 149 ~R~DD~~e~i~~Rl~~y~ 166 (194)
T cd01428 149 QRSDDNEETIKKRLEVYK 166 (194)
T ss_pred CCCCCCHHHHHHHHHHHH
T ss_conf 888986999999999999
No 64
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=98.00 E-value=5.8e-06 Score=55.45 Aligned_cols=110 Identities=19% Similarity=0.353 Sum_probs=58.9
Q ss_pred CC-EEEEECCCCCCHHHHHHHHHH--HCCCEEEEEEECCCCCCCCCCCCCCCCCCCH--H-HHHHHCCCC----EEE--E
Q ss_conf 71-899988999998999999985--1898179986118889998323553000123--5-421110276----364--4
Q gi|254781197|r 2 AH-IFVLIGASGVGETTIAKQVVL--NSEYLVMPVGVTTRRPRVDEKQYIDYRFISQ--S-QFKGWKHTG----LFI--E 69 (185)
Q Consensus 2 ~k-iivi~GpSGsGK~tl~~~L~~--~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~--e-~F~~~i~~g----~fl--E 69 (185)
|+ |+||+||.|||||+|++.+.+ +.+.|++++-=-| ...|+-|.=--+|-- = =-+.|.+.+ -|| |
T Consensus 449 GpqIlClvGPPGVGKTSlg~SIA~ALnRkFvR~SlGG~~---DeAEIrGHRRTYvGAMPGriiQ~lk~~~t~NPl~LlDE 525 (941)
T TIGR00763 449 GPQILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVR---DEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLILLDE 525 (941)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEECCCE---EHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 876787207269542227899999968804999526722---03112786432034672578999876041588068620
Q ss_pred EEEEC--CCEEEEECCCHHHHHHHCCCCCCCCCCCCHHHHHHCC---CCC-HHHH--HHCCCC
Q ss_conf 55504--8605544320023332012320024310001332105---531-0112--221332
Q gi|254781197|r 70 TTKVR--DEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLY---EDQ-VTSI--FIAPPS 124 (185)
Q Consensus 70 ~~~~~--g~~YGt~~~~i~~~~~~g~~~il~id~~G~~~lk~~~---~~~-~~~I--fI~pps 124 (185)
=-... .-++|=|-+++.++| ||+=......+| |.. --++ ||...+
T Consensus 526 IDK~~~~~~~~GDPaSALLEvL----------DPEQN~~F~DHYldvp~DLS~V~CyFi~TAN 578 (941)
T TIGR00763 526 IDKIGLKSSFRGDPASALLEVL----------DPEQNNAFSDHYLDVPFDLSKVLCYFIATAN 578 (941)
T ss_pred EEEECCCCCCCCCHHHHHHHHC----------CHHHCCCCCCCCCCCCCCHHHHHHHEEECCC
T ss_conf 2200167886556378886412----------8643604255300234004200210002447
No 65
>PRK07429 phosphoribulokinase; Provisional
Probab=97.99 E-value=2.5e-05 Score=51.68 Aligned_cols=129 Identities=18% Similarity=0.227 Sum_probs=65.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC-EEEEEEEC-----CCCCCCCCCCCCCCCCCCHHHH--------HHHCCCCEEEE
Q ss_conf 8999889999989999999851898-17998611-----8889998323553000123542--------11102763644
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEY-LVMPVGVT-----TRRPRVDEKQYIDYRFISQSQF--------KGWKHTGLFIE 69 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~-~~~~is~T-----TR~~R~~E~~g~dY~Fvs~e~F--------~~~i~~g~flE 69 (185)
||-|+|-|||||||+++.|.+.++. ...+|+.- .|..|.- .|.+ +..++.| -+..++|+=++
T Consensus 10 IIGIAGgSGSGKTTv~r~I~~~fg~~~VtvI~~DdYhk~dr~~r~~--~~~t--~lhP~And~dLl~e~L~~Lk~Gk~I~ 85 (331)
T PRK07429 10 IIGVAGDSGCGKSTFLRRLADLFGEELVTVICLDDYHSLDRKQRKE--IGIT--ALDPRANNFDLMYEQLKALKTGQPIL 85 (331)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHH--CCCC--CCCCCHHCHHHHHHHHHHHHCCCCCC
T ss_conf 9998578877899999999998388877999478677788788987--1898--78964005999999999998599725
Q ss_pred EEEECCCEEEEECCCHHHHHHHCCCCCCCCCCCCHH-----HHHHCCCCCHHHHHHCCCCHHHHHHHHH----HCCCCCH
Q ss_conf 555048605544320023332012320024310001-----3321055310112221332899999886----3034207
Q gi|254781197|r 70 TTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLA-----PLKKLYEDQVTSIFIAPPSEAELIQRRI----KRREDTP 140 (185)
Q Consensus 70 ~~~~~g~~YGt~~~~i~~~~~~g~~~il~id~~G~~-----~lk~~~~~~~~~IfI~pps~~~L~~RL~----~R~~d~~ 140 (185)
--.| ++.=|+ ++.- ..+.-..++| ++|.. .+++.+. +.||+.|++..++.+|+. +||...+
T Consensus 86 ~PvY-dh~tg~-~~~~-~~I~P~~vII----vEGLh~L~~~~lR~l~D---lKIFVD~d~diR~~rRI~RDv~ERG~s~E 155 (331)
T PRK07429 86 KPIY-NHETGK-IDPP-EYIKPNKIVV----VEGLHPLYDERVRDLYD---FKVYLDPPDEVKIAWKIKRDMAERGHTYE 155 (331)
T ss_pred CCCC-CCCCCC-CCCC-EEECCCCEEE----EECCHHCCCHHHHHHCC---EEEEECCCHHHHHHHHHHHHHHHHCCCHH
T ss_conf 6523-564787-7886-6606886799----91612128798997549---37996487889999988877866189999
Q ss_pred HH---HHHH
Q ss_conf 89---9999
Q gi|254781197|r 141 FN---LDPD 146 (185)
Q Consensus 141 ~~---i~~r 146 (185)
.. +++|
T Consensus 156 ~Vl~qi~~R 164 (331)
T PRK07429 156 DVLAEIEKR 164 (331)
T ss_pred HHHHHHHHC
T ss_conf 999999851
No 66
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.98 E-value=8.9e-06 Score=54.33 Aligned_cols=69 Identities=16% Similarity=0.208 Sum_probs=46.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH---CCCCEEEEEEEECCC-E
Q ss_conf 718999889999989999999851898179986118889998323553000123542111---027636445550486-0
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGW---KHTGLFIETTKVRDE-Y 77 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~---i~~g~flE~~~~~g~-~ 77 (185)
|+.+.|+||||||||||++.|+.-+|. ...|. .||+|..=++.+++.+. +.++-++-.+++..| .
T Consensus 376 Ge~vaIVG~SGsGKSTl~~LL~g~~p~-~G~I~----------i~g~di~~i~~~~lr~~i~~V~Q~~~LF~~TI~eNI~ 444 (588)
T PRK11174 376 GQRVALVGPSGAGKTSLLNALLGFLPY-QGSLK----------INGIELRELDPESWRKHLSWVGQNPQLFHGTLRDNVL 444 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC-CCEEE----------ECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHHH
T ss_conf 978999899986499999999872898-83899----------9998603089999996603516667777662998653
Q ss_pred EEEE
Q ss_conf 5544
Q gi|254781197|r 78 YGYL 81 (185)
Q Consensus 78 YGt~ 81 (185)
||-+
T Consensus 445 ~g~~ 448 (588)
T PRK11174 445 LANP 448 (588)
T ss_pred CCCC
T ss_conf 3585
No 67
>PRK07261 topology modulation protein; Provisional
Probab=97.95 E-value=7.8e-06 Score=54.69 Aligned_cols=66 Identities=18% Similarity=0.232 Sum_probs=39.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEE-EEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEE--EEEEECCCEEE
Q ss_conf 99988999998999999985189--81799-861188899983235530001235421110276364--45550486055
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSE--YLVMP-VGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFI--ETTKVRDEYYG 79 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~--~~~~~-is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~fl--E~~~~~g~~YG 79 (185)
|.|+|+||||||||+++|.+... -+..= +-+. ||- + -.++++|.+++++ |+ +.+-..|+|..
T Consensus 3 I~IiG~sGsGKSTlAr~L~~~~~ip~~~LD~l~w~-----p~w---~---~~~~~e~~~~~~~--~~~~~~WIiDGny~~ 69 (171)
T PRK07261 3 IAIIGYSGSGKSTLARFLGQHYNCPVLHLDQLHFS-----SNW---Q---ERDDDDMIADISN--FLLKQDWIIEGNYSN 69 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEECCEEEC-----CCC---E---ECCHHHHHHHHHH--HHHCCCEEEECCCCC
T ss_conf 99988999868999999999879797970227888-----999---8---8889999999999--984898799478512
Q ss_pred EECC
Q ss_conf 4432
Q gi|254781197|r 80 YLKE 83 (185)
Q Consensus 80 t~~~ 83 (185)
|..+
T Consensus 70 ~~~~ 73 (171)
T PRK07261 70 CLYE 73 (171)
T ss_pred HHHH
T ss_conf 4777
No 68
>TIGR02673 FtsE cell division ATP-binding protein FtsE; InterPro: IPR005286 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=97.91 E-value=7.8e-06 Score=54.69 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|-++.|+||||+|||||+|-|+...
T Consensus 28 G~F~FLtG~SGAGKttLLKLl~~~~ 52 (215)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGAL 52 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7407887277861789999998526
No 69
>PRK04040 adenylate kinase; Provisional
Probab=97.91 E-value=0.00011 Score=48.00 Aligned_cols=156 Identities=16% Similarity=0.181 Sum_probs=73.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEECCCCCC-CCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEE
Q ss_conf 971899988999998999999985189-81799861188899-9832355300012354211102763644555048605
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSE-YLVMPVGVTTRRPR-VDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYY 78 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~-~~~~~is~TTR~~R-~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~Y 78 (185)
|.|+++++|-+||||||+.+.+.+... ++.. +.|-|.=-. ..+..++ -+++++.++--.... +
T Consensus 1 ~~k~VvvtGiPGvGKTTv~~~~~~~l~~~~~~-vn~G~~M~e~A~~~glv----~~RDemRkL~~~~q~----~------ 65 (189)
T PRK04040 1 MMKVVVVTGVPGVGKTTVLNKALEKLKEDYKI-VNFGDVMLEVAKEEGLV----EHRDEMRKLPLEEQK----E------ 65 (189)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEHHHHHHHHHHHCCCC----CCHHHHCCCCHHHHH----H------
T ss_conf 94189997589887899999999972358759-86779999999981773----477887479999999----9------
Q ss_pred EEECCCHHHHHHHCC--CCCCCCC-----CCCH------HHHHHCCCCCHHHHHHCCCCHHHHHHHHHH--CCC--CCHH
Q ss_conf 544320023332012--3200243-----1000------133210553101122213328999998863--034--2078
Q gi|254781197|r 79 GYLKEDINNPMEHGY--DILLILT-----HQGL------APLKKLYEDQVTSIFIAPPSEAELIQRRIK--RRE--DTPF 141 (185)
Q Consensus 79 Gt~~~~i~~~~~~g~--~~il~id-----~~G~------~~lk~~~~~~~~~IfI~pps~~~L~~RL~~--R~~--d~~~ 141 (185)
..+.+-+...+.+. .+++|.+ +.|+ .-|+...|+.. |.|.+...+.+.+|+.. |++ ++.+
T Consensus 66 -lQ~~Aa~~I~~~~~~~~ViIDTHa~Iktp~GylpGLP~~Vl~~L~P~~i--vlieA~P~eIl~RR~~D~tR~RD~es~~ 142 (189)
T PRK04040 66 -LQREAAERIAEMAGEGPVIVDTHATIKTPGGYLPGLPEWVLEELNPDVI--VLIEADPDEILMRRLRDPTRRRDVETEE 142 (189)
T ss_pred -HHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCEE--EEEECCHHHHHHHHHCCCCCCCCCCCHH
T ss_conf -9999999999835787289944520026886778998999986699889--9997588999998842556689878899
Q ss_pred HHHHHHHH-------HHHC---CCEEEECCC--HHHHHHHHHHHH
Q ss_conf 99999998-------7636---988999397--899999999999
Q gi|254781197|r 142 NLDPDLFG-------KNHS---YSFTIVNNH--LPTACRQVGFIR 174 (185)
Q Consensus 142 ~i~~rl~~-------~~~~---fD~~IvNdd--le~a~~~l~~I~ 174 (185)
+|+..... +... -=++|.|.+ ++.|.++|-.++
T Consensus 143 ~I~~hq~~nR~~a~ayavltga~Vkiv~N~e~~~e~Aa~~iv~~l 187 (189)
T PRK04040 143 SIEEHQEMNRAAAMAYAVLTGATVKIVENHEGLLEEAAEEIVEVL 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 999999999999999999739848999789998899999999986
No 70
>pfam03193 DUF258 Protein of unknown function, DUF258.
Probab=97.89 E-value=4.5e-06 Score=56.09 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
+|+.|++|||||||+||+|.|...
T Consensus 35 ~k~sv~~G~SGVGKSTLiN~L~~~ 58 (161)
T pfam03193 35 GKTSVLAGQSGVGKSTLLNALLPE 58 (161)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCH
T ss_conf 985999889998899999885634
No 71
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.89 E-value=5.4e-06 Score=55.62 Aligned_cols=92 Identities=18% Similarity=0.249 Sum_probs=52.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCC---CCEEEEEEEECCC-E
Q ss_conf 71899988999998999999985189817998611888999832355300012354211102---7636445550486-0
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKH---TGLFIETTKVRDE-Y 77 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~---~g~flE~~~~~g~-~ 77 (185)
|..+.|+|||||||+||++.|..-++.-...|. +||+|..=++.+...+.+. ++-++-.+++..| .
T Consensus 355 Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~----------idg~dI~~i~~~~lr~~i~~V~Qd~~LF~~TI~~NI~ 424 (567)
T COG1132 355 GEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEIL----------IDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIA 424 (567)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEE----------ECCEEHHHCCHHHHHHHEEEECCCCHHHHHHHHHHHH
T ss_conf 987888558888578999999861588883698----------9999777538567887823546642777766999974
Q ss_pred EEEE---CCCHHHHHHHCC--CCCCCCCCCCH
Q ss_conf 5544---320023332012--32002431000
Q gi|254781197|r 78 YGYL---KEDINNPMEHGY--DILLILTHQGL 104 (185)
Q Consensus 78 YGt~---~~~i~~~~~~g~--~~il~id~~G~ 104 (185)
||-+ .+++.++++.-. ..+..+ |+|.
T Consensus 425 ~g~~~at~eei~~a~k~a~~~d~I~~l-p~g~ 455 (567)
T COG1132 425 LGRPDATDEEIEEALKLANAHEFIANL-PDGY 455 (567)
T ss_pred CCCCCCCHHHHHHHHHHHCCHHHHHHC-CCCC
T ss_conf 578899999999999994863789847-6667
No 72
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.88 E-value=1.8e-05 Score=52.59 Aligned_cols=51 Identities=14% Similarity=0.094 Sum_probs=33.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 7189998899999899999998518981799861188899983235530001235421110
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK 62 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i 62 (185)
|+.+.|+||||||||||++.|+.-++--...|. .||+|..=++.+.+.+.+
T Consensus 349 Ge~vaiVG~SGsGKSTL~~LL~r~y~p~~G~I~----------idG~di~~~~~~~lR~~i 399 (547)
T PRK10522 349 GELLFLIGGNGSGKSTLAMLLTGLYQPQSGEIL----------LDGKPVTAEQPEDYRKLF 399 (547)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE----------ECCEECCCCCHHHHHHHC
T ss_conf 988999899999779999998289669998698----------999999968999998541
No 73
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.86 E-value=4e-05 Score=50.52 Aligned_cols=146 Identities=10% Similarity=0.085 Sum_probs=71.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEE--
Q ss_conf 189998899999899999998518981799861188899983235530001235421110276364455504860554--
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGY-- 80 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt-- 80 (185)
+=|.++|..|+||||+-+.|.+.. ++.|+ -|.+-.- +..|.. | .+- |-+| |.-|--
T Consensus 134 ~rIaLIGlmGaGKSTvGr~LA~~L-g~pFv--DlD~~IE--k~aG~s---I-~eI---------Fa~~----GE~~FR~~ 191 (304)
T PRK08154 134 PRIALIGLRGAGKSTLGRMLAARL-GVPFV--ELNREIE--REAGLS---V-SEI---------FALY----GQEGYRRL 191 (304)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH-CCCEE--ECHHHHH--HHHCCC---H-HHH---------HHHH----CHHHHHHH
T ss_conf 847988999998889999999995-98977--8779999--992999---9-999---------9986----88999999
Q ss_pred ECCCHHHHHHHCCCCCC------CCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCC--------CCHHHHH--
Q ss_conf 43200233320123200------2431000133210553101122213328999998863034--------2078999--
Q gi|254781197|r 81 LKEDINNPMEHGYDILL------ILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRRE--------DTPFNLD-- 144 (185)
Q Consensus 81 ~~~~i~~~~~~g~~~il------~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~--------d~~~~i~-- 144 (185)
=...+...+.....+|+ .+++.-...|++ +.++||+.+ +.+++.+|+...+. +..+++.
T Consensus 192 E~~~L~~ll~~~~~~VIAtGGGiV~~~~n~~~L~~----~g~vVwL~a-spe~l~~Rv~~~gd~RPLl~~~~a~e~L~~l 266 (304)
T PRK08154 192 ERRALERLIAEHEEMVLATGGGIVSEPATFDLLLS----HCYTVWLKA-SPEEHMARVRAQGDLRPMADNREAMEDLRRI 266 (304)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH----CCEEEEEEC-CHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99999998711699899728721278899999996----898999979-9999999986489999999998889999999
Q ss_pred --HHHHHHHHCCCEEEECC--CHHHHHHHHHHHHHH
Q ss_conf --99998763698899939--789999999999999
Q gi|254781197|r 145 --PDLFGKNHSYSFTIVNN--HLPTACRQVGFIREF 176 (185)
Q Consensus 145 --~rl~~~~~~fD~~IvNd--dle~a~~~l~~I~e~ 176 (185)
.|..-|. .-|++|.-+ .+++++++|..++..
T Consensus 267 l~~R~plY~-~AD~~IdTsg~tvees~~~L~~lv~~ 301 (304)
T PRK08154 267 LASREPLYA-RADAVVDTSGLTVEASLARLRELVRP 301 (304)
T ss_pred HHHHHHHHH-HCCEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 998788998-68989879999999999999999998
No 74
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.85 E-value=5.6e-05 Score=49.68 Aligned_cols=122 Identities=19% Similarity=0.295 Sum_probs=65.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC--CEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEEE
Q ss_conf 899988999998999999985189--817998611888999832355300012354211102763644555048605544
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSE--YLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYL 81 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~--~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt~ 81 (185)
+++|+|..||||||+++.|.+... +...++. .+--.| +.+.+..+..++++ -|..
T Consensus 1 Livl~GlP~SGKSt~a~~L~~~l~~~~~~~i~~-~~d~~~-------~~~~~~~~~~Ek~~---------------r~~~ 57 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELSKKLSEKNIDNIIL-GTDLIR-------ESFPVWKEKYEEFI---------------RDST 57 (249)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEE-CCCCCH-------HHHHHCCHHHHHHH---------------HHHH
T ss_conf 978967899989999999999999829965996-552002-------12000336779998---------------9999
Q ss_pred CCCHHHHHHHCCCCCCCCC--CCCHH----HHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 3200233320123200243--10001----33210553101122213328999998863034207899999998
Q gi|254781197|r 82 KEDINNPMEHGYDILLILT--HQGLA----PLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDTPFNLDPDLFG 149 (185)
Q Consensus 82 ~~~i~~~~~~g~~~il~id--~~G~~----~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~d~~~~i~~rl~~ 149 (185)
+..+...+....++|+|=. ..|.+ .+-+.++...+.||+.+| .+...+|=..|+..-++++-++|..
T Consensus 58 ~~~v~~~l~~~~~vI~D~~nYiKg~RYEL~clAk~~~t~~c~I~~~~p-~e~c~~~N~~R~~~~~~e~i~~m~~ 130 (249)
T TIGR03574 58 LYLIKTALKNKYSVIVDDTNYYNSKRRDLINIAKEYNKNYIIIYLKAP-LDTLLRRNIERGEKIPNEVIKDMYE 130 (249)
T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC-HHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 999999843376699727327889999999999984998699997399-9999998760689999999999999
No 75
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.85 E-value=5.9e-06 Score=55.38 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
+|..+++||||||||||.|.|+..
T Consensus 161 ~k~~v~~G~SGvGKSSLiN~L~~~ 184 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLPD 184 (287)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCH
T ss_conf 988999889988889999874621
No 76
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.84 E-value=2.3e-05 Score=51.99 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=34.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 7189998899999899999998518981799861188899983235530001235421110
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK 62 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i 62 (185)
|+.+.|+||||||||||++.|+.-++--...|. +||.|..-++.+.+.+.+
T Consensus 28 Ge~i~IvG~sGsGKSTLl~ll~gl~~p~~G~I~----------i~g~~i~~~~~~~~r~~i 78 (234)
T cd03251 28 GETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL----------IDGHDVRDYTLASLRRQI 78 (234)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE----------ECCEECCCCCHHHHHHCE
T ss_conf 999999989998299999999667667886899----------999996608999997317
No 77
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter; InterPro: IPR005897 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains ABC-type bacteriocin transporter. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Peptide bacteriocins are exported across the cytoplasmic membrane by a dedicated ATP-binding cassette (ABC) transporter. These ABC-transporters have an N-terminal peptidase domain that belong to MEROPS peptidase family C39 (clan CA); a central multi-pass transmembrane region and a C-terminal ABC transporter domain. These transporters have dual function: (i) they remove the N-terminal leader peptide from its bacteriocin precursor by cleavage at a Gly-Gly bond and (ii) transport the mature bacteriocin across the cytoplasmic membrane. This represents a novel strategy for secretion of bacterial proteins . Many bacteria are known to regulate diverse physiological processes through this system, such as bioluminescence, regulation of sporulation, virulence factor expression, antibiotics production, competence for genetic transformation, and activation of biofilm formation .; GO: 0008234 cysteine-type peptidase activity, 0019534 toxin transporter activity, 0006810 transport, 0016020 membrane.
Probab=97.84 E-value=1.2e-05 Score=53.57 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 97189998899999899999998518
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|+.-+.|+|+||||||||+|.|.+-+
T Consensus 499 ~n~k~tiVGmSGSGKsTLaKLLV~Ff 524 (710)
T TIGR01193 499 KNEKITIVGMSGSGKSTLAKLLVGFF 524 (710)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 78548997367974899998752035
No 78
>PRK06547 hypothetical protein; Provisional
Probab=97.84 E-value=0.00019 Score=46.57 Aligned_cols=122 Identities=16% Similarity=0.115 Sum_probs=60.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCC--CCHHHHHHHCCCCEEEEEEEEC--CCEE
Q ss_conf 18999889999989999999851898179986118889998323553000--1235421110276364455504--8605
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRF--ISQSQFKGWKHTGLFIETTKVR--DEYY 78 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~F--vs~e~F~~~i~~g~flE~~~~~--g~~Y 78 (185)
+||.|=||||||||||+++|.+..+.... -|+--= .+|= +|-+... +. ++.-.-...|+=..|..|. ...+
T Consensus 16 ~iVaIDG~sGaGKTTLA~~La~~~~~~~v--vHmDD~-Y~GW-~gl~~~~~~l~-~~VL~Pl~~G~~~~yr~~DW~~~~~ 90 (184)
T PRK06547 16 ITVLIDGRSGSGKTTLAGELAACWEGSQL--VHLDDL-YPGW-DGLAAASEHVR-EALLDPRALGRPGRWRRWDWANNCP 90 (184)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCE--EEECCC-CCCC-CCCHHHHHHHH-HHHHHHHCCCCCCEEECCCCCCCCC
T ss_conf 99998689988889999999974579828--970577-7776-54046899999-9986464189973660621578997
Q ss_pred EEECCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCC-CHHHHHHCCCCHHHHHHHHHHCCCCC
Q ss_conf 54432002333201232002431000133210553-10112221332899999886303420
Q gi|254781197|r 79 GYLKEDINNPMEHGYDILLILTHQGLAPLKKLYED-QVTSIFIAPPSEAELIQRRIKRREDT 139 (185)
Q Consensus 79 Gt~~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~-~~~~IfI~pps~~~L~~RL~~R~~d~ 139 (185)
|- . ..+..+..+| | +|+-+++..... --..|||..|. ++-++|.+.|..+.
T Consensus 91 ~~---~--~~v~~~~~lI--v--EGvga~~~~~r~~~d~~IWve~~~-~~r~~R~l~RDGe~ 142 (184)
T PRK06547 91 GG---W--VTVEPGRRLI--I--EGVGALTAANRALADLTVWLEGPE-ALRKQRALTRDPDY 142 (184)
T ss_pred CC---C--EECCCCCCEE--E--ECCCCCCHHHCCCCCEEEEEECCH-HHHHHHHHHCCCCH
T ss_conf 87---5--6737888189--9--662315631314123777774898-99999998609502
No 79
>PRK06762 hypothetical protein; Provisional
Probab=97.83 E-value=2.4e-05 Score=51.85 Aligned_cols=28 Identities=39% Similarity=0.527 Sum_probs=26.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 9718999889999989999999851898
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSEY 28 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~~ 28 (185)
|.|+|||=|.|||||||++++|.+.++.
T Consensus 1 mt~LIiiRGNSgSGKtT~Ak~L~~~~G~ 28 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLGR 28 (166)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9528999788888878999999998688
No 80
>PRK13949 shikimate kinase; Provisional
Probab=97.83 E-value=0.0001 Score=48.20 Aligned_cols=29 Identities=34% Similarity=0.536 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 9718999889999989999999851898179
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSEYLVM 31 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~~~~~ 31 (185)
|.+ |+|+|+.||||||+.+.|.+... +.+
T Consensus 1 Mk~-I~LiG~mGsGKstiGk~La~~l~-~~f 29 (169)
T PRK13949 1 MAR-IFLVGYMGAGKTTLGKALARELG-LSF 29 (169)
T ss_pred CCC-EEEECCCCCCHHHHHHHHHHHHC-CCE
T ss_conf 983-89979999988999999999959-997
No 81
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.83 E-value=2.5e-05 Score=51.75 Aligned_cols=50 Identities=16% Similarity=0.174 Sum_probs=33.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 718999889999989999999851898179986118889998323553000123542111
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGW 61 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~ 61 (185)
|..+.|+||||||||||++.|+.-.+--...|. .||+|..-++...+.+.
T Consensus 27 Ge~v~ivG~sGsGKSTLl~ll~gl~~p~~G~I~----------idg~di~~~~~~~~r~~ 76 (236)
T cd03253 27 GKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL----------IDGQDIREVTLDSLRRA 76 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEE----------ECCEECCCCCHHHHHHC
T ss_conf 999999999999899999997438548874899----------99999231899999723
No 82
>TIGR00955 3a01204 Pigment precourser permease; InterPro: IPR005284 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes different parts of a membrane-spanning permease system necessary for the transport of pigment precursor into pigment cells responsible for eye color. White protein dimerises with brown protein for the transport of guanine and with scarlet protein for the transport of tryptophan.; GO: 0006810 transport.
Probab=97.82 E-value=1.5e-05 Score=52.95 Aligned_cols=50 Identities=20% Similarity=0.329 Sum_probs=35.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 71899988999998999999985189-8179986118889998323553000123542111
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE-YLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGW 61 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~-~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~ 61 (185)
|.++.|+|+||||||||++.|....+ ++...-+.-+ +||.- ++.++|.++
T Consensus 58 GeLlA~mGsSGAGKTTLmn~La~R~~~g~~~~g~~v~-------lNG~~---~~~~~~~~~ 108 (671)
T TIGR00955 58 GELLAIMGSSGAGKTTLMNALAFRSPKGLKVSGSVVL-------LNGRP---IDAKEMRAI 108 (671)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCEECCCEEE-------ECCEE---CCHHHHHHH
T ss_conf 7068984787662689999985337478614683678-------75837---586899854
No 83
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL; InterPro: IPR012701 Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three-component ABC transporter, where IPR005769 from INTERPRO is the permease, IPR005770 from INTERPRO is the phosphonates binding protein, and IPR012693 from INTERPRO is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lyase complex. This protein (PhnL) and the adjacent-encoded PhnK (IPR012700 from INTERPRO) resemble transporter ATP-binding proteins but are suggested, based on mutagenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se ..
Probab=97.81 E-value=1.6e-05 Score=52.91 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|-.++|+||||||||||+|.|-.+|
T Consensus 34 GEcv~L~G~SGaGKSTlLk~lYaNY 58 (224)
T TIGR02324 34 GECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 7358853688876789999766304
No 84
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.80 E-value=5.4e-05 Score=49.77 Aligned_cols=134 Identities=17% Similarity=0.241 Sum_probs=66.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC-EEEEEEE---C--CCCCCCCCCCCCCCCCCCHHH--HH------HHCCCCEEEE
Q ss_conf 8999889999989999999851898-1799861---1--888999832355300012354--21------1102763644
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEY-LVMPVGV---T--TRRPRVDEKQYIDYRFISQSQ--FK------GWKHTGLFIE 69 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~-~~~~is~---T--TR~~R~~E~~g~dY~Fvs~e~--F~------~~i~~g~flE 69 (185)
||-|+|-|||||||+++.+.+.+.. ...+++. = .|..|.. .+.. +..++. |+ ...++|+=++
T Consensus 1 IIgVaG~SGSGKTTv~~~i~~ifg~~~v~vI~~D~Yhr~dr~~r~~--~~~t--~~~P~And~dll~~~l~~Lk~Gk~i~ 76 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKE--TGIT--ALDPRANNFDLMYEQLKALKEGQAIE 76 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHH--HCCC--CCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9899788878699999999998584876999657778899899987--1877--68975234999999999998599534
Q ss_pred EEEECCCEEEEECCCHHHHHHHCCCCCCCCCCCCHH-----HHHHCCCCCHHHHHHCCCCHHHHHHHHH----HCCCCCH
Q ss_conf 555048605544320023332012320024310001-----3321055310112221332899999886----3034207
Q gi|254781197|r 70 TTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLA-----PLKKLYEDQVTSIFIAPPSEAELIQRRI----KRREDTP 140 (185)
Q Consensus 70 ~~~~~g~~YGt~~~~i~~~~~~g~~~il~id~~G~~-----~lk~~~~~~~~~IfI~pps~~~L~~RL~----~R~~d~~ 140 (185)
--. +++.-|+. +.-.. +. ...+|+ .+|.. .+++.+. +.||+.|+...++.+|+. +||...+
T Consensus 77 ~Pv-Ydh~tg~~-~~~e~-i~-p~diII---~EGLh~l~~~~lrdl~D---LkIfVD~d~dlr~~rKI~RD~~ERGyS~E 146 (273)
T cd02026 77 KPI-YNHVTGLI-DPPEL-IK-PTKIVV---IEGLHPLYDERVRELLD---FSVYLDISDEVKFAWKIQRDMAERGHSLE 146 (273)
T ss_pred CCC-CCCCCCCC-CCCEE-EC-CCCEEE---EECEECCCCHHHHHHHC---EEEEECCCHHHHHHHHHHHHHHHHCCCHH
T ss_conf 322-21458965-77565-06-874799---92200026688986607---46885687647999987766766488999
Q ss_pred H---HHHHHHHHHH
Q ss_conf 8---9999999876
Q gi|254781197|r 141 F---NLDPDLFGKN 151 (185)
Q Consensus 141 ~---~i~~rl~~~~ 151 (185)
. .|.+|+-.+.
T Consensus 147 ~V~~~I~rR~pDy~ 160 (273)
T cd02026 147 DVLASIEARKPDFE 160 (273)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999986047889
No 85
>KOG3079 consensus
Probab=97.79 E-value=1.1e-05 Score=53.70 Aligned_cols=158 Identities=17% Similarity=0.236 Sum_probs=89.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEE
Q ss_conf 97189998899999899999998518981799861188899983235530001235421110276364455504860554
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGY 80 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt 80 (185)
|..||.+.|+.||||.|++.++.++++..+++.----|.-+..+ |-.|-+ ..++++++|..+-.....
T Consensus 7 ~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~--gse~g~----~I~~~i~~G~iVP~ei~~------ 74 (195)
T KOG3079 7 KPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASA--GSERGA----LIKEIIKNGDLVPVEITL------ 74 (195)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHCCCEEECHHHHHHHHHCCC--CCHHHH----HHHHHHHCCCCCCHHHHH------
T ss_conf 79889997689888226999999976954632879999988054--676789----999999869967489999------
Q ss_pred ECCCHHHHHHHCCC-CCCCCCCCCH----HHH---HHCCC-CCHHHHHHCCCCHHHHHHHHHHCCC------CCHHHHHH
Q ss_conf 43200233320123-2002431000----133---21055-3101122213328999998863034------20789999
Q gi|254781197|r 81 LKEDINNPMEHGYD-ILLILTHQGL----APL---KKLYE-DQVTSIFIAPPSEAELIQRRIKRRE------DTPFNLDP 145 (185)
Q Consensus 81 ~~~~i~~~~~~g~~-~il~id~~G~----~~l---k~~~~-~~~~~IfI~pps~~~L~~RL~~R~~------d~~~~i~~ 145 (185)
+=+.+.+.+-.. --+.|| |. .|+ -+.+. ..-+.+|+..| .+++.+|+..|++ |+.+.+.+
T Consensus 75 --~LL~~am~~~~~~~~fLID--GyPR~~~q~~~fe~~i~~~~~fvl~fdc~-ee~~l~Rll~R~q~~~R~DDn~esikk 149 (195)
T KOG3079 75 --SLLEEAMRSSGDSNGFLID--GYPRNVDQLVEFERKIQGDPDFVLFFDCP-EETMLKRLLHRGQSNSRSDDNEESIKK 149 (195)
T ss_pred --HHHHHHHHHCCCCCEEEEC--CCCCCHHHHHHHHHHHCCCCCEEEEEECC-HHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf --9999999965778838865--89887688999998856787779998688-899999999606657878875577999
Q ss_pred HHHHHHHC-------CC----EEEEC--CCHHHHHHHHHHHHH
Q ss_conf 99987636-------98----89993--978999999999999
Q gi|254781197|r 146 DLFGKNHS-------YS----FTIVN--NHLPTACRQVGFIRE 175 (185)
Q Consensus 146 rl~~~~~~-------fD----~~IvN--ddle~a~~~l~~I~e 175 (185)
|+..+... |+ ..-+| .+.++.+.++..+++
T Consensus 150 R~et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id 192 (195)
T KOG3079 150 RLETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAID 192 (195)
T ss_pred HHHHHHHCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 9999987001899998735968875177987889999998740
No 86
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.78 E-value=3.1e-05 Score=51.17 Aligned_cols=51 Identities=16% Similarity=0.085 Sum_probs=36.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 7189998899999899999998518981799861188899983235530001235421110
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK 62 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i 62 (185)
|+.+.|+||||||||||++.|..-++--...|. .||.|...++.+.+.+.+
T Consensus 28 G~~vaivG~sGsGKSTll~ll~gl~~p~~G~I~----------i~g~di~~~~~~~~r~~i 78 (237)
T cd03252 28 GEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL----------VDGHDLALADPAWLRRQV 78 (237)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE----------ECCEECCCCCHHHHHHHC
T ss_conf 999999999998599999999677657987899----------999995518999998601
No 87
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=1.4e-05 Score=53.24 Aligned_cols=55 Identities=16% Similarity=0.304 Sum_probs=40.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEE---------EEECCCCCCCCCCCCCCCCCCCH
Q ss_conf 97189998899999899999998518981799---------86118889998323553000123
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSEYLVMP---------VGVTTRRPRVDEKQYIDYRFISQ 55 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~---------is~TTR~~R~~E~~g~dY~Fvs~ 55 (185)
+.++++|+||.+||||.|+-.|.++.+.-..+ ..--|=+|-..|..|+-||-++-
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi 65 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDI 65 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHCCCCCCCCCCCCHHHHCCCCEEEECC
T ss_conf 9637999898875778999999998299289302355318886307999999985899787545
No 88
>TIGR01360 aden_kin_iso1 adenylate kinase; InterPro: IPR006267 Members of this family are adenylate kinase, 2.7.4.3 from EC. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (IPR006266 from INTERPRO), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in IPR006259 from INTERPRO.; GO: 0004017 adenylate kinase activity, 0005524 ATP binding, 0046034 ATP metabolic process, 0005737 cytoplasm.
Probab=97.77 E-value=8.6e-05 Score=48.61 Aligned_cols=144 Identities=18% Similarity=0.301 Sum_probs=88.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHH----------HHHHCCCCEEEEEEE
Q ss_conf 1899988999998999999985189817998611888999832355300012354----------211102763644555
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQ----------FKGWKHTGLFIETTK 72 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~----------F~~~i~~g~flE~~~ 72 (185)
+||+|+|=+||||-|=+.++.++|..-+.+- || +=++| ...-.++|.++-...
T Consensus 4 kIiFivGGPGSGKGTQC~KiV~KYGfTHLSs---------Gd--------LLR~Ev~SgS~rg~~L~aiMe~G~LVp~~~ 66 (191)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLSS---------GD--------LLREEVASGSERGKQLQAIMESGELVPLDV 66 (191)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHCCCCCCCH---------HH--------HHHHHHCCCCCHHHHHHHHHHCCCCCCCHH
T ss_conf 5688865888884013689886418864540---------67--------889874157811478999986188555066
Q ss_pred ECCCEEEEECCCHHHHHHH-CCCCCCCCCCCCH-HHHH------HCCCCCHHHHHHCCCCHHHHHHHHHHCC--------
Q ss_conf 0486055443200233320-1232002431000-1332------1055310112221332899999886303--------
Q gi|254781197|r 73 VRDEYYGYLKEDINNPMEH-GYDILLILTHQGL-APLK------KLYEDQVTSIFIAPPSEAELIQRRIKRR-------- 136 (185)
Q Consensus 73 ~~g~~YGt~~~~i~~~~~~-g~~~il~id~~G~-~~lk------~~~~~~~~~IfI~pps~~~L~~RL~~R~-------- 136 (185)
|-.- .++++-..+.. .+=-++ | |+ ++.+ +...+.-..+|+.+ |.|+|-+||++|+
T Consensus 67 VL~L----l~dAm~~~~~~GskGFLI--D--GYPRev~QG~eFe~~I~~a~L~Ly~d~-s~dTmv~RLL~Ra~~S~vkR~ 137 (191)
T TIGR01360 67 VLDL----LKDAMLAALGKGSKGFLI--D--GYPREVKQGEEFEKRIAPAKLVLYFDC-SEDTMVKRLLKRAETSGVKRV 137 (191)
T ss_pred HHHH----HHHHHHHHHCCCCCCCCC--C--CCCCCHHHHHHHHHHCCCCCEEEEEEC-CHHHHHHHHHHHHHHCCCCCC
T ss_conf 8999----999999862489863112--6--873320112456751599634643000-444799999998762479988
Q ss_pred CCCHHHHHHHHHHHHHC-------C----CEEEECC--CHHHHHHHHHH
Q ss_conf 42078999999987636-------9----8899939--78999999999
Q gi|254781197|r 137 EDTPFNLDPDLFGKNHS-------Y----SFTIVNN--HLPTACRQVGF 172 (185)
Q Consensus 137 ~d~~~~i~~rl~~~~~~-------f----D~~IvNd--dle~a~~~l~~ 172 (185)
.|+++-|.+||..+... | -.+=+|- ++|+.+.++-.
T Consensus 138 DDn~~TI~kRL~ty~~~t~pvi~yYe~kg~~~~iNAEG~vddvF~~vv~ 186 (191)
T TIGR01360 138 DDNEKTIKKRLETYYKATEPVIAYYESKGKLLKINAEGTVDDVFLQVVA 186 (191)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH
T ss_conf 9887899999999885028899861788715774277877589999999
No 89
>PRK01889 ribosome-associated GTPase; Reviewed
Probab=97.77 E-value=1.5e-05 Score=53.05 Aligned_cols=24 Identities=29% Similarity=0.595 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
||..+++|+||||||||+|.|+..
T Consensus 194 GkT~vl~G~SGVGKSTLiN~L~g~ 217 (353)
T PRK01889 194 GKTVALLGSSGVGKSTLVNALLGE 217 (353)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCH
T ss_conf 978999778886699999875653
No 90
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.77 E-value=3.1e-05 Score=51.18 Aligned_cols=70 Identities=11% Similarity=0.142 Sum_probs=44.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHC---CCCEEEEEEEECCC-E
Q ss_conf 7189998899999899999998518981799861188899983235530001235421110---27636445550486-0
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK---HTGLFIETTKVRDE-Y 77 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i---~~g~flE~~~~~g~-~ 77 (185)
|+.+.|+||||||||||++.|+.-++--...|. .||+|-.=++.+.+.+.+ .++-|+-.+++..| .
T Consensus 361 Ge~vaiVG~SGsGKSTL~~LL~gly~p~~G~I~----------idg~di~~i~~~~lR~~i~~V~Q~~~LF~gTI~eNI~ 430 (585)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLHRVFDPQSGRIR----------IDGTDIRTVTRASLRRNIGVVFQEAGLFNRSIEDNLR 430 (585)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEE----------ECCEECHHCCHHHHHHHCCEECCCCCCCCHHHHHHHH
T ss_conf 988999889898699999998601578879675----------8989610168999985252216676354765998875
Q ss_pred EEEE
Q ss_conf 5544
Q gi|254781197|r 78 YGYL 81 (185)
Q Consensus 78 YGt~ 81 (185)
||-+
T Consensus 431 ~g~~ 434 (585)
T PRK13657 431 VGRP 434 (585)
T ss_pred CCCC
T ss_conf 2799
No 91
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA; InterPro: IPR011917 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes .; GO: 0005524 ATP binding, 0006869 lipid transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=97.76 E-value=1.4e-05 Score=53.11 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=19.2
Q ss_pred CCEEEEECCCCCCHHHHHHHH
Q ss_conf 718999889999989999999
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQV 22 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L 22 (185)
|+++.|+|+||||||||++-|
T Consensus 388 G~~vALVGRSGSGKsTlv~Ll 408 (603)
T TIGR02203 388 GETVALVGRSGSGKSTLVNLL 408 (603)
T ss_pred CCEEEEECCCCCHHHHHHHHC
T ss_conf 735998706885389998552
No 92
>PRK12338 hypothetical protein; Provisional
Probab=97.75 E-value=7e-05 Score=49.10 Aligned_cols=166 Identities=20% Similarity=0.252 Sum_probs=74.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHH-----------HHHCCCCEEEEEE-
Q ss_conf 8999889999989999999851898179986118889998323553000123542-----------1110276364455-
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQF-----------KGWKHTGLFIETT- 71 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F-----------~~~i~~g~flE~~- 71 (185)
+|.|.|+||+||+||+..|..+. ++..++|.- ..|. +=--|+++++. +.+.....+..-.
T Consensus 6 iILiGGtSGvGKSTlAseLAsRL-gI~tvIsTD--sIRe-----vmR~~is~e~~P~L~~STY~A~~~Lr~~~~~~~~~~ 77 (320)
T PRK12338 6 VILIGSASGIGKSTIASEVARRL-NIKHLIETD--FIRE-----VVRGIIGKEYAPALHMSSYNAYTALRDKDHFVPKRF 77 (320)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC-CCCEEECCH--HHHH-----HHHHHCCHHHCCHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 99970688876888999999851-987110334--7999-----999833804153455420267887267423577411
Q ss_pred ---EECCC-----EEEEECC-CHHHHHHHCCCCCCC---CCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCC
Q ss_conf ---50486-----0554432-002333201232002---43100013321055310112221332899999886303420
Q gi|254781197|r 72 ---KVRDE-----YYGYLKE-DINNPMEHGYDILLI---LTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDT 139 (185)
Q Consensus 72 ---~~~g~-----~YGt~~~-~i~~~~~~g~~~il~---id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~d~ 139 (185)
-..|. .==.+.+ -|..++..|.+++++ +.| |.......+.....+.||...+.+...+|...|+...
T Consensus 78 ~~~vi~Gfe~q~e~V~~~le~vI~r~~~~~~sivIEGVHLvP-gfi~~~~~~~~~~i~F~i~~~~E~kH~eRF~~Rak~m 156 (320)
T PRK12338 78 EELVIAGFEEHASFVIPAIEKVIKRAVTDADDIVIEGVHLVP-GLINIEQFYEYANIHFFILYADEEEHKERFVKRAMEI 156 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECH-HHCCHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHH
T ss_conf 678999999998999999999999998648867998453055-5505766226666369999817689999999999885
Q ss_pred HH------------HHHHHHHHHHHCCCE-EEECCCHHHHHHHH-HHHHHHHH
Q ss_conf 78------------999999987636988-99939789999999-99999998
Q gi|254781197|r 140 PF------------NLDPDLFGKNHSYSF-TIVNNHLPTACRQV-GFIREFVK 178 (185)
Q Consensus 140 ~~------------~i~~rl~~~~~~fD~-~IvNddle~a~~~l-~~I~e~~~ 178 (185)
.. .|+.-+.....++.. +|.|.|++.++.++ .-|.+.++
T Consensus 157 ~r~~Kyvkyf~niR~Iqd~L~~~Adeh~iP~I~N~nid~sV~~i~~~I~~~~~ 209 (320)
T PRK12338 157 KRGGKHLEYFRENRIIHDFLVSQADEHGIPVIKNDDIDRTVSKVLSVIREVSV 209 (320)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHE
T ss_conf 02650899999889999999841676199730476355689999999998734
No 93
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit; InterPro: IPR005892 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits this transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L. lactis functionally complements an Escherichia coli proU mutant. The complementing locus is similar to a opuA locus in Bacillus subtlis. This clarifies the differences in nomenclature.; GO: 0005524 ATP binding, 0015171 amino acid transmembrane transporter activity, 0006865 amino acid transport, 0016020 membrane.
Probab=97.75 E-value=2.1e-05 Score=52.14 Aligned_cols=44 Identities=23% Similarity=0.383 Sum_probs=29.6
Q ss_pred CCEEEEECCCCCCHHHHHHH---HHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 71899988999998999999---9851898179986118889998323553000123542
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQ---VVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQF 58 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~---L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F 58 (185)
|-+|||+|||||||||+++- |++-..+--+ +||.+--=+|+.+.
T Consensus 19 GEi~vi~GlSGsGKsT~vrmlNRLIEPt~G~i~-------------IDG~~I~~~~~~eL 65 (372)
T TIGR01186 19 GEIFVIMGLSGSGKSTLVRMLNRLIEPTAGQIF-------------IDGENIMKISDVEL 65 (372)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEE-------------ECCHHHHCCCHHHH
T ss_conf 438999778998578999998722577787467-------------66214313693475
No 94
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.74 E-value=3.3e-05 Score=51.05 Aligned_cols=69 Identities=13% Similarity=0.118 Sum_probs=43.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH---CCCCEEEEEEEECCC-E
Q ss_conf 718999889999989999999851898179986118889998323553000123542111---027636445550486-0
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGW---KHTGLFIETTKVRDE-Y 77 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~---i~~g~flE~~~~~g~-~ 77 (185)
|..+.|+||||||||||++.|+.-++--...| ..||+|-.=++.++..+. +.++-++-.+++..| .
T Consensus 367 Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I----------~idG~di~~i~~~~lR~~i~~V~Q~~~LF~gTI~eNi~ 436 (593)
T PRK10790 367 RNFVALVGHTGSGKSTLASLLMGYYPLTEGEI----------RLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVT 436 (593)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCC----------CCCCEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf 97899879998868999999998556789941----------65993244246888863157516665145652999977
Q ss_pred EEE
Q ss_conf 554
Q gi|254781197|r 78 YGY 80 (185)
Q Consensus 78 YGt 80 (185)
||.
T Consensus 437 ~g~ 439 (593)
T PRK10790 437 LGR 439 (593)
T ss_pred HHC
T ss_conf 600
No 95
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein; InterPro: IPR012693 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.; GO: 0005524 ATP binding, 0015416 phosphonate transmembrane-transporting ATPase activity, 0015716 phosphonate transport, 0016020 membrane.
Probab=97.74 E-value=2e-05 Score=52.27 Aligned_cols=21 Identities=29% Similarity=0.643 Sum_probs=18.1
Q ss_pred CCEEEEECCCCCCHHHHHHHH
Q ss_conf 718999889999989999999
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQV 22 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L 22 (185)
|=+++|+||||||||||++.|
T Consensus 28 GE~~~~IG~SGAGKSTLLR~i 48 (253)
T TIGR02315 28 GEFVAVIGPSGAGKSTLLRCI 48 (253)
T ss_pred CEEEEEECCCCCCHHHHHHHH
T ss_conf 517999737887267999877
No 96
>pfam00406 ADK Adenylate kinase.
Probab=97.74 E-value=8.8e-06 Score=54.36 Aligned_cols=117 Identities=20% Similarity=0.196 Sum_probs=51.9
Q ss_pred EECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEEECCCHH
Q ss_conf 98899999899999998518981799861188899983235530001235421110276364455504860554432002
Q gi|254781197|r 7 LIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLKEDIN 86 (185)
Q Consensus 7 i~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt~~~~i~ 86 (185)
|+||+||||+|.++.|.+.+.-..+++..-=|. |..... -.-.+..+.+++|.++--..+..- -.+.+.
T Consensus 1 i~G~PGsGKgTqa~~La~~~~~~~is~GdllR~----~~~~~s---~~g~~i~~~i~~G~lvpd~i~~~l----~~~~l~ 69 (186)
T pfam00406 1 LLGPPGAGKGTQAERIVQKYGIVHLSTGDLLRA----EVKSGT---ELGKEAKEYMDKGELVPDEVVVGL----VKERLE 69 (186)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCEEECHHHHHHH----HHHCCC---HHHHHHHHHHHCCCCCCHHHHHHH----HHHHHC
T ss_conf 918898985999999999859906769999999----986288---799999999986995430999999----999970
Q ss_pred HHHHHCCCCCCCCCCCCH---HHHHHCC--CCC-HHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 333201232002431000---1332105--531-0112221332899999886303
Q gi|254781197|r 87 NPMEHGYDILLILTHQGL---APLKKLY--EDQ-VTSIFIAPPSEAELIQRRIKRR 136 (185)
Q Consensus 87 ~~~~~g~~~il~id~~G~---~~lk~~~--~~~-~~~IfI~pps~~~L~~RL~~R~ 136 (185)
+... ..-.|+|==|.-. ..|.+.. ... ..+|++.. +.+++.+||..|.
T Consensus 70 ~~~~-~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~Vi~l~~-~~~~~~~Rl~~R~ 123 (186)
T pfam00406 70 QNDC-KNGFLLDGFPRTVPQAEALEEMLEYGIKLDYVIEFDV-PDEVLVERLTGRR 123 (186)
T ss_pred CCCC-CCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEC-CHHHHHHHHHCCC
T ss_conf 7455-4866873798989999999999974998777999973-7899999997664
No 97
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=97.73 E-value=2.8e-05 Score=51.46 Aligned_cols=47 Identities=21% Similarity=0.221 Sum_probs=33.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 718999889999989999999851898179986118889998323553000123542
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQF 58 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F 58 (185)
|-.+.|+||||||||||++-|..--+.....|. .||-|-.=.++|+|
T Consensus 356 Ge~laIIGPSgSGKStLaR~~vG~W~~~~G~VR----------LDGadl~qWD~e~l 402 (556)
T TIGR01842 356 GEALAIIGPSGSGKSTLARILVGIWPPASGSVR----------LDGADLKQWDRETL 402 (556)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEE----------EEHHHHHCCCHHHC
T ss_conf 745888747865258898788721013565336----------40334402375365
No 98
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.73 E-value=0.00021 Score=46.34 Aligned_cols=73 Identities=11% Similarity=0.040 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHCCCCHHHHHH-HH---HHCCCC--CHHHH----HHHHHHHHH-C-------CCEEEE-CC--CHHHHHH
Q ss_conf 055310112221332899999-88---630342--07899----999998763-6-------988999-39--7899999
Q gi|254781197|r 110 LYEDQVTSIFIAPPSEAELIQ-RR---IKRRED--TPFNL----DPDLFGKNH-S-------YSFTIV-NN--HLPTACR 168 (185)
Q Consensus 110 ~~~~~~~~IfI~pps~~~L~~-RL---~~R~~d--~~~~i----~~rl~~~~~-~-------fD~~Iv-Nd--dle~a~~ 168 (185)
.+|+..+-+|+.+ |.++-.+ |. ..+|.. +-+++ ..|-..+.+ + -|.+++ ++ .+++.++
T Consensus 417 VfPdA~lK~fLtA-s~e~RA~RR~~el~~~g~~~~s~~~i~~~I~~RD~~D~~R~~sPL~~A~DAi~IDTs~lsieeVv~ 495 (512)
T PRK13477 417 VFPDAELKIFLTA-SVEERARRRALDLEAQGFPVIDLEELEAQIAERDRLDSTREIAPLRKADDAIELITDGLSIEEVVD 495 (512)
T ss_pred ECCCCCEEEEEEC-CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHH
T ss_conf 7789996699989-999999999999996688878999999999986143144776888658984899899999999999
Q ss_pred HHHHH-HHHHHHCCCC
Q ss_conf 99999-9999852364
Q gi|254781197|r 169 QVGFI-REFVKQHRII 183 (185)
Q Consensus 169 ~l~~I-~e~~~~~~~~ 183 (185)
+|-.| .+++.++-|.
T Consensus 496 kI~~l~~~ki~~~~~~ 511 (512)
T PRK13477 496 KIIDLYRDRIPEEVWP 511 (512)
T ss_pred HHHHHHHHHCCHHHCC
T ss_conf 9999999753031069
No 99
>pfam02223 Thymidylate_kin Thymidylate kinase.
Probab=97.73 E-value=1.5e-05 Score=53.06 Aligned_cols=36 Identities=31% Similarity=0.277 Sum_probs=25.8
Q ss_pred ECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC
Q ss_conf 8899999899999998518981799861188899983
Q gi|254781197|r 8 IGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDE 44 (185)
Q Consensus 8 ~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E 44 (185)
=|+-||||||.++.|.+....-...+ ++||+|+...
T Consensus 2 EGiDGsGKsTq~~~L~~~L~~~g~~v-~~~~ep~~~~ 37 (186)
T pfam02223 2 EGLDGAGKTTQAELLKERLKEQGIKV-VLTREPGGTP 37 (186)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEE-EEEECCCCCH
T ss_conf 79999899999999999999879908-9974999983
No 100
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.73 E-value=1.6e-05 Score=52.93 Aligned_cols=24 Identities=38% Similarity=0.671 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|++-|++|+||||||||+|+|...
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCH
T ss_conf 884999888877699988741721
No 101
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=97.73 E-value=2.2e-05 Score=52.09 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|-+|.|+|+||||||||+++|-++..
T Consensus 19 g~vlWlTGLSGsGKsTiA~Al~~~L~ 44 (187)
T TIGR00455 19 GVVLWLTGLSGSGKSTIANALEKKLE 44 (187)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 38985116885635799999999999
No 102
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.72 E-value=5.4e-05 Score=49.77 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=32.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 718999889999989999999851898179986118889998323553000123542111
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGW 61 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~ 61 (185)
|+.+.|+||||||||||++.|+.-++--...|. .||+|..=++.+.+.+.
T Consensus 29 G~~iaIvG~sGsGKSTLl~ll~gl~~p~~G~I~----------idg~~i~~~~~~~~r~~ 78 (238)
T cd03249 29 GKTVALVGSSGCGKSTVVSLLERFYDPTSGEIL----------LDGVDIRDLNLRWLRSQ 78 (238)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEE----------ECCEECCCCCHHHHHHC
T ss_conf 999999999999899999998238618851899----------99999231899999740
No 103
>PRK08118 topology modulation protein; Reviewed
Probab=97.71 E-value=3e-05 Score=51.27 Aligned_cols=64 Identities=17% Similarity=0.301 Sum_probs=36.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEE----EEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEE--EEEEEC
Q ss_conf 97189998899999899999998518981799----861188899983235530001235421110276364--455504
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSEYLVMP----VGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFI--ETTKVR 74 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~----is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~fl--E~~~~~ 74 (185)
|.| |.|+|+|||||||++++|.+.. ++... +-+. +| .. -.++++|.++++ .++ +.+-+.
T Consensus 1 M~r-I~IiG~~GsGKSTlAr~L~~~~-~ip~~~LD~l~w~-----~~---w~---~~~~~e~~~~~~--~~~~~~~WIid 65 (167)
T PRK08118 1 MKK-IILIGSGGSGKSTLARQLGEKL-NIPVHHLDALFWK-----PN---WE---GVPKEEQRTVQN--ELVKEDEWIID 65 (167)
T ss_pred CCE-EEEECCCCCCHHHHHHHHHHHH-CCCEEECCCEEEC-----CC---CC---CCCHHHHHHHHH--HHHHCCCEEEE
T ss_conf 967-9998899987999999999988-9697964434766-----89---94---688899999999--99838987994
Q ss_pred CCEEE
Q ss_conf 86055
Q gi|254781197|r 75 DEYYG 79 (185)
Q Consensus 75 g~~YG 79 (185)
|+|..
T Consensus 66 Gny~~ 70 (167)
T PRK08118 66 GNYGG 70 (167)
T ss_pred CCCHH
T ss_conf 77177
No 104
>PRK04195 replication factor C large subunit; Provisional
Probab=97.71 E-value=0.00059 Score=43.73 Aligned_cols=120 Identities=16% Similarity=0.187 Sum_probs=57.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC--EEEEEEECCCCCCCCCCCCCCCCCCCHH-HHHHHC-CCCEEEEEEEECCCE-
Q ss_conf 18999889999989999999851898--1799861188899983235530001235-421110-276364455504860-
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQVVLNSEY--LVMPVGVTTRRPRVDEKQYIDYRFISQS-QFKGWK-HTGLFIETTKVRDEY- 77 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L~~~~~~--~~~~is~TTR~~R~~E~~g~dY~Fvs~e-~F~~~i-~~g~flE~~~~~g~~- 77 (185)
|.++|+||+|+||||++..|+++... +..-.|- .|.. +-+. .++... ....+. ...+++=-.+++|-.
T Consensus 41 k~lLL~GPpGvGKTT~a~~lAk~~g~~viElNASD-~R~~-----~~I~-~~i~~~~~~~sl~~~~~KlIIlDEvD~l~~ 113 (403)
T PRK04195 41 KALLLYGPPGVGKTSLAHALANDYGWEVIELNASD-QRTK-----DVIE-RVAGEASTSGSLFGAKRKLILLDEVDGIHG 113 (403)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCC-CCCH-----HHHH-HHHHHHHHCCCCCCCCCEEEEEECCCCCCC
T ss_conf 46998893998799999999998499859977101-1478-----9999-999987606887788734999634344572
Q ss_pred ---EEEECCCHHHHHHHCCCCC-CCC-CCCCH--HHHHHCCCCCHHHHHHCCCCHHHHHHHHHH
Q ss_conf ---5544320023332012320-024-31000--133210553101122213328999998863
Q gi|254781197|r 78 ---YGYLKEDINNPMEHGYDIL-LIL-THQGL--APLKKLYEDQVTSIFIAPPSEAELIQRRIK 134 (185)
Q Consensus 78 ---YGt~~~~i~~~~~~g~~~i-l~i-d~~G~--~~lk~~~~~~~~~IfI~pps~~~L~~RL~~ 134 (185)
+| ...++.+.+++.+.++ +.+ |+... +.|++ .+..|-+.||+.+.+.+||..
T Consensus 114 ~~d~g-g~~al~~~ik~s~~PiIli~Nd~~~~~~~~lrs----~c~~i~F~~~~~~~I~~~L~~ 172 (403)
T PRK04195 114 NADRG-GVRAILEIIKKAKNPIILTANDPYDPSLRPLRN----ACLMIEFKRLSKRSIVPVLKR 172 (403)
T ss_pred HHHHH-HHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHH----HHHHCCCCCCCHHHHHHHHHH
T ss_conf 44479-999999998548870899826845567177997----661221799499999999999
No 105
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.70 E-value=4e-05 Score=50.51 Aligned_cols=78 Identities=12% Similarity=0.191 Sum_probs=43.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHH---HCCCCEEEEEEEECCCE-
Q ss_conf 71899988999998999999985189817998611888999832355300012354211---10276364455504860-
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKG---WKHTGLFIETTKVRDEY- 77 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~---~i~~g~flE~~~~~g~~- 77 (185)
|+.+.|+||||||||||++.|+..++--...|. .||+|-.=++.+.+.+ .+.++-++-.+++..|.
T Consensus 341 Ge~vaIVG~SGsGKSTLl~LL~g~y~p~~G~I~----------idg~di~~i~~~~lR~~I~~V~Q~~~LF~~TI~eNI~ 410 (569)
T PRK10789 341 GQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIR----------FHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIA 410 (569)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEE----------EECEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf 978998799999879999999977642678746----------5010134257688863147658875025662999986
Q ss_pred EEEE---CCCHHHHH
Q ss_conf 5544---32002333
Q gi|254781197|r 78 YGYL---KEDINNPM 89 (185)
Q Consensus 78 YGt~---~~~i~~~~ 89 (185)
||-+ .+++.+++
T Consensus 411 lg~~~~~~eei~~a~ 425 (569)
T PRK10789 411 LGRPDATQQEIEHVA 425 (569)
T ss_pred CCCCCCCHHHHHHHH
T ss_conf 579776545899999
No 106
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.70 E-value=6.1e-05 Score=49.46 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=22.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 8999889999989999999851898179
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLVM 31 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~~ 31 (185)
+|.|.|||||||+|+++.|.+... +.+
T Consensus 1 iIaIdGpagsGKsT~ak~lA~~l~-~~~ 27 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG-LPY 27 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC-CEE
T ss_conf 988868997898999999999909-907
No 107
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.69 E-value=0.0002 Score=46.43 Aligned_cols=151 Identities=14% Similarity=0.192 Sum_probs=67.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC--CCCC--CHHHHHHHCCCCEEEEEEEECCCE
Q ss_conf 718999889999989999999851898179986118889998323553--0001--235421110276364455504860
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYID--YRFI--SQSQFKGWKHTGLFIETTKVRDEY 77 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~d--Y~Fv--s~e~F~~~i~~g~flE~~~~~g~~ 77 (185)
.|=|+|+|+.||||||+.+.|.+.. ++.+. -|-+-. -+..|.. =.|- .++.|.++ |...... .
T Consensus 4 kknI~LiG~mGsGKstvgk~LA~~l-~~~fi--D~D~~I--e~~~g~si~~If~~~Ge~~FR~~-------E~~~l~~-l 70 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL-NMEFY--DSDQEI--EKRTGADIGWVFDVEGEEGFRDR-------EEKVINE-L 70 (172)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH-CCCEE--ECHHHH--HHHHCCCHHHHHHHHHHHHHHHH-------HHHHHHH-H
T ss_conf 8828988999998899999999996-99968--780999--99979899999999749999999-------9999998-8
Q ss_pred EEEECCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHH---CC----CCCHHHH----HHH
Q ss_conf 554432002333201232002431000133210553101122213328999998863---03----4207899----999
Q gi|254781197|r 78 YGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIK---RR----EDTPFNL----DPD 146 (185)
Q Consensus 78 YGt~~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~---R~----~d~~~~i----~~r 146 (185)
.... ..+++.|.-+++. .+....|+ ....+|||.+ +.+.+.+|+.. |. .+..+.+ +.|
T Consensus 71 --~~~~--~~VIstGGG~v~~--~~~~~~L~----~~g~vv~L~~-~~~~~~~R~~~~~~RPll~~~~~~~~~~~l~~~R 139 (172)
T PRK05057 71 --TEKQ--GIVLATGGGSVKS--RETRNRLS----ARGVVVYLET-TIEKQLARTQRDKKRPLLQVDDPREVLEALANER 139 (172)
T ss_pred --HCCC--CEEEECCCCCCCC--HHHHHHHH----HCCEEEEEEC-CHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf --5479--9799789853588--99999999----6695899959-9899999805899999798998799999999999
Q ss_pred HHHHHHCCCEEEECC--CHHHHHHHHHHHHHHHHH
Q ss_conf 998763698899939--789999999999999985
Q gi|254781197|r 147 LFGKNHSYSFTIVNN--HLPTACRQVGFIREFVKQ 179 (185)
Q Consensus 147 l~~~~~~fD~~IvNd--dle~a~~~l~~I~e~~~~ 179 (185)
..-+....|++|..| +.++.+++ |++.+++
T Consensus 140 ~~~Y~~~Ad~~I~td~~~~~~i~~~---Ii~~L~~ 171 (172)
T PRK05057 140 NPLYEEIADVTVRTDDQSAKVVANQ---IIHMLES 171 (172)
T ss_pred HHHHHHHCCEEEECCCCCHHHHHHH---HHHHHHC
T ss_conf 9999986999998999999999999---9999960
No 108
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.68 E-value=9.3e-05 Score=48.39 Aligned_cols=50 Identities=16% Similarity=0.138 Sum_probs=30.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 718999889999989999999851898179986118889998323553000123542111
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGW 61 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~ 61 (185)
|.++.|+||||||||||.+-+..-..--...|. .+|++..-.+..+...+
T Consensus 27 Ge~v~i~GpSGsGKSTLl~~i~gl~~p~sG~i~----------i~g~~~~~~~~~~~~~~ 76 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR----------VNGQDVSDLRGRAIPYL 76 (214)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEE----------ECCEECCCCCHHHHHHH
T ss_conf 989999979995399999999629898864999----------99999898997789998
No 109
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=97.68 E-value=3.2e-05 Score=51.12 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=19.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
++|-.|+||||+||||+.+.|-.
T Consensus 27 n~vTAlIGPSGCGKSTlLR~lNR 49 (248)
T TIGR00972 27 NQVTALIGPSGCGKSTLLRSLNR 49 (248)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 70589877889867899999887
No 110
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=97.66 E-value=5.7e-05 Score=49.64 Aligned_cols=47 Identities=15% Similarity=0.286 Sum_probs=33.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH--CCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 718999889999989999999851--89817998611888999832355300012354211
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN--SEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKG 60 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~--~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~ 60 (185)
|..|=|+||||||||||.| |+++ .|+-..+. +||+|==-+++..-.+
T Consensus 491 Ge~IGIvGpSGSGKSTLTK-L~QRLYtP~~GqVL-----------VDG~DLA~~DP~wLRR 539 (703)
T TIGR01846 491 GEVIGIVGPSGSGKSTLTK-LLQRLYTPEHGQVL-----------VDGVDLAIADPAWLRR 539 (703)
T ss_pred CEEEEEECCCCCCHHHHHH-HHHHHCCCCCCEEE-----------ECCCCCCCCCCCHHHH
T ss_conf 6579987278986789999-98861488887477-----------7030001018520102
No 111
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=97.66 E-value=3.3e-05 Score=51.00 Aligned_cols=53 Identities=21% Similarity=0.230 Sum_probs=32.9
Q ss_pred CCEEEEECCCCCCHHHHHHH---HHH-HCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEE
Q ss_conf 71899988999998999999---985-18981799861188899983235530001235421110276364
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQ---VVL-NSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFI 68 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~---L~~-~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~fl 68 (185)
|=|++++||||||||||.-. |.. +...+.+- |.+=+=.++.+..+....-.|+
T Consensus 31 GEiViltGPSGSGKTTLLtLiG~LR~~Q~G~L~vl--------------g~~L~ga~~~~l~~~RR~iGyI 87 (220)
T TIGR02982 31 GEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVL--------------GQELKGASKKELVQVRRNIGYI 87 (220)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEE--------------CCHHCCCCHHHHHHHHHHCCCE
T ss_conf 64798437889846889998876256555604782--------------2010267888999998763914
No 112
>TIGR00235 udk uridine kinase; InterPro: IPR000764 Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP A cDNA for uridine kinase from mouse brain was found which encodes a protein of 277 amino acids. A truncated form of the cDNA was expressed in Escherichia coli, and shown to display uridine kinase activity and to readily form a tetramer, the most active form of the wild-type enzyme. Sequence analysis has identified three ATP-binding site consensus motifs. The predicted secondary structure, and sequence comparison with kinases of known structure, is consistent with uridine kinase having the alpha/beta core nucleotide-binding fold common to many kinases .; GO: 0005524 ATP binding, 0016773 phosphotransferase activity alcohol group as acceptor.
Probab=97.66 E-value=0.00042 Score=44.58 Aligned_cols=162 Identities=19% Similarity=0.200 Sum_probs=82.1
Q ss_pred EEEEECCCCCCH----HHHHHHHHHHCCC--EEEE-EE----ECCCCCCCCCC-CCCCCCCCCHHHHHHH--------CC
Q ss_conf 899988999998----9999999851898--1799-86----11888999832-3553000123542111--------02
Q gi|254781197|r 4 IFVLIGASGVGE----TTIAKQVVLNSEY--LVMP-VG----VTTRRPRVDEK-QYIDYRFISQSQFKGW--------KH 63 (185)
Q Consensus 4 iivi~GpSGsGK----~tl~~~L~~~~~~--~~~~-is----~TTR~~R~~E~-~g~dY~Fvs~e~F~~~--------i~ 63 (185)
||-|+|.||||| ||+++.+.+..+. ..++ |+ |-.-.|..-+. +-..+-|=-++.|+.. .+
T Consensus 12 iigI~GgSgSGKs~iATtV~~~i~~~~~~kv~~~~~I~~D~YYK~~GP~~~~~~~r~~~NfDHP~AfD~~Ll~~Hl~nLk 91 (220)
T TIGR00235 12 IIGISGGSGSGKSLIATTVARKIYEQLGKKVLEIVLISQDNYYKDQGPSDLEMAERKKTNFDHPDAFDNDLLYEHLKNLK 91 (220)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCHHCCHHHHHHHHHHHH
T ss_conf 99701766101567899999999998314001457750324458898873124643125889800303799999999984
Q ss_pred CCEEEEEEEECCC-EEEEECCCHHHHHHHCCCCCCCCCCCCHHH-----HHHCCCCCHHHHHHCCCCHHHHHHHHH----
Q ss_conf 7636445550486-055443200233320123200243100013-----321055310112221332899999886----
Q gi|254781197|r 64 TGLFIETTKVRDE-YYGYLKEDINNPMEHGYDILLILTHQGLAP-----LKKLYEDQVTSIFIAPPSEAELIQRRI---- 133 (185)
Q Consensus 64 ~g~flE~~~~~g~-~YGt~~~~i~~~~~~g~~~il~id~~G~~~-----lk~~~~~~~~~IfI~pps~~~L~~RL~---- 133 (185)
+|.-++-= ++.+ .|- +-.-+.+.=.++.|++ ++|... |++... +.|||.+|....|.+||.
T Consensus 92 ~g~~~~~P-~Ydyv~Ht--Rv~~eT~~~~P~~VvI---lEGi~~l~D~Rl~~L~d---lkifvDt~~D~rliRRl~RD~~ 162 (220)
T TIGR00235 92 NGSAIDVP-VYDYVNHT--RVKKETVHVEPKDVVI---LEGILLLTDERLRDLMD---LKIFVDTPLDIRLIRRLERDIE 162 (220)
T ss_pred CCCEECCC-CCCCCCEE--CCCCCCEEECCEEEEE---EECCHHHHHHHHHHHHC---CEEEEECCCHHHHHHHHHHHHH
T ss_conf 68802245-42541002--0255626873506899---70618888799988718---2367746830325656565575
Q ss_pred HCCCCCHHHHHHHHHHH-----------HHCCCEEEEC-CCHHHHHHHHHHHH
Q ss_conf 30342078999999987-----------6369889993-97899999999999
Q gi|254781197|r 134 KRREDTPFNLDPDLFGK-----------NHSYSFTIVN-NHLPTACRQVGFIR 174 (185)
Q Consensus 134 ~R~~d~~~~i~~rl~~~-----------~~~fD~~IvN-ddle~a~~~l~~I~ 174 (185)
+||++-+..|++-...- ..+-|.+|-. .+=+.|++-|..-+
T Consensus 163 ~RGR~~dSvI~Qy~~~V~Pm~~~FvEP~K~~AD~IiP~g~~n~~A~~~l~~~I 215 (220)
T TIGR00235 163 ERGRSLDSVIDQYRKTVRPMYLQFVEPTKQYADLIIPEGGKNEVAINVLKTKI 215 (220)
T ss_pred HCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHH
T ss_conf 42897889999999853462101455010146676258988168899999999
No 113
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein; InterPro: IPR005968 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Thiamine pyrophosphate (TPP) is a required cofactor synthesized de novo in Salmonella typhimurium. The primary role for TPP is in central metabolism as an electron carrier and nucleophile for such enzymes as pyruvate dehydrogenase (1.2.4.1 from EC), acetolactate synthase (4.1.3.18 from EC), and alpha-ketoglutarate dehydrogenase (1.2.4.2 from EC). Despite its importance in cellular physiology, neither the de novo biosynthetic pathway nor the salvage systems for thiamine are fully understood in any organism. The model describes thiamine ABC transporter, ATP-binding protein, believed to be involved in the specific translocation of thiamine and its phosphoesters across the inner membrane The protein belongs to the larger ABC transport system which consists of at least three components: the inner membrane permease; thiamine binding protein and an ATP-binding subunit. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. It has been experimentally demonstrated that mutants in the various steps in the de novo synthesis of thiamine and its biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate or thiamine pyrophosphate. ; GO: 0005524 ATP binding, 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=97.65 E-value=6e-05 Score=49.50 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=28.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH-CC--C-EEEE-EEECCCCCCC
Q ss_conf 718999889999989999999851-89--8-1799-8611888999
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN-SE--Y-LVMP-VGVTTRRPRV 42 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~-~~--~-~~~~-is~TTR~~R~ 42 (185)
|-.+.|+||||+||+||.+.+..- .| + +..- .+|||-||..
T Consensus 24 Ge~VAi~GpSGAGKSTLLnLiAGF~~PasG~i~~nd~~~t~~aPy~ 69 (213)
T TIGR01277 24 GERVAILGPSGAGKSTLLNLIAGFLEPASGEIKVNDKDHTRLAPYR 69 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC
T ss_conf 7768887589862788987786404776405887780122688877
No 114
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.65 E-value=5.6e-05 Score=49.69 Aligned_cols=37 Identities=32% Similarity=0.400 Sum_probs=25.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf 89998899999899999998518981799861188899
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPR 41 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R 41 (185)
+|+|-|+-||||||+++.|.+....-...+ .+||.|-
T Consensus 2 ~IviEG~dGsGKsT~~~~L~~~L~~~g~~v-~~~~eP~ 38 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEV-VLTREPG 38 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCE-EEEECCC
T ss_conf 899989989999999999999999779938-9986999
No 115
>PRK13948 shikimate kinase; Provisional
Probab=97.64 E-value=0.00012 Score=47.84 Aligned_cols=151 Identities=13% Similarity=0.089 Sum_probs=67.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC--CCC--CCHHHHHHHCCCCEEEEEEEECCCEE
Q ss_conf 18999889999989999999851898179986118889998323553--000--12354211102763644555048605
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYID--YRF--ISQSQFKGWKHTGLFIETTKVRDEYY 78 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~d--Y~F--vs~e~F~~~i~~g~flE~~~~~g~~Y 78 (185)
+.|+|+|+.||||||+.+.|.+... +.|. -|-.-.- +..|.. -.| -.++.|.++ |......-
T Consensus 11 ~~IvLIG~mGsGKStiGk~LA~~l~-~~fi--D~D~~Ie--~~~g~sI~eIF~~~GE~~FR~~-------E~~~l~~l-- 76 (182)
T PRK13948 11 TFVALAGFMGTGKSRIGWELSRALA-LHFV--DTDKLIT--RVVGKSIPEVFAQEGEEYFRAC-------EKEVVRRV-- 76 (182)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHC-CCEE--ECHHHHH--HHHCCCHHHHHHHHCHHHHHHH-------HHHHHHHH--
T ss_conf 8189889999988999999999969-5988--8849999--9889399999998489999999-------99999999--
Q ss_pred EEECCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCC------CCCHHH----HHHHHH
Q ss_conf 5443200233320123200243100013321055310112221332899999886303------420789----999999
Q gi|254781197|r 79 GYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRR------EDTPFN----LDPDLF 148 (185)
Q Consensus 79 Gt~~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~------~d~~~~----i~~rl~ 148 (185)
.... ..+++.|.-+++. .+....|++ . ..+||+.. +.+++.+|+.... .+..+. .+.|..
T Consensus 77 -~~~~--~~VIStGGG~v~~--~~n~~~l~~-~---g~vv~L~~-~~~~i~~R~~~~~RPll~~~~~~~~l~~l~~eR~~ 146 (182)
T PRK13948 77 -TRLD--YAVISLGGGTFIH--EENRRALLG-R---GPVVVLWA-SPETVYQRTKHSDRPLLQVEDPLERIRTLMEEREP 146 (182)
T ss_pred -HCCC--CEEEECCCCEECC--HHHHHHHHH-C---CEEEEEEC-CHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf -7479--9699758850058--999999996-8---98999969-99999988178999988899879999999999999
Q ss_pred HHHHCCCEEEECCC--HHHHHHHH-HHHHHHHH
Q ss_conf 87636988999397--89999999-99999998
Q gi|254781197|r 149 GKNHSYSFTIVNNH--LPTACRQV-GFIREFVK 178 (185)
Q Consensus 149 ~~~~~fD~~IvNdd--le~a~~~l-~~I~e~~~ 178 (185)
-+.. .|++|.+|+ .++++++| +.+....+
T Consensus 147 ~Y~~-A~~~I~td~~~~~eiv~~Ii~~L~a~~~ 178 (182)
T PRK13948 147 VYRQ-GTIHVHSDGRPVEEIVEEVVERLWAWAE 178 (182)
T ss_pred HHHH-CCEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9996-7889889989999999999999999986
No 116
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.64 E-value=5.5e-05 Score=49.72 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=40.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH---CCCCEEEEEEEECCCE-
Q ss_conf 718999889999989999999851898179986118889998323553000123542111---0276364455504860-
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGW---KHTGLFIETTKVRDEY- 77 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~---i~~g~flE~~~~~g~~- 77 (185)
|+.+.|+||||||||||++.|+.-++--...|. .||+|-.=++.+.+.+. +.++-|+-.+++..|.
T Consensus 368 G~~vaiVG~SGsGKSTL~~LL~gly~p~~G~I~----------idg~di~~~~~~~lr~~i~~V~Q~~~lF~~TI~eNi~ 437 (581)
T PRK11176 368 GKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL----------LDGHDLRDYTLASLRNQVALVSQNVHLFNDTVANNIA 437 (581)
T ss_pred CCEEECCCCCCCCHHHHHHHHHHHCCCCCCEEE----------ECCEEHHHCCHHHHHCCCCCCCCCCEEECCCHHHHHH
T ss_conf 944312289998678999999853667887487----------8988512147666503455607776110772999972
Q ss_pred EE
Q ss_conf 55
Q gi|254781197|r 78 YG 79 (185)
Q Consensus 78 YG 79 (185)
||
T Consensus 438 ~~ 439 (581)
T PRK11176 438 YA 439 (581)
T ss_pred CC
T ss_conf 26
No 117
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.64 E-value=0.00012 Score=47.65 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+||||||||||.+.|..-
T Consensus 27 Ge~~~iiGpsGsGKSTLl~~i~gl 50 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999983399999999749
No 118
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein; InterPro: IPR013505 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=97.62 E-value=4.4e-05 Score=50.29 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|-++.|+|||||||||++|.++..
T Consensus 29 Gem~fL~GHSGaGKST~lkLi~~~ 52 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTLLKLILGI 52 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 507998568886078999999852
No 119
>TIGR00041 DTMP_kinase thymidylate kinase; InterPro: IPR000062 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process, 0006235 dTTP biosynthetic process.
Probab=97.62 E-value=7.8e-06 Score=54.68 Aligned_cols=137 Identities=16% Similarity=0.101 Sum_probs=79.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC--CCCC-CCHHHHHHHCCC-CEEEEEEEECCC
Q ss_conf 971899988999998999999985189817998611888999832355--3000-123542111027-636445550486
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYI--DYRF-ISQSQFKGWKHT-GLFIETTKVRDE 76 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~--dY~F-vs~e~F~~~i~~-g~flE~~~~~g~ 76 (185)
||..|||=|+-||||||+.+.|.+..+.|..---+-||+|..+-+-.. .+-- +..+.-..+.++ -.+|-.+-=+.|
T Consensus 1 m~~fiviEGiDGaGKTT~~~~l~~~l~~l~g~~~~~t~EPg~t~~ge~IR~~l~D~l~~~~~~~~~~~~alLFaAdR~~H 80 (211)
T TIGR00041 1 MGMFIVIEGIDGAGKTTQLNLLKKLLKELEGYKVLFTREPGGTPIGEKIRELLQDLLNENEEPLTDKTEALLFAADRHDH 80 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 97458885115875899999999997751383478871899987899999999987414666335999999999858999
Q ss_pred EEEEECCCHHHHHHHCCCCCCC---------------CCCCCHHHHHHCCCC--CH-HHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 0554432002333201232002---------------431000133210553--10-11222133289999988630342
Q gi|254781197|r 77 YYGYLKEDINNPMEHGYDILLI---------------LTHQGLAPLKKLYED--QV-TSIFIAPPSEAELIQRRIKRRED 138 (185)
Q Consensus 77 ~YGt~~~~i~~~~~~g~~~il~---------------id~~G~~~lk~~~~~--~~-~~IfI~pps~~~L~~RL~~R~~d 138 (185)
.|=+ .+-|...+.+|+.||.| +|++=+..|....+- .| .+||+.. +.++-.+|+..||.+
T Consensus 81 L~~~-~~~ik~al~~~~~Vi~DRy~~Ss~AYQg~~~~~d~~~~~~lN~~~~~~~~Pd~t~~Ld~-d~e~al~R~~~~g~~ 158 (211)
T TIGR00041 81 LEHV-EEKIKPALAQGKLVISDRYLFSSIAYQGLARGIDIDLVLELNEDALGDMKPDLTILLDI-DPEVALERLRKRGED 158 (211)
T ss_pred HHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEEE-CHHHHHHHHHCCCCH
T ss_conf 9978-98778898669679984112435777542256888899999775211358666898860-737798875204723
Q ss_pred C
Q ss_conf 0
Q gi|254781197|r 139 T 139 (185)
Q Consensus 139 ~ 139 (185)
+
T Consensus 159 ~ 159 (211)
T TIGR00041 159 E 159 (211)
T ss_pred H
T ss_conf 4
No 120
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.61 E-value=5e-05 Score=49.95 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=19.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 7189998899999899999998
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVV 23 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~ 23 (185)
|.++.|+||||||||||.+-+-
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig 52 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLG 52 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 9899998999998999999996
No 121
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.61 E-value=5e-05 Score=49.97 Aligned_cols=22 Identities=32% Similarity=0.641 Sum_probs=19.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 7189998899999899999998
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVV 23 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~ 23 (185)
|.+++|+|||||||||+.+-|.
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 9789998999998889999997
No 122
>KOG1384 consensus
Probab=97.60 E-value=3.6e-05 Score=50.82 Aligned_cols=124 Identities=14% Similarity=0.195 Sum_probs=78.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC-E--------EEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEE
Q ss_conf 718999889999989999999851898-1--------7998611888999832355300012354211102763644555
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEY-L--------VMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTK 72 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~-~--------~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~ 72 (185)
-|++||+||.||||+.|+=.|..+++. + .-...-+|.++-..|.-|+-+|-+..-.++...-.
T Consensus 7 ~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~-------- 78 (348)
T KOG1384 7 DKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTA-------- 78 (348)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCEEEECCCCCCCCCCCHHHCCCCCHHHHCCCCHHHHCCH--------
T ss_conf 359999557777704667888975786465156335632766201668755407987677076886764269--------
Q ss_pred ECCCEEEEECCCHHHHHHHCCCCCCCCCCCCH-HHHHHC-------------------CCCCHHHHHHCCCCHHHHHHHH
Q ss_conf 04860554432002333201232002431000-133210-------------------5531011222133289999988
Q gi|254781197|r 73 VRDEYYGYLKEDINNPMEHGYDILLILTHQGL-APLKKL-------------------YEDQVTSIFIAPPSEAELIQRR 132 (185)
Q Consensus 73 ~~g~~YGt~~~~i~~~~~~g~~~il~id~~G~-~~lk~~-------------------~~~~~~~IfI~pps~~~L~~RL 132 (185)
+.++-....+|++....|+.+|+.---+-. ..|-.. .+.+++.+|+.+ +..+|-+||
T Consensus 79 --~~F~~~a~~aie~I~~rgk~PIv~GGs~~yi~al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda-~~~VL~~~l 155 (348)
T KOG1384 79 --GEFEDDASRAIEEIHSRGKLPIVVGGSNSYLQALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDA-DQAVLFERL 155 (348)
T ss_pred --HHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC-CHHHHHHHH
T ss_conf --99999999999999857997779678406689996068774558543567888755666507999726-667778889
Q ss_pred HHCC
Q ss_conf 6303
Q gi|254781197|r 133 IKRR 136 (185)
Q Consensus 133 ~~R~ 136 (185)
-+|-
T Consensus 156 ~~RV 159 (348)
T KOG1384 156 DKRV 159 (348)
T ss_pred HHHH
T ss_conf 8889
No 123
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=97.60 E-value=0.0014 Score=41.57 Aligned_cols=25 Identities=24% Similarity=0.419 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 8999889999989999999851898
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEY 28 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~ 28 (185)
||.|=|||||||+|+++.|.++...
T Consensus 444 IIaIDGpagsGKsT~ak~lA~~l~~ 468 (662)
T PRK11860 444 VICIDGPTASGKGTLAAAVAQALGY 468 (662)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 8996578756868999999999599
No 124
>TIGR02857 CydD ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; InterPro: IPR014216 The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain and a C-terminal ATP-binding domain. In Escherichia coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in the export of redox-active thiol compounds such as cysteine and glutathione , . The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this entry are all either found in the gammaproteobacterial context, or the CydABCD context. All members of this entry scoring above the trusted cut off at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature, based on this operon in Bacillus subtilis, assigns cydC to the third gene in the operon, where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologues in this family in accordance with the precedence of publication of the E. coli name, CydD..
Probab=97.60 E-value=4.8e-05 Score=50.09 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=34.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC-CCEEEEEEECCCCCCCCCCCCCCCCCCCHH-HHHHH
Q ss_conf 7189998899999899999998518-981799861188899983235530001235-42111
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS-EYLVMPVGVTTRRPRVDEKQYIDYRFISQS-QFKGW 61 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~-~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e-~F~~~ 61 (185)
|+++.|+||||+|||||.+-|+.-- |. ...|. =.|+|=.||++=-=.+++ ...+.
T Consensus 378 G~~vAl~G~SGaGKSTLL~lLLGf~~P~-~G~i~----v~~~Gg~~G~~L~~~~~~W~W~~~ 434 (570)
T TIGR02857 378 GERVALVGPSGAGKSTLLNLLLGFVEPT-EGAIV----VERDGGINGVPLAEADADWSWRDQ 434 (570)
T ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCC-CCEEE----EECCCCCCCCCCCCCCHHHHHHHC
T ss_conf 7048886279997889999997157644-64688----744888539764211310225541
No 125
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.59 E-value=0.00011 Score=47.89 Aligned_cols=64 Identities=19% Similarity=0.228 Sum_probs=38.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 718999889999989999999851898179986118889998323553000123542111027636445550486
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDE 76 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~ 76 (185)
|-++.|+||||+|||||.+-+..-..-....|..-.+|. .+-....-|.|=. ...+-|-++.+|
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v-~~p~~~~~~vFQ~----------~~LlPW~Tv~~N 92 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV-TGPGPDIGYVFQE----------DALLPWLTVLDN 92 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC-CCCCCCEEEEECC----------CCCCCHHHHHHH
T ss_conf 979999899978899999999687877775599888215-7899877999266----------764514668844
No 126
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.59 E-value=0.00011 Score=48.08 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+||||||||||.+-|+.-
T Consensus 33 Ge~~~i~G~sGsGKSTLlk~i~gl 56 (225)
T PRK10247 33 GEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 969999999999999999999646
No 127
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.59 E-value=8.9e-05 Score=48.52 Aligned_cols=47 Identities=15% Similarity=0.204 Sum_probs=30.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC--CCCCCCCCCCHHHHHH
Q ss_conf 7189998899999899999998518981799861188899983--2355300012354211
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDE--KQYIDYRFISQSQFKG 60 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E--~~g~dY~Fvs~e~F~~ 60 (185)
|+.+.|+||||||||||++.|+.-++ |..|+ .||++-.=++.+.+.+
T Consensus 40 Ge~vaIvG~sGsGKSTL~~ll~gl~~------------p~~G~I~idg~~i~~~~~~~lr~ 88 (226)
T cd03248 40 GEVTALVGPSGSGKSTVVALLENFYQ------------PQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC------------CCCCEEEECCEEHHHCCHHHHHH
T ss_conf 99999999999849999999964546------------78878999999934489999973
No 128
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.58 E-value=0.00011 Score=48.06 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=32.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 718999889999989999999851898179986118889998323553000123542111
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGW 61 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~ 61 (185)
|..++|+||||||||||++.|+.-.+--...|. .||.+..=++.+.+.+.
T Consensus 29 Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~----------idg~~i~~~~~~~~r~~ 78 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMRFYDPQKGQIL----------IDGIDIRDISRKSLRSM 78 (229)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE----------ECCEECCCCCHHHHHHC
T ss_conf 999999999998099999999668667873899----------99999541899999632
No 129
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.58 E-value=8.5e-05 Score=48.62 Aligned_cols=140 Identities=12% Similarity=0.180 Sum_probs=73.4
Q ss_pred ECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEEECCCHHH
Q ss_conf 88999998999999985189817998611888999832355300012354211102763644555048605544320023
Q gi|254781197|r 8 IGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLKEDINN 87 (185)
Q Consensus 8 ~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt~~~~i~~ 87 (185)
+|.||+||||+...|.+... ..+ +||-|.| +++..++|-. |.=|--..-.+ |-....++...
T Consensus 1 MGVsG~GKStvg~~lA~~lg-~~f-------------idGDdlH--p~aNi~KM~~-GiPL~DdDR~p-WL~~l~~~~~~ 62 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLG-AKF-------------IDGDDLH--PPANIEKMSA-GIPLNDDDRWP-WLEALGDAAAS 62 (161)
T ss_pred CCCCCCCHHHHHHHHHHHCC-CCE-------------ECCCCCC--CHHHHHHHHC-CCCCCCCHHHH-HHHHHHHHHHH
T ss_conf 98776577799999999809-823-------------3356569--9889998727-99898411247-99999999998
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHCCCC-------CHHHHHHCCCCHHHHHHHHHHCCCCC--HHHHHHHHH---H-HHHCC
Q ss_conf 33201232002431000133210553-------10112221332899999886303420--789999999---8-76369
Q gi|254781197|r 88 PMEHGYDILLILTHQGLAPLKKLYED-------QVTSIFIAPPSEAELIQRRIKRREDT--PFNLDPDLF---G-KNHSY 154 (185)
Q Consensus 88 ~~~~g~~~il~id~~G~~~lk~~~~~-------~~~~IfI~pps~~~L~~RL~~R~~d~--~~~i~~rl~---~-~~~~f 154 (185)
..+.|+..++.+. + ||+.|.+ .+..||+.. +.+.+.+|+..|..-- ..-+..-+. . ...+
T Consensus 63 ~~~~~~~~vi~CS---A--LKr~YRD~LR~~~~~~~Fv~L~g-~~~~i~~Rm~~R~gHFM~~~ll~SQfa~LE~P~~de- 135 (161)
T COG3265 63 LAQKNKHVVIACS---A--LKRSYRDLLREANPGLRFVYLDG-DFDLILERMKARKGHFMPASLLDSQFATLEEPGADE- 135 (161)
T ss_pred HHCCCCCEEEECH---H--HHHHHHHHHHCCCCCEEEEEECC-CHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCC-
T ss_conf 6427981699627---8--87889999854599738999638-899999998760567788899998999835899998-
Q ss_pred CEEEEC-C-CHHHHHHHHHH
Q ss_conf 889993-9-78999999999
Q gi|254781197|r 155 SFTIVN-N-HLPTACRQVGF 172 (185)
Q Consensus 155 D~~IvN-d-dle~a~~~l~~ 172 (185)
|.+.+. + .+++.+++...
T Consensus 136 ~vi~idi~~~~e~vv~~~~~ 155 (161)
T COG3265 136 DVLTIDIDQPPEEVVAQALA 155 (161)
T ss_pred CEEEEECCCCHHHHHHHHHH
T ss_conf 87986489998999999999
No 130
>TIGR00958 3a01208 antigen peptide transporter 2; InterPro: IPR005293 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Proteins of this family are involved in the transport of antigens from the cytoplasm to a membrane-bound compartment for association with MHC class I molecules.; GO: 0005215 transporter activity, 0006810 transport.
Probab=97.57 E-value=6e-05 Score=49.50 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=19.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|+...|+||||+||||++-- +++
T Consensus 559 G~vvALVGPsGsGKStvaaL-L~n 581 (770)
T TIGR00958 559 GEVVALVGPSGSGKSTVAAL-LQN 581 (770)
T ss_pred CEEEEEECCCCCCHHHHHHH-HHH
T ss_conf 62599865899839999999-985
No 131
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.57 E-value=0.0001 Score=48.14 Aligned_cols=141 Identities=19% Similarity=0.224 Sum_probs=66.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEE-----EEECCC-CCC-CCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEE
Q ss_conf 97189998899999899999998518981799-----861188-899-98323553000123542111027636445550
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSEYLVMP-----VGVTTR-RPR-VDEKQYIDYRFISQSQFKGWKHTGLFIETTKV 73 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~-----is~TTR-~~R-~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~ 73 (185)
|.+-||++|+-|+|||||.+.|.+.. ++.|. |.-.|. +.. -=|.+|.+ .|.. +|.
T Consensus 1 ~~~~IvLiG~mGaGKSTIGr~LAk~L-~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~-------~FR~-------~E~--- 62 (172)
T COG0703 1 RNMNIVLIGFMGAGKSTIGRALAKAL-NLPFIDTDQEIEKRTGMSIAEIFEEEGEE-------GFRR-------LET--- 62 (172)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHC-CCCCCCCHHHHHHHHCCCHHHHHHHHHHH-------HHHH-------HHH---
T ss_conf 99618997179997768999999981-99802246999999796999999998289-------9999-------999---
Q ss_pred CCCEEEEECCCHHHHH-------HHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCC------CCCH
Q ss_conf 4860554432002333-------20123200243100013321055310112221332899999886303------4207
Q gi|254781197|r 74 RDEYYGYLKEDINNPM-------EHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRR------EDTP 140 (185)
Q Consensus 74 ~g~~YGt~~~~i~~~~-------~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~------~d~~ 140 (185)
..+.+.+ +.|.-+++ +.+ .+. .......+||+.+ +.+.+.+|+.... ..++
T Consensus 63 ---------~vl~~l~~~~~~ViaTGGG~v~--~~e-nr~---~l~~~g~vv~L~~-~~e~l~~Rl~~~~~RPll~~~~~ 126 (172)
T COG0703 63 ---------EVLKELLEEDNAVIATGGGAVL--SEE-NRN---LLKKRGIVVYLDA-PFETLYERLQRDRKRPLLQTEDP 126 (172)
T ss_pred ---------HHHHHHHHCCCEEEECCCCCCC--CHH-HHH---HHHHCCEEEEEEC-CHHHHHHHHCCCCCCCCCCCCCH
T ss_conf ---------9999986269959977986116--899-999---9984885899969-99999998234667986567776
Q ss_pred -H----HHHHHHHHHHHCCCEEEECCCH-HHHHHHHHHHHHHHH
Q ss_conf -8----9999999876369889993978-999999999999998
Q gi|254781197|r 141 -F----NLDPDLFGKNHSYSFTIVNNHL-PTACRQVGFIREFVK 178 (185)
Q Consensus 141 -~----~i~~rl~~~~~~fD~~IvNddl-e~a~~~l~~I~e~~~ 178 (185)
+ -.++|..-+..--|+++..++- +..+++ |.+.+.
T Consensus 127 ~~~l~~L~~~R~~~Y~e~a~~~~~~~~~~~~v~~~---i~~~l~ 167 (172)
T COG0703 127 REELEELLEERQPLYREVADFIIDTDDRSEEVVEE---ILEALE 167 (172)
T ss_pred HHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHH---HHHHHH
T ss_conf 89999999998999997274884489984899999---999998
No 132
>KOG0056 consensus
Probab=97.56 E-value=9e-05 Score=48.47 Aligned_cols=51 Identities=22% Similarity=0.257 Sum_probs=38.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 7189998899999899999998518981799861188899983235530001235421110
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK 62 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i 62 (185)
||.+.++||||+||+||++.|..-++--..+| ++||+|-.-|+.....+-|
T Consensus 564 GktvAlVG~SGaGKSTimRlLfRffdv~sGsI----------~iDgqdIrnvt~~SLRs~I 614 (790)
T KOG0056 564 GKTVALVGPSGAGKSTIMRLLFRFFDVNSGSI----------TIDGQDIRNVTQSSLRSSI 614 (790)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCEE----------EECCCHHHHHHHHHHHHHC
T ss_conf 96899977898866689999999940557608----------9867017888799899756
No 133
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.56 E-value=0.00013 Score=47.56 Aligned_cols=49 Identities=16% Similarity=0.185 Sum_probs=31.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 71899988999998999999985189817998611888999832355300012354211
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKG 60 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~ 60 (185)
|..+.|+||||||||||++.|+...+--...|. .||+|..-++.+...+
T Consensus 34 Ge~v~ivG~sGsGKSTLl~ll~g~~~p~~G~I~----------idg~di~~~~~~~~r~ 82 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFRFLEAEEGKIE----------IDGIDISTIPLEDLRS 82 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEE----------ECCEECCCCCHHHHHH
T ss_conf 999999999998799999999987288887899----------9999954079999995
No 134
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.56 E-value=0.00011 Score=47.93 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=20.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+||||||||||.+-+..-
T Consensus 24 Ge~~~i~GpSGsGKSTLL~~i~gl 47 (206)
T TIGR03608 24 GKMVAIVGESGSGKSTLLNIIGLL 47 (206)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999879997099999999759
No 135
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.55 E-value=0.0001 Score=48.10 Aligned_cols=50 Identities=18% Similarity=0.143 Sum_probs=31.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 718999889999989999999851898179986118889998323553000123542111
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGW 61 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~ 61 (185)
|..+.|+||||||||||++.|+.-++.-...|. .||++-.=++.+++.+.
T Consensus 30 G~~v~ivG~sGsGKSTLl~ll~gl~~p~~G~I~----------i~g~~~~~~~~~~~r~~ 79 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL----------LDGTDIRQLDPADLRRN 79 (220)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE----------ECCEEHHHHCHHHHHHC
T ss_conf 999999999998599999999672547865899----------99999577259999732
No 136
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.55 E-value=6.6e-05 Score=49.27 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=20.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|-+++|+||||||||||.+-+..-
T Consensus 50 GEi~~lvGpSGsGKSTLLr~i~GL 73 (382)
T TIGR03415 50 GEICVLMGLSGSGKSSLLRAVNGL 73 (382)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999973499999999759
No 137
>PRK13973 thymidylate kinase; Provisional
Probab=97.54 E-value=7.8e-05 Score=48.83 Aligned_cols=164 Identities=13% Similarity=0.137 Sum_probs=76.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEE------EEEEEEC-
Q ss_conf 718999889999989999999851898179986118889998323553000123542111027636------4455504-
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLF------IETTKVR- 74 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~f------lE~~~~~- 74 (185)
|++|+|=|..||||+|.++.|.+....-... ..+||.|-.... | +...+++.++.. .|.--+.
T Consensus 3 G~fIv~EGiDGsGKsTq~~~L~~~L~~~g~~-v~~trePg~t~~-~--------e~ir~~ll~~~~~~~~~~~e~lLfaA 72 (216)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYD-VLVTREPGGSPG-A--------EAIRHVLLSGAAELYGPAMEALLFAA 72 (216)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCC-EEEEECCCCCCC-H--------HHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 2499988999998999999999999977995-799409899840-8--------99999984666578998999999999
Q ss_pred CCEEEEECCCHHHHHHHCCCCCCCCCC------CCHH---------HHHH-----CCCCCHHHHHHCCCCHHHHHHHHHH
Q ss_conf 860554432002333201232002431------0001---------3321-----0553101122213328999998863
Q gi|254781197|r 75 DEYYGYLKEDINNPMEHGYDILLILTH------QGLA---------PLKK-----LYEDQVTSIFIAPPSEAELIQRRIK 134 (185)
Q Consensus 75 g~~YGt~~~~i~~~~~~g~~~il~id~------~G~~---------~lk~-----~~~~~~~~IfI~pps~~~L~~RL~~ 134 (185)
..+.- ...-|...+++|++||+|==+ +|+. .+.. ..|+ .+||+..| .++-.+|+.+
T Consensus 73 ~R~eh-~~~~I~paL~~g~~VI~DRy~~Ss~AYQg~~~~~~~~~l~~l~~~~~~~~~PD--lti~LDv~-~e~a~~R~~~ 148 (216)
T PRK13973 73 ARDDH-VEEVIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPD--LTLILDIP-AEVGLERAAK 148 (216)
T ss_pred HHHHH-HHHHHHHHHHCCCEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC--EEEEECCC-HHHHHHHHHH
T ss_conf 99999-99999999977998986786257999977427889899999999996799999--89998188-8999999998
Q ss_pred CCCCCH-H-------HHHHHHHH-----HHHC-CCEEEEC--CCHHHHHHHHHHHH-HHHHH
Q ss_conf 034207-8-------99999998-----7636-9889993--97899999999999-99985
Q gi|254781197|r 135 RREDTP-F-------NLDPDLFG-----KNHS-YSFTIVN--NHLPTACRQVGFIR-EFVKQ 179 (185)
Q Consensus 135 R~~d~~-~-------~i~~rl~~-----~~~~-fD~~IvN--ddle~a~~~l~~I~-e~~~~ 179 (185)
|+.... + +...+... +..+ -.+++++ .+.++..++|-.++ +.+..
T Consensus 149 R~~~~~~dr~E~~~~~f~~kVr~~Y~~la~~~~~r~~vIDa~~s~eeV~~~I~~~v~~~L~e 210 (216)
T PRK13973 149 RRGSETPDRFEKEDLAFHEKRREAFLQIAAQEPERCVVIDADASPEAVAAEIWAAVDQRLLE 210 (216)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHC
T ss_conf 35776300255647999999999999999859887899719999999999999999998621
No 138
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.53 E-value=7.1e-05 Score=49.09 Aligned_cols=23 Identities=35% Similarity=0.690 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
|.+++|+||||||||||.+-+..
T Consensus 26 Ge~~~ivGpSGsGKSTLL~~i~g 48 (213)
T cd03262 26 GEVVVIIGPSGSGKSTLLRCINL 48 (213)
T ss_pred CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 98999999998449999999981
No 139
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein; InterPro: IPR005666 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are involved in the transmembrane transport of sulphate and thiosulphate.; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane.
Probab=97.53 E-value=6.7e-05 Score=49.21 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
|+++.+.|||||||+||.+.+..
T Consensus 26 G~lvaLLGPSGSGKsTLLR~iAG 48 (241)
T TIGR00968 26 GSLVALLGPSGSGKSTLLRVIAG 48 (241)
T ss_pred CEEEEEECCCCCCHHHHHHHHHC
T ss_conf 52798546898737899999835
No 140
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.52 E-value=0.00015 Score=47.14 Aligned_cols=55 Identities=22% Similarity=0.316 Sum_probs=35.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC--CCCCCCCCCCHHHHHHHCCCCEEE
Q ss_conf 7189998899999899999998518981799861188899983--235530001235421110276364
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDE--KQYIDYRFISQSQFKGWKHTGLFI 68 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E--~~g~dY~Fvs~e~F~~~i~~g~fl 68 (185)
|.++.|+||||||||||.+.+..-.. |..|+ .+|++..=.+..++..+..+=.|+
T Consensus 31 Ge~~~ivG~SGsGKSTllr~i~gL~~------------p~sG~I~~~g~~i~~~~~~~~~~~Rr~ig~V 87 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGLER------------PTSGSVLVDGTDLTLLSGKELRKARRRIGMI 87 (233)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC------------CCCCEEEECCEECCCCCHHHHHHHHCCCCEE
T ss_conf 99999988980589999999967999------------9980899999998979999999986258779
No 141
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.52 E-value=7.9e-05 Score=48.80 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+|||||||||+.+.|..-
T Consensus 26 Ge~~~iiG~SGsGKSTll~~i~gL 49 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 989999999998199999999744
No 142
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.52 E-value=0.00012 Score=47.72 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|..+.|+||||||||||++.|+.-.+
T Consensus 28 G~~vaIvG~sGsGKSTLl~ll~gl~~ 53 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99999999999809999999966666
No 143
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=97.52 E-value=0.00012 Score=47.81 Aligned_cols=158 Identities=16% Similarity=0.102 Sum_probs=78.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEE-EEECCCC--------------CCCCCC---CCC-------CCCCCCH
Q ss_conf 97189998899999899999998518981799-8611888--------------999832---355-------3000123
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSEYLVMP-VGVTTRR--------------PRVDEK---QYI-------DYRFISQ 55 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~-is~TTR~--------------~R~~E~---~g~-------dY~Fvs~ 55 (185)
|..+|-|+|-.||||||+++.+.+ . ++... ---..|. .+..+. ||. +++|-+.
T Consensus 1 ~~~iIglTG~igsGKStva~~~~~-~-G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~ 78 (201)
T COG0237 1 MMLIIGLTGGIGSGKSTVAKILAE-L-GFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDP 78 (201)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-C-CCEEEECCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCH
T ss_conf 964999957887788999999997-7-99399886999998845635789999984997656651058999999973899
Q ss_pred HHHHHHCCCCEEEEEEEECCCEEEEECCCH---HHHHHHCCCCCCCCCCCCHHHHHHCCCCC-H-HHHHHCCCCHHHHHH
Q ss_conf 542111027636445550486055443200---23332012320024310001332105531-0-112221332899999
Q gi|254781197|r 56 SQFKGWKHTGLFIETTKVRDEYYGYLKEDI---NNPMEHGYDILLILTHQGLAPLKKLYEDQ-V-TSIFIAPPSEAELIQ 130 (185)
Q Consensus 56 e~F~~~i~~g~flE~~~~~g~~YGt~~~~i---~~~~~~g~~~il~id~~G~~~lk~~~~~~-~-~~IfI~pps~~~L~~ 130 (185)
+.-..+-+ +.| . ..++.+ .+....+ .+++++. -|.+..+.. + .+|.|.+| .+.-.+
T Consensus 79 ~~~~~Le~----i~h----P----li~~~~~~~~~~~~~~-~~~~eip-----lL~e~~~~~~~d~Vi~V~a~-~e~r~e 139 (201)
T COG0237 79 EARLKLEK----ILH----P----LIRAEIKVVIDGARSP-YVVLEIP-----LLFEAGGEKYFDKVIVVYAP-PEIRLE 139 (201)
T ss_pred HHHHHHHH----HHH----H----HHHHHHHHHHHHHHCC-CEEEEEH-----HHHHHCCCCCCCEEEEEECC-HHHHHH
T ss_conf 99999996----655----8----9999999999974167-6388707-----88872666668889999899-999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHH------HCCCEEEECC-CHHHHHHHHHHHHHHHHH
Q ss_conf 886303420789999999876------3698899939-789999999999999985
Q gi|254781197|r 131 RRIKRREDTPFNLDPDLFGKN------HSYSFTIVNN-HLPTACRQVGFIREFVKQ 179 (185)
Q Consensus 131 RL~~R~~d~~~~i~~rl~~~~------~~fD~~IvNd-dle~a~~~l~~I~e~~~~ 179 (185)
|+.+|+..+.+....|+.... ..=|+++.|+ +++...+++..+...+..
T Consensus 140 Rl~~R~~~~~e~~~~~~~~Q~~~~ek~~~ad~vi~n~~~i~~l~~~i~~~~~~~~~ 195 (201)
T COG0237 140 RLMKRDGLDEEDAEARLASQRDLEEKLALADVVIDNDGSIENLLEQIEKLLKELLG 195 (201)
T ss_pred HHHHCCCCCHHHHHHHHHHCCCHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99833799999999999873899998631464766487799999999999999987
No 144
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.52 E-value=0.00015 Score=47.19 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|.++.|+||||||||||++.|+.-.+
T Consensus 30 Ge~v~ivG~sGsGKSTLl~ll~gl~~ 55 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRLVE 55 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 98999999999989999999967971
No 145
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.51 E-value=7.9e-05 Score=48.82 Aligned_cols=23 Identities=35% Similarity=0.677 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
|.+++|+||||||||||.+.|..
T Consensus 54 GEi~~ivG~SGsGKSTLlr~i~g 76 (400)
T PRK10070 54 GEIFVIMGLSGSGKSTMVRLLNR 76 (400)
T ss_pred CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 99999999998469999999975
No 146
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.50 E-value=0.00012 Score=47.72 Aligned_cols=26 Identities=19% Similarity=0.460 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|..+.|+||||||||||++.|+.-++
T Consensus 63 Ge~vaIVG~sGSGKSTLl~lL~gl~~ 88 (282)
T cd03291 63 GEMLAITGSTGSGKTSLLMLILGELE 88 (282)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99999999999819999999957872
No 147
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.50 E-value=0.00026 Score=45.82 Aligned_cols=165 Identities=17% Similarity=0.236 Sum_probs=77.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECC-----CCCCCCCCCCCCCCCCCHHHHHH---HCCCCEEEEEEEEC-
Q ss_conf 8999889999989999999851898179986118-----88999832355300012354211---10276364455504-
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTT-----RRPRVDEKQYIDYRFISQSQFKG---WKHTGLFIETTKVR- 74 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TT-----R~~R~~E~~g~dY~Fvs~e~F~~---~i~~g~flE~~~~~- 74 (185)
+|.|-|+||+|||||+-.|.... ++..+||.-| |..-+.|..= .+-...|.. +...+.=.+-....
T Consensus 264 iILIGGaSGvGKSTlAseLA~RL-GI~~VIsTDsIREVMR~~is~el~P----~Lh~SSy~Awk~L~~~~~~~~~~~~~~ 338 (492)
T PRK12337 264 HVLLGGVSGTGKSVLAAELAYRL-GITRVVPTDAIREVMRAMVSKDLLP----TLHASTFNAWEALVPPGLGLPGEPTRV 338 (492)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHCCHHHCC----HHHHHHHHHHHHCCCCCCCCCCCCCHH
T ss_conf 99960788866888999999960-9881025447999999845976484----577755688886087345777786076
Q ss_pred CCEEEE---------ECCC-HHHHHHHCCCCCCCCCCCCHH----HHHHCC--CCCHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 860554---------4320-023332012320024310001----332105--531011222133289999988630342
Q gi|254781197|r 75 DEYYGY---------LKED-INNPMEHGYDILLILTHQGLA----PLKKLY--EDQVTSIFIAPPSEAELIQRRIKRRED 138 (185)
Q Consensus 75 g~~YGt---------~~~~-i~~~~~~g~~~il~id~~G~~----~lk~~~--~~~~~~IfI~pps~~~L~~RL~~R~~d 138 (185)
-..+|. ..++ |+.++.+|.++|++ |+. .++..+ ...++++.+..++.+..++|+..|+..
T Consensus 339 ~vi~GF~~Qv~~V~vGl~aVieRa~~EG~SvVIE----GVHLvPg~i~~~~~e~~~vIp~mV~i~dEe~Hr~RF~~R~r~ 414 (492)
T PRK12337 339 ELLAGFRDQVQQVSVGLKAVVRRSILEGTSLVLE----GVHLVPGYLQHAYQDGALTVPMLVALPDEEEHRRHFELRDRE 414 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE----EEEECHHHHHHHHCCCCEEEEEEEEECCHHHHHHHHHHHHHH
T ss_conf 8998999999999999999999999728867998----333070666666415873899999847679999999987514
Q ss_pred CH-----H----------HHHHHHHHHHHCCCE-EEECCCHHHHHHHH-HHHHHHH
Q ss_conf 07-----8----------999999987636988-99939789999999-9999999
Q gi|254781197|r 139 TP-----F----------NLDPDLFGKNHSYSF-TIVNNHLPTACRQV-GFIREFV 177 (185)
Q Consensus 139 ~~-----~----------~i~~rl~~~~~~fD~-~IvNddle~a~~~l-~~I~e~~ 177 (185)
.. + .|+.-+....++++. +|.|.|+++++++. .-|.+++
T Consensus 415 t~~~Rp~ekYLk~F~eIR~IQdyLv~rAre~gVPVI~n~~ldesvd~~~evi~~r~ 470 (492)
T PRK12337 415 TAASRPLHRYMRHFEEIRLMQDHLLRLAREEDVPVLDGETLDESADKAVEVVLRYV 470 (492)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 10368601799979999999999999998749982078766779999999999999
No 148
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.49 E-value=0.00013 Score=47.64 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||||||||||++.+..-.
T Consensus 31 Ge~~~iiG~sGsGKSTLl~~i~Gl~ 55 (228)
T cd03257 31 GETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999986999999997289
No 149
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.48 E-value=0.00018 Score=46.73 Aligned_cols=126 Identities=18% Similarity=0.264 Sum_probs=63.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEECC---CCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEE
Q ss_conf 1899988999998999999985189-8179986118---88999832355300012354211102763644555048605
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQVVLNSE-YLVMPVGVTT---RRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYY 78 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L~~~~~-~~~~~is~TT---R~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~Y 78 (185)
.+|+++|+.||||+|.+++|.+... ....+++-+. |-.+-+|-.++- +=+-++.|.+-.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~-ke~yres~~ks~---------------- 64 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPIL-KEVYRESFLKSV---------------- 64 (261)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHEECCCCCCHH-HHHHHHHHHHHH----------------
T ss_conf 569982699988017899999999972001121320145412331324037-999999998889----------------
Q ss_pred EEECCCHHHHHHHCCCCCCCCCCC---CHH-HH----HHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 544320023332012320024310---001-33----2105531011222133289999988630342078999999987
Q gi|254781197|r 79 GYLKEDINNPMEHGYDILLILTHQ---GLA-PL----KKLYEDQVTSIFIAPPSEAELIQRRIKRREDTPFNLDPDLFGK 150 (185)
Q Consensus 79 Gt~~~~i~~~~~~g~~~il~id~~---G~~-~l----k~~~~~~~~~IfI~pps~~~L~~RL~~R~~d~~~~i~~rl~~~ 150 (185)
...+..+++ +..||+| |.+ |.+ +| ++. ...-..|++.+| .+.+.+|-.+||.--++++-++++..
T Consensus 65 ---~rlldSalk-n~~VIvD-dtNYyksmRrqL~ceak~~-~tt~ciIyl~~p-lDtc~rrN~ergepip~Evl~qly~R 137 (261)
T COG4088 65 ---ERLLDSALK-NYLVIVD-DTNYYKSMRRQLACEAKER-KTTWCIIYLRTP-LDTCLRRNRERGEPIPEEVLRQLYDR 137 (261)
T ss_pred ---HHHHHHHHC-CEEEEEE-CCCHHHHHHHHHHHHHHHC-CCCEEEEEECCC-HHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf ---999999863-6499970-6328889999999999863-786599997268-89998860247999989999999996
Q ss_pred HH
Q ss_conf 63
Q gi|254781197|r 151 NH 152 (185)
Q Consensus 151 ~~ 152 (185)
.+
T Consensus 138 fE 139 (261)
T COG4088 138 FE 139 (261)
T ss_pred HC
T ss_conf 14
No 150
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.48 E-value=0.0002 Score=46.51 Aligned_cols=48 Identities=17% Similarity=0.097 Sum_probs=29.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 7189998899999899999998518981799861188899983235530001235421
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFK 59 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~ 59 (185)
|.++.|+||||||||||++-+..-.+.-...|. .+|++..-.++++..
T Consensus 36 GE~v~ivG~sGsGKSTLl~~i~Gl~~p~~G~I~----------~~G~~~~~~~~~~~~ 83 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAGLDDGSSGEVS----------LVGQPLHNMDEEARA 83 (228)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEE----------ECCEECCCCCHHHHH
T ss_conf 989999999985899999999669999967999----------999999979988998
No 151
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.47 E-value=0.00014 Score=47.29 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+|||||||||+++-+..-
T Consensus 26 Ge~~~iiG~SGsGKSTll~~i~gL 49 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999997299999999759
No 152
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.47 E-value=0.00014 Score=47.35 Aligned_cols=26 Identities=12% Similarity=0.432 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|+++.|+||||||||||.+.|+...+
T Consensus 27 Ge~~~IvG~sGsGKSTLl~~l~g~~~ 52 (218)
T cd03290 27 GQLTMIVGQVGCGKSSLLLAILGEMQ 52 (218)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999999809999999855565
No 153
>KOG3209 consensus
Probab=97.45 E-value=4e-05 Score=50.50 Aligned_cols=52 Identities=31% Similarity=0.418 Sum_probs=48.4
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEEECC
Q ss_conf 799861188899983235530001235421110276364455504860554432
Q gi|254781197|r 30 VMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLKE 83 (185)
Q Consensus 30 ~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt~~~ 83 (185)
.+.+++|||+++.+|++ ||-|.+...|..+-..|.|+|...|.++||||++-
T Consensus 64 ~~~~~~~~~~~~~~~~~--d~~fs~~~~~l~l~~~~~~l~~~~~~~~~ygtPkP 115 (984)
T KOG3209 64 LFQVPCTTRRILEGEVP--DYSFSTVPIFLCLEVSGCLLEFGTYESNYYGTPKP 115 (984)
T ss_pred CCCCCCCCCCCCCCCCC--CCCCCCCHHHHEEEECCEEECCCCCCCCCCCCCCC
T ss_conf 13466543354556667--40003520221011123451136766578899998
No 154
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.45 E-value=0.00011 Score=48.02 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.+++|+||||+||||+.+-+..-
T Consensus 26 Ge~~~ivGpSG~GKSTllr~i~Gl 49 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999998399999999859
No 155
>TIGR00630 uvra excinuclease ABC, A subunit; InterPro: IPR004602 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products . The UvrC protein contain 4 conserved regions: a central region which interact with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0009380 excinuclease repair complex.
Probab=97.45 E-value=0.0001 Score=48.16 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=15.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 97189998899999899999998
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVV 23 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~ 23 (185)
||.+.+|+|+||||||||++..+
T Consensus 664 LG~~t~iTGVSGSGKSTLind~L 686 (956)
T TIGR00630 664 LGLFTCITGVSGSGKSTLINDTL 686 (956)
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 77179997445874577799999
No 156
>PRK00098 ribosome-associated GTPase; Reviewed
Probab=97.45 E-value=8.6e-05 Score=48.61 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
||.-+++||||||||||++.|...
T Consensus 164 ~k~sv~~G~SGVGKSSLiN~L~~~ 187 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALVPE 187 (298)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCH
T ss_conf 986999878988788888760714
No 157
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.45 E-value=0.00023 Score=46.08 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||||||||||++.|..-.
T Consensus 34 Gei~~iiGpnGsGKSTLlk~i~Gl~ 58 (269)
T PRK11831 34 GKITAIMGPSGIGKTTLLRLIGGQI 58 (269)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999399975999999996798
No 158
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00022 Score=46.21 Aligned_cols=51 Identities=24% Similarity=0.270 Sum_probs=33.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 7189998899999899999998518981799861188899983235530001235421110
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK 62 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i 62 (185)
|+.++|+||||+|||||.+.|....+-....+ + +||++--=++.+.+.+-+
T Consensus 347 g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I-------~---vng~~l~~l~~~~~~k~i 397 (559)
T COG4988 347 GQLTALVGASGAGKSTLLNLLLGFLAPTQGEI-------R---VNGIDLRDLSPEAWRKQI 397 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-------E---ECCCCCCCCCHHHHHHHE
T ss_conf 96799988999978999999847577778448-------8---899310006877888672
No 159
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.44 E-value=0.00016 Score=46.99 Aligned_cols=51 Identities=20% Similarity=0.162 Sum_probs=34.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 7189998899999899999998518981799861188899983235530001235421110
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK 62 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i 62 (185)
|..+.|+||||||||||++-|..-++--...|. .||+|..=++.+++.+.+
T Consensus 491 Ge~vaIvG~sGsGKSTL~kll~Gl~~p~~G~i~----------idg~~~~~~~~~~~r~~i 541 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVL----------LDGVDIRQIDPADLRRNI 541 (694)
T ss_pred CCEEEEEECCCCCHHHHHHHHCCCCCCCCCEEE----------ECCEECCCCCHHHHHHHC
T ss_conf 978999805898788999985567589988799----------898542549999997302
No 160
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.44 E-value=0.00011 Score=48.00 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.+++|+||||||||||.+.+..-
T Consensus 24 Ge~~~ilGpSGsGKSTLl~li~Gl 47 (211)
T cd03298 24 GEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999995599999999769
No 161
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.44 E-value=0.0002 Score=46.47 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|.++.|+||||||||||.+.+..-.+
T Consensus 25 GE~v~iiG~nGaGKSTLl~~i~Gll~ 50 (233)
T PRK10771 25 GEQVAILGPSGAGKSTLLNLIAGFLT 50 (233)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 98999999999819999999965999
No 162
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.44 E-value=0.00019 Score=46.61 Aligned_cols=49 Identities=10% Similarity=0.145 Sum_probs=30.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 71899988999998999999985189817998611888999832355300012354211
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKG 60 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~ 60 (185)
|..+.|+||||||||||++.|+.-.+-....|. .||+|-.-++.+.+.+
T Consensus 47 Ge~vaIvG~sGsGKSTL~~ll~gl~~p~~G~I~----------idg~di~~~~~~~lr~ 95 (257)
T cd03288 47 GQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIV----------IDGIDISKLPLHTLRS 95 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEE----------ECCEEHHHCCHHHHHH
T ss_conf 999999999998199999999605667888899----------9989968799999975
No 163
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.44 E-value=0.00011 Score=47.88 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=20.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
|.+++|+|||||||||+.+-+..
T Consensus 26 Ge~~~iiGpSGsGKSTllr~i~G 48 (232)
T cd03300 26 GEFFTLLGPSGCGKTTLLRLIAG 48 (232)
T ss_pred CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 98999999999839999999977
No 164
>PRK13808 adenylate kinase; Provisional
Probab=97.43 E-value=0.00071 Score=43.24 Aligned_cols=158 Identities=18% Similarity=0.244 Sum_probs=77.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCC-CCCCCCCC---C----CCCCCHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 999889999989999999851898179986118889-99832355---3----000123542111027636445550486
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRP-RVDEKQYI---D----YRFISQSQFKGWKHTGLFIETTKVRDE 76 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~-R~~E~~g~---d----Y~Fvs~e~F~~~i~~g~flE~~~~~g~ 76 (185)
|||.||.||||.|.+..|.+.+.-.+++.---=|.. ..+..-|. + =.+|+++-...|+.+.- -+...-+|+
T Consensus 3 IIlLGPPGsGKGTQA~~L~~~~gi~hISTGDmLR~aI~~~T~LG~kaK~im~~G~LVPDeIVi~lI~erL-~~~d~~~Gf 81 (297)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRI-EQPDAANGF 81 (297)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-CCCCCCCCE
T ss_conf 9997899998589999999986988675869999999759987999999997669888899999999996-685667898
Q ss_pred -EEEEECCCHHHHHHHCCCCCCCCCCCCHHHHHHC-CCCCHHHHHHCCCCHHHHHHHHHHC------------CCCCHHH
Q ss_conf -0554432002333201232002431000133210-5531011222133289999988630------------3420789
Q gi|254781197|r 77 -YYGYLKEDINNPMEHGYDILLILTHQGLAPLKKL-YEDQVTSIFIAPPSEAELIQRRIKR------------REDTPFN 142 (185)
Q Consensus 77 -~YGt~~~~i~~~~~~g~~~il~id~~G~~~lk~~-~~~~~~~IfI~pps~~~L~~RL~~R------------~~d~~~~ 142 (185)
+=|.|+ ++.++-... - .|... ...+ .+|.+.. +.+.|.+|+..| ..|+++.
T Consensus 82 ILDGFPR-Tv~QAEaLD--~----------~L~~~g~~LD-~VIel~V-dd~~Lv~RI~~R~~e~~a~Ge~~R~DDn~E~ 146 (297)
T PRK13808 82 ILDGFPR-TVPQAEALD--A----------LLKDKQLKLD-AVVELRV-NEGALLARVETRVAEMRARGEEVRADDTPEV 146 (297)
T ss_pred EEECCCC-CHHHHHHHH--H----------HHHHCCCCCC-EEEEEEC-CHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
T ss_conf 7228999-989999999--9----------9981899978-6899767-8899999999888877614887888999999
Q ss_pred HHHHHHHHHHC-------CC----EEEEC--CCHHHHHHHHHHHHHHHH
Q ss_conf 99999987636-------98----89993--978999999999999998
Q gi|254781197|r 143 LDPDLFGKNHS-------YS----FTIVN--NHLPTACRQVGFIREFVK 178 (185)
Q Consensus 143 i~~rl~~~~~~-------fD----~~IvN--ddle~a~~~l~~I~e~~~ 178 (185)
+..||..+..+ |. ..-|+ .++|+...+|..|..-+.
T Consensus 147 ~~kRL~~Y~~qT~Pl~~yY~e~~~L~~VDGm~~IDeVt~~I~r~l~a~~ 195 (297)
T PRK13808 147 LAKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVG 195 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999998201259998716957862286609999999999999984
No 165
>KOG0061 consensus
Probab=97.43 E-value=0.00024 Score=46.03 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=35.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC---CEEEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf 71899988999998999999985189---81799861188899983235530001235
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE---YLVMPVGVTTRRPRVDEKQYIDYRFISQS 56 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~---~~~~~is~TTR~~R~~E~~g~dY~Fvs~e 56 (185)
|.|..|+|||||||+||.+.|....+ .+...|..--|++........ .-||.++
T Consensus 56 Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~-s~yV~Qd 112 (613)
T KOG0061 56 GELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKI-SGYVQQD 112 (613)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHC-CEEECCC
T ss_conf 86899976888779999999957788788761599989822764552000-3478133
No 166
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.43 E-value=0.0002 Score=46.49 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+||||||||||.+-+..-
T Consensus 28 GE~~~llGpSGsGKSTLlr~iaGL 51 (352)
T PRK10851 28 GQMVALLGPSGSGKTTLLRIIAGL 51 (352)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999984699999999769
No 167
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.42 E-value=0.00021 Score=46.32 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.+++|+||||||||||.+-+..-
T Consensus 26 Ge~~~i~GpSG~GKSTlLr~iaGl 49 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999988099999999769
No 168
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.42 E-value=0.00011 Score=47.95 Aligned_cols=48 Identities=25% Similarity=0.403 Sum_probs=30.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC--CCCCCCCCCCHHHHHHH
Q ss_conf 7189998899999899999998518981799861188899983--23553000123542111
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDE--KQYIDYRFISQSQFKGW 61 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E--~~g~dY~Fvs~e~F~~~ 61 (185)
|.+++|+||||||||||.+.+..-.+ |-.|+ .+|++..-.+..++..+
T Consensus 50 GE~~~ivG~SGsGKSTLLr~i~GL~~------------p~~G~I~~~G~~i~~~~~~~l~~~ 99 (269)
T cd03294 50 GEIFVIMGLSGSGKSTLLRCINRLIE------------PTSGKVLIDGQDIAAMSRKELREL 99 (269)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC------------CCCEEEEECCEECCCCCHHHHHHH
T ss_conf 99999998998489999999975999------------997599999999999998999885
No 169
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=97.42 E-value=0.00034 Score=45.08 Aligned_cols=51 Identities=20% Similarity=0.219 Sum_probs=32.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 7189998899999899999998518981799861188899983235530001235421110
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK 62 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i 62 (185)
|.++.|+|+||||||||++.|+.-..--...|. .+|+|-.-.+..+.....
T Consensus 38 GE~l~ivGeSGsGKSTL~r~i~gl~~p~sG~I~----------~~g~~l~~~~~~~~~~~r 88 (266)
T PRK10419 38 GETVALLGRSGCGKSTLARLLVGLESPSQGNIS----------WRGEPLAKLNRAQRKAFR 88 (266)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEE----------ECCEECCCCCHHHHHHHH
T ss_conf 989999999997799999999669999962998----------899956758999999975
No 170
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.42 E-value=0.00013 Score=47.47 Aligned_cols=22 Identities=18% Similarity=0.472 Sum_probs=19.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 7189998899999899999998
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVV 23 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~ 23 (185)
|+++.|+||||||||||++.++
T Consensus 21 G~~~aIiG~sGsGKSTLl~~~L 42 (261)
T cd03271 21 GVLTCVTGVSGSGKSSLINDTL 42 (261)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 9999998799986999999998
No 171
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.42 E-value=0.00012 Score=47.77 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
|.+++|+||||||||||.+-+..
T Consensus 28 Ge~~~iiGpSGsGKSTll~~i~G 50 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAG 50 (239)
T ss_pred CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 98999999999779999999976
No 172
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=97.42 E-value=0.00011 Score=47.88 Aligned_cols=23 Identities=39% Similarity=0.735 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99988999998999999985189
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|+++||+|||||.|++.|.+...
T Consensus 530 FLF~GPTGVGKTElak~LA~~LG 552 (774)
T TIGR02639 530 FLFVGPTGVGKTELAKQLAEELG 552 (774)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 88647989625788999999708
No 173
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.41 E-value=6.1e-05 Score=49.47 Aligned_cols=28 Identities=32% Similarity=0.466 Sum_probs=22.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 9998899999899999998518981799
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEYLVMP 32 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~~~~~ 32 (185)
|+|.||.||||.|.++.|.+.+.-.+.+
T Consensus 3 iillGpPGsGKgT~a~~l~~~~~~~hiS 30 (225)
T PTZ00088 3 IVLFGAPGVGKGTFAEILSKKEKLKHIN 30 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEEC
T ss_conf 9998999998799999999987990687
No 174
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=97.41 E-value=0.00013 Score=47.49 Aligned_cols=21 Identities=19% Similarity=0.555 Sum_probs=18.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 7189998899999899999998
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVV 23 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~ 23 (185)
| +..|+||||||||||.+.|+
T Consensus 23 G-itaIvGpsGsGKSTLl~~i~ 43 (197)
T cd03278 23 G-LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred C-EEEEECCCCCCHHHHHHHHH
T ss_conf 8-28999999998899999999
No 175
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.41 E-value=0.00025 Score=45.90 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+||||||||||++.|..-
T Consensus 35 Ge~vaiiG~sGsGKSTLl~ll~Gl 58 (269)
T PRK13648 35 GQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999999999799999999649
No 176
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.40 E-value=0.00038 Score=44.82 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
|.++.|+||||||||||++-|..
T Consensus 26 Gei~~LvG~sGsGKSTL~~~l~G 48 (520)
T TIGR03269 26 GEVLGILGRSGAGKSVLMHVLRG 48 (520)
T ss_pred CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 98999999999699999999965
No 177
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.40 E-value=0.0002 Score=46.40 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=24.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 71899988999998999999985189817998
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPV 33 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~i 33 (185)
|..+.|+||||||||||++.|+.-.+.....|
T Consensus 27 Ge~v~i~G~sGsGKSTLl~~l~Gl~~~~~G~i 58 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCCCCCEE
T ss_conf 99999995899988999999869876998679
No 178
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.40 E-value=0.00013 Score=47.58 Aligned_cols=24 Identities=21% Similarity=0.529 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+||||||||||.+-+..-
T Consensus 25 Ge~~~iiGpSGsGKSTLlr~i~Gl 48 (235)
T cd03299 25 GDYFVILGPTGSGKSVLLETIAGF 48 (235)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999963599999999749
No 179
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.40 E-value=9.6e-05 Score=48.31 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=32.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC
Q ss_conf 999889999989999999851898179986118889998323
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQ 46 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~ 46 (185)
++|+|++.||||||.+.|..+...+.-..+.|||.+-.+..+
T Consensus 4 ValvG~pN~GKStL~N~l~g~~~~ivs~~pgtTrd~~~~~~~ 45 (157)
T cd04164 4 VVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESID 45 (157)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCEEECCCCCEEEECCEEEEE
T ss_conf 999889999899999999689733432889847863267895
No 180
>COG4639 Predicted kinase [General function prediction only]
Probab=97.40 E-value=0.00011 Score=48.04 Aligned_cols=119 Identities=23% Similarity=0.308 Sum_probs=61.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCC---CCCCC-CCCCCCCCHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 97189998899999899999998518981799861188899---98323-553000123542111027636445550486
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPR---VDEKQ-YIDYRFISQSQFKGWKHTGLFIETTKVRDE 76 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R---~~E~~-g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~ 76 (185)
|-.+++++|+|||||+|.+++...+.+-+.. --+|..+ .++.+ +.. +++.++
T Consensus 1 ~~~LvvL~G~~~sGKsT~ak~n~~~~~~lsl---d~~r~~lg~~~~~e~sqk~----~~~~~~----------------- 56 (168)
T COG4639 1 MRILVVLRGASGSGKSTFAKENFLQNYVLSL---DDLRLLLGVSASKENSQKN----DELVWD----------------- 56 (168)
T ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCCEECH---HHHHHHHHHCHHHHHCCCC----HHHHHH-----------------
T ss_conf 9448998668877642899971799534149---9999886202046650133----799999-----------------
Q ss_pred EEEEECCCHHHHHHHCCCCCCCCCC---C---CHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 0554432002333201232002431---0---001332105531011222133289999988630342078999999
Q gi|254781197|r 77 YYGYLKEDINNPMEHGYDILLILTH---Q---GLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDTPFNLDPDL 147 (185)
Q Consensus 77 ~YGt~~~~i~~~~~~g~~~il~id~---~---G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~d~~~~i~~rl 147 (185)
.........+.+|+..|++-.- + -...|-+.|+..++.|++..| .+.+.+|-..|.+.-.+++-.|+
T Consensus 57 ---~l~~~l~qrl~~Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp-~~~c~aRNk~~~Rqv~~~VI~r~ 129 (168)
T COG4639 57 ---ILYKQLEQRLRRGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTP-LELCLARNKLRERQVPEEVIPRM 129 (168)
T ss_pred ---HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEEEECC-HHHHHHHHHCCCHHCCHHHHHHH
T ss_conf ---99999999997397689975458999999999999983976899998188-99998774044001798999999
No 181
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.40 E-value=0.00026 Score=45.75 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=29.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH-HCCCE---E-EEEEECCCCCCCC
Q ss_conf 71899988999998999999985-18981---7-9986118889998
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL-NSEYL---V-MPVGVTTRRPRVD 43 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~-~~~~~---~-~~is~TTR~~R~~ 43 (185)
|.+..|+||||+||+||.+.+.. ..|.. . ..+.||..||-.-
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~R 71 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAER 71 (231)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCCCCC
T ss_conf 85799977888657889999874247787458985721476895448
No 182
>KOG3347 consensus
Probab=97.40 E-value=0.0018 Score=40.93 Aligned_cols=139 Identities=14% Similarity=0.213 Sum_probs=67.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC-----CCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEE
Q ss_conf 999889999989999999851898179986118889998323-----553000123542111027636445550486055
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQ-----YIDYRFISQSQFKGWKHTGLFIETTKVRDEYYG 79 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~-----g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YG 79 (185)
|+|+|..|+||+|++.+|.+.. ++... ...+-.+.++.. +-+-|+++++.
T Consensus 10 ILvtGTPG~GKstl~~~lae~~-~~~~i--~isd~vkEn~l~~gyDE~y~c~i~DEdk---------------------- 64 (176)
T KOG3347 10 ILVTGTPGTGKSTLAERLAEKT-GLEYI--EISDLVKENNLYEGYDEEYKCHILDEDK---------------------- 64 (176)
T ss_pred EEEECCCCCCCHHHHHHHHHHH-CCCEE--EHHHHHHHHCCHHCCCCCCCCCCCCHHH----------------------
T ss_conf 7986799988025999999973-98567--4556776611021023223675456789----------------------
Q ss_pred EECCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHH----HHH-----HHH
Q ss_conf 44320023332012320024310001332105531011222133289999988630342078999----999-----987
Q gi|254781197|r 80 YLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDTPFNLD----PDL-----FGK 150 (185)
Q Consensus 80 t~~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~d~~~~i~----~rl-----~~~ 150 (185)
..+.++..+.+|.. |+ |+.|---..... +..+ +-+.+|. ..|-.||.+||- ++..|. ..+ ..+
T Consensus 65 -v~D~Le~~m~~Gg~-IV--DyHgCd~Fperw-fdlV-vVLr~~~-s~LY~RL~sRgY-~e~Ki~eNiecEIfgv~~eea 136 (176)
T KOG3347 65 -VLDELEPLMIEGGN-IV--DYHGCDFFPERW-FDLV-VVLRTPN-SVLYDRLKSRGY-SEKKIKENIECEIFGVVLEEA 136 (176)
T ss_pred -HHHHHHHHHHCCCC-EE--EECCCCCCCHHH-EEEE-EEEECCC-HHHHHHHHHCCC-CHHHHHHHCCHHHHHHHHHHH
T ss_conf -99888898756884-88--600567650113-5579-9994684-599999997588-888876510158999999999
Q ss_pred HHCCCEEEEC----CCHHHHHHHHHHHHHH
Q ss_conf 6369889993----9789999999999999
Q gi|254781197|r 151 NHSYSFTIVN----NHLPTACRQVGFIREF 176 (185)
Q Consensus 151 ~~~fD~~IvN----ddle~a~~~l~~I~e~ 176 (185)
...|+--|+- +--+++...+..|..-
T Consensus 137 ~eSy~~~iV~eL~s~~~Eem~~ni~ri~~w 166 (176)
T KOG3347 137 RESYSPKIVVELQSETKEEMESNISRILNW 166 (176)
T ss_pred HHHCCCCCEEECCCCCHHHHHHHHHHHHHH
T ss_conf 987187421334767789999989999999
No 183
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.39 E-value=0.00015 Score=47.19 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=19.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
|.+++|+||||+||||+.+-+..
T Consensus 29 Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 29 GEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
T ss_conf 97999989998888999999968
No 184
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.38 E-value=0.00013 Score=47.53 Aligned_cols=43 Identities=23% Similarity=0.280 Sum_probs=30.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC
Q ss_conf 8999889999989999999851898179986118889998323
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQ 46 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~ 46 (185)
.++|+|++.||||||.+.|+.+.-...-..+.|||.+-.+-..
T Consensus 5 ~V~ivG~pN~GKSsL~N~L~~~~~a~vs~~~gtTr~~~~~~~~ 47 (168)
T cd04163 5 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYT 47 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEECCCEEEEE
T ss_conf 8999999999999999999589703323889826344236898
No 185
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.38 E-value=0.00025 Score=45.89 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=25.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 71899988999998999999985189817998611888
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRR 39 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~ 39 (185)
|.++.|+||||||||||.+-+..-.+--...|..--++
T Consensus 27 Ge~~~lvGpnGaGKSTLl~~i~Gl~~p~~G~I~~~G~~ 64 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGFVPPQHGSITLDGKP 64 (255)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCC
T ss_conf 98999999998469999999975998899718579964
No 186
>PRK06761 hypothetical protein; Provisional
Probab=97.37 E-value=0.00015 Score=47.16 Aligned_cols=59 Identities=14% Similarity=0.220 Sum_probs=36.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC-EEEEEEECCCCCCCCCCCC-CCCCC---CCHHHHHHHCCC
Q ss_conf 9718999889999989999999851898-1799861188899983235-53000---123542111027
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSEY-LVMPVGVTTRRPRVDEKQY-IDYRF---ISQSQFKGWKHT 64 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~~-~~~~is~TTR~~R~~E~~g-~dY~F---vs~e~F~~~i~~ 64 (185)
|+|+|+|=|-+||||||.++.|.+.... ..-+..|. +|+.|. .||.. .|+++|+.+..+
T Consensus 1 m~kLIiIEGlPGsGKSTta~~l~d~L~~~g~~v~~~~-----Egd~~hP~D~~~~A~~t~~e~~~ll~~ 64 (281)
T PRK06761 1 MTKLIIIEGLPGFGKSTTAHLLNDKLSQLKIEVELFV-----EGDLNHPADYDWVACFTKFEYDRLLSN 64 (281)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE-----ECCCCCCCHHHHHHCCCHHHHHHHHHH
T ss_conf 9617999668999801499999999986698538995-----078999611122210478889999885
No 187
>PRK12288 ribosome-associated GTPase; Reviewed
Probab=97.37 E-value=0.0001 Score=48.20 Aligned_cols=23 Identities=26% Similarity=0.635 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
+|+-|++||||||||||+|.|+.
T Consensus 207 ~ktsvf~GqSGVGKSSLiN~L~p 229 (344)
T PRK12288 207 GRISIFVGQSGVGKSSLINALLP 229 (344)
T ss_pred CCEEEEEECCCCCHHHHHHHCCC
T ss_conf 78599980687678888761075
No 188
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=97.37 E-value=7.2e-05 Score=49.04 Aligned_cols=90 Identities=17% Similarity=0.246 Sum_probs=58.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCC--CCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEEE
Q ss_conf 8999889999989999999851898179986118889998--32355300012354211102763644555048605544
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVD--EKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYL 81 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~--E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt~ 81 (185)
=|.|+|-..+|||||++.|+.+.-.+.-.++-|||-+=.. +.+|..|.||+-.-+.+..+-..-+| +|.+.
T Consensus 213 rIAIvGrPNvGKStL~N~llg~~r~ivs~~~GTTRDsI~~~~~~~~~~~~liDTAGiRrk~kv~~~iE-------~~s~~ 285 (474)
T PRK03003 213 RVALVGKPNVGKSSLLNKLAGEERSVVHDVAGTTVDPVDSLIELGGKVWRFVDTAGLRRKVGQASGHE-------FYASL 285 (474)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHH-------HHHHH
T ss_conf 79998089987889999985897567458998515440589999998999998987663553343145-------89999
Q ss_pred CCCHHHHHHHCCCCCCCCCCC
Q ss_conf 320023332012320024310
Q gi|254781197|r 82 KEDINNPMEHGYDILLILTHQ 102 (185)
Q Consensus 82 ~~~i~~~~~~g~~~il~id~~ 102 (185)
+ + .++++...+|+|.+|..
T Consensus 286 r-t-l~aI~~advvilviDa~ 304 (474)
T PRK03003 286 R-T-HAAIDAAEVAVVLIDAS 304 (474)
T ss_pred H-H-HHHHHHCCEEEEEEECC
T ss_conf 9-9-99987335579998546
No 189
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=97.37 E-value=0.00029 Score=45.50 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=25.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 718999889999989999999851898179986118
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTT 37 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TT 37 (185)
|.++.|+||||||||||++.+..-.+--...|.+--
T Consensus 32 GEi~~iiG~nGaGKSTLl~~i~G~~~p~~G~I~~~g 67 (258)
T PRK11701 32 GEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRM 67 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 979999888998899999998567888887399746
No 190
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.36 E-value=0.00027 Score=45.65 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=20.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+||||||||||++-+..-
T Consensus 35 GE~v~iiG~sGsGKSTLl~~i~Gl 58 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999999994099999999669
No 191
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.36 E-value=0.00023 Score=46.10 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+||||||||||.+-+..-
T Consensus 30 Ge~~~iiGpsGsGKSTLl~~i~Gl 53 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999995799999999759
No 192
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.36 E-value=0.00015 Score=47.13 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+|||||||||+.+-+..-
T Consensus 23 ge~~~iiGpSGsGKSTll~~i~GL 46 (214)
T cd03297 23 EEVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 979999999973599999999849
No 193
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=97.35 E-value=0.00027 Score=45.66 Aligned_cols=28 Identities=18% Similarity=0.430 Sum_probs=23.8
Q ss_pred CCCEEE-EECCCCCCHHHHHHHHHHHCCC
Q ss_conf 971899-9889999989999999851898
Q gi|254781197|r 1 MAHIFV-LIGASGVGETTIAKQVVLNSEY 28 (185)
Q Consensus 1 m~kiiv-i~GpSGsGK~tl~~~L~~~~~~ 28 (185)
||.+|| |=|||||||+|+++.|.++...
T Consensus 32 ~~~iIIAIDGPAGSGKSTVAk~lA~~LG~ 60 (863)
T PRK12269 32 MGTVIIALDGPAGSGKSSVCRLLASRLGA 60 (863)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 79889998689867889999999998299
No 194
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.34 E-value=0.00024 Score=46.00 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||||||||||++.|..-.
T Consensus 33 GE~vaivG~nGsGKSTL~k~l~Gl~ 57 (279)
T PRK13635 33 GEWVAIVGHNGSGKSTLAKLLNGLL 57 (279)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999965999999997288
No 195
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.34 E-value=0.00029 Score=45.53 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|.++.|+||+|||||||++-|+.-.+
T Consensus 27 G~i~~l~G~NGaGKSTLlkli~Gl~~ 52 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 97999988999879999999977858
No 196
>PRK13542 consensus
Probab=97.34 E-value=0.00032 Score=45.24 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=31.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCC
Q ss_conf 9718999889999989999999851898179986118889998
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVD 43 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~ 43 (185)
.|.++.|+||+|+|||||.+.|..-.+--...|.+-.++++.+
T Consensus 43 ~Gei~~liGpNGaGKTTLlk~l~Gll~p~~G~I~~~G~~i~~~ 85 (224)
T PRK13542 43 PGDLLQVMGPNGSGKTSLLRVLSGLMPPAEGDLYWRGRAVRAG 85 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCC
T ss_conf 9979999999999999999999579788852899999999879
No 197
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.34 E-value=0.00017 Score=46.90 Aligned_cols=24 Identities=42% Similarity=0.548 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.+++|+|||||||||+.+-+..-
T Consensus 27 Ge~~~ilGpSG~GKSTllr~i~gl 50 (242)
T cd03295 27 GEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999995699999999759
No 198
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.34 E-value=0.00032 Score=45.25 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=25.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 718999889999989999999851898179986118
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTT 37 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TT 37 (185)
|.++.|+||+|+|||||++-|..-.+--...|..-.
T Consensus 37 Ge~~~l~GpNGaGKTTLlr~l~Gl~~p~~G~I~~~g 72 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDG 72 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 989999999998799999999769778841999999
No 199
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.34 E-value=0.00019 Score=46.57 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||||||||||++.|....
T Consensus 33 Ge~~~ilGpnGsGKSTLl~~i~G~~ 57 (226)
T cd03234 33 GQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 8099999899960999999996789
No 200
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.34 E-value=0.00029 Score=45.48 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||||||||||++-+..-.
T Consensus 30 Ge~~~iiG~sGsGKTTll~~i~Gl~ 54 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999986999999996699
No 201
>KOG0058 consensus
Probab=97.33 E-value=0.00023 Score=46.13 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|++..++||||+||+|++..|..-++
T Consensus 494 Ge~vALVGPSGsGKSTiasLL~rfY~ 519 (716)
T KOG0058 494 GEVVALVGPSGSGKSTIASLLLRFYD 519 (716)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 97799988999888999999997368
No 202
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.33 E-value=0.00032 Score=45.25 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|.++.|+||+|||||||.+-|..-.+
T Consensus 26 Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 51 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 95999999999999999999966778
No 203
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.32 E-value=0.0003 Score=45.41 Aligned_cols=49 Identities=24% Similarity=0.270 Sum_probs=30.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEE-----EEECCCCCCCCCCCCCCCCCC
Q ss_conf 7189998899999899999998518981799-----861188899983235530001
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMP-----VGVTTRRPRVDEKQYIDYRFI 53 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~-----is~TTR~~R~~E~~g~dY~Fv 53 (185)
|.++.|+|||||||||+++-|..-.+--... ...++.|++. .++-|-|=
T Consensus 26 Gei~~iiGpnGaGKSTl~~~i~Gl~~p~~G~I~~~g~~i~~~~~~~---r~ig~v~Q 79 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER---RNIGMVFQ 79 (213)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHH---CCEEEEEC
T ss_conf 9899999999973999999997599989708999999988899778---78699906
No 204
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.32 E-value=0.00028 Score=45.63 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||||||||||++.|+.-.
T Consensus 26 Gei~~iiG~nGaGKSTLl~~i~Gl~ 50 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899998899998999999995685
No 205
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.32 E-value=0.00019 Score=46.60 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
|.++.|+||||||||||++.|..
T Consensus 32 Gei~aiiG~nGsGKSTL~~~i~G 54 (252)
T CHL00131 32 GEIHAIMGPNGSGKSTLSKVIAG 54 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHCC
T ss_conf 98999999999999999999727
No 206
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.31 E-value=0.00021 Score=46.37 Aligned_cols=24 Identities=17% Similarity=0.498 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+||||||||||++-|+..
T Consensus 27 Gei~~iiG~nGaGKSTLl~~i~G~ 50 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 979999999999999999998377
No 207
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.31 E-value=0.0002 Score=46.41 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
|.++.|+||||||||||++.|..
T Consensus 27 Ge~~aliG~sGsGKSTLl~~l~g 49 (248)
T PRK11264 27 GEVVAIIGPSGSGKTTLLRCINL 49 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
T ss_conf 98999999999809999999975
No 208
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=97.31 E-value=0.00024 Score=45.98 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 899988999998999999985189
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
||+|-|+=|||||||++.|.+..+
T Consensus 1 iI~IEGnIG~GKTTl~~~La~~l~ 24 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLG 24 (219)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 989967856799999999999859
No 209
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.31 E-value=0.0002 Score=46.49 Aligned_cols=25 Identities=12% Similarity=0.422 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||||||||||++.++...
T Consensus 31 Ge~~~IvG~sGsGKSTLl~~i~G~~ 55 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 9899999999985899999981895
No 210
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.30 E-value=0.00034 Score=45.12 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|.++.|+||||||||||++.++.-.+
T Consensus 25 Ge~~~liG~nGsGKTTLl~~i~G~~~ 50 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 97999998999889999999957989
No 211
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.30 E-value=0.0002 Score=46.48 Aligned_cols=26 Identities=31% Similarity=0.485 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|.++.|+||+|||||||++.++.-.+
T Consensus 26 Gei~~liG~nGaGKSTLl~~i~Gl~~ 51 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 98999999999859999999977988
No 212
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.30 E-value=0.00013 Score=47.63 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=35.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC--CCCCCCCCH
Q ss_conf 999889999989999999851898179986118889998323--553000123
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQ--YIDYRFISQ 55 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~--g~dY~Fvs~ 55 (185)
++|+|.+.+|||||+++|+.+.....-..+.|||.+-.+..+ |..|.|++-
T Consensus 5 V~ivG~pN~GKSTL~N~l~g~~~~~vs~~pgtTr~~~~~~~~~~~~~~~~vDt 57 (174)
T cd01895 5 IAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDT 57 (174)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCEEECCCCCCEEECCEEEEEECCEEEEEEEC
T ss_conf 99998999989999999838984443499991573328999999988999857
No 213
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.29 E-value=0.00029 Score=45.49 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|.++.|+|||||||||+++.|..-.+
T Consensus 33 Ge~~aiiG~sGsGKSTL~~~l~Gl~~ 58 (277)
T PRK13642 33 GEWVSIIGQNGSGKSTTARLIDGLFE 58 (277)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 98999999999689999999963899
No 214
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.29 E-value=0.00026 Score=45.79 Aligned_cols=48 Identities=10% Similarity=0.217 Sum_probs=30.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 71899988999998999999985189817998611888999832355300012354211
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKG 60 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~ 60 (185)
|..+.|+||||||||||++.|+.-.+ ....| -+||++..-++.+.+.+
T Consensus 30 Ge~vaIvG~sGsGKSTLl~lL~gl~~-~~G~I----------~idg~~i~~~~~~~~r~ 77 (275)
T cd03289 30 GQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDI----------QIDGVSWNSVPLQKWRK 77 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC-CCCEE----------EECCEECCCCCHHHHHH
T ss_conf 99999999999979999999960357-89539----------99988067368999976
No 215
>TIGR00017 cmk cytidylate kinase; InterPro: IPR003136 This family consists of cytidylate kinase (2.7.4.14 from EC), which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors .; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=97.29 E-value=0.00027 Score=45.67 Aligned_cols=60 Identities=22% Similarity=0.307 Sum_probs=39.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEE-------EEEECC-CCCCCCCCCCCCCCCCCHHHHHHHCCCCE
Q ss_conf 9718999889999989999999851898179-------986118-88999832355300012354211102763
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSEYLVM-------PVGVTT-RRPRVDEKQYIDYRFISQSQFKGWKHTGL 66 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~~~~~-------~is~TT-R~~R~~E~~g~dY~Fvs~e~F~~~i~~g~ 66 (185)
|.-+|.|=|||||||+|+++.+.++.....+ ++.|-- |. -.+ ..| +.+++.+-+++..-.
T Consensus 1 ~~~~IAIDGPs~aGKStvak~~A~~L~y~yldsG~mYR~~a~~~qrs-L~~---~~d--~~~E~~L~~L~~~~d 68 (223)
T TIGR00017 1 MKMIIAIDGPSGAGKSTVAKAVAEKLGYKYLDSGAMYRALALAAQRS-LQN---RVD--LTDEDALLELISQLD 68 (223)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHH-HHC---CCC--CCCHHHHHHHHHHCC
T ss_conf 98637623776465578999999862950214432899999999988-740---688--568488999986326
No 216
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.29 E-value=0.0002 Score=46.49 Aligned_cols=13 Identities=46% Similarity=1.025 Sum_probs=4.4
Q ss_pred EEEEECCCCCCHH
Q ss_conf 8999889999989
Q gi|254781197|r 4 IFVLIGASGVGET 16 (185)
Q Consensus 4 iivi~GpSGsGK~ 16 (185)
++.++||+|||||
T Consensus 196 vi~lvGPTGVGKT 208 (282)
T TIGR03499 196 VIALVGPTGVGKT 208 (282)
T ss_pred EEEEECCCCCCHH
T ss_conf 7999778887578
No 217
>TIGR01192 chvA glucan exporter ATP-binding protein; InterPro: IPR005896 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. In general, this protein is in some ways implicated in osmo-regulation and is suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bacterial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmo-adaptaion are related. ; GO: 0005215 transporter activity, 0006810 transport.
Probab=97.28 E-value=0.00034 Score=45.09 Aligned_cols=73 Identities=16% Similarity=0.245 Sum_probs=47.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH-HCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEE
Q ss_conf 71899988999998999999985-18981799861188899983235530001235421110276364455504860554
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL-NSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGY 80 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~-~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt 80 (185)
|+-+.|+||.|+||+||+|.|-. .+|.... |+ +||+|---|+++...+-++ +++- -=|.
T Consensus 361 G~TvAIVGPTGAGKTTLiNLLQRVydP~~G~-I~----------IDG~~I~~v~r~SLR~s~A--------TVFQ-DAGL 420 (592)
T TIGR01192 361 GQTVAIVGPTGAGKTTLINLLQRVYDPKVGQ-IL----------IDGIDINTVTRESLRKSIA--------TVFQ-DAGL 420 (592)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCE-EE----------ECCEEHHHHCHHHHHHHHH--------HHHH-HCCC
T ss_conf 7568987789971789988775310698654-88----------7242400103477887887--------7873-1020
Q ss_pred ECCCHHHHHHHCCC
Q ss_conf 43200233320123
Q gi|254781197|r 81 LKEDINNPMEHGYD 94 (185)
Q Consensus 81 ~~~~i~~~~~~g~~ 94 (185)
.-.+|.+.+.-|+.
T Consensus 421 ~~R~Ir~NI~lG~~ 434 (592)
T TIGR01192 421 LNRSIRENIRLGRE 434 (592)
T ss_pred CCCCHHHHHCCCCC
T ss_conf 01312332003777
No 218
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.28 E-value=0.0003 Score=45.44 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=25.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 7189998899999899999998518981799861
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGV 35 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~ 35 (185)
|.++.|+||+||||||+++-++.-.+.....|..
T Consensus 25 Ge~~~liGpNGaGKSTllk~i~Gl~~p~~G~i~i 58 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 9899999999986999999997687889758999
No 219
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.28 E-value=0.00034 Score=45.15 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|..+.|+||||||||||++.|+.-.
T Consensus 28 Ge~i~ivG~sGsGKSTLl~ll~gl~ 52 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999983999999997677
No 220
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.28 E-value=0.00019 Score=46.58 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||||||||||++.|..-.
T Consensus 20 Ge~vaiiG~sGsGKSTLl~~l~GLl 44 (276)
T PRK13634 20 GSYVAIIGHTGSGKSTLLQHLNGLL 44 (276)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999969999999997499
No 221
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.28 E-value=0.00025 Score=45.91 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||||||||||++.|....
T Consensus 33 Gei~~llG~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8499999899998899999983787
No 222
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.28 E-value=0.0004 Score=44.69 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
|.++.|+||||||||||++-|..
T Consensus 33 Ge~~~llGpnGaGKSTLl~~l~g 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CEEEEEECCCCCCHHHHHHHHHC
T ss_conf 83999999999988999999837
No 223
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.28 E-value=0.00022 Score=46.23 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||+|||||||++-|....
T Consensus 25 GEiv~liGpNGaGKSTLlk~l~Gll 49 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999799976999999997787
No 224
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.28 E-value=0.00021 Score=46.28 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+||||||||||++-|..-
T Consensus 29 Ge~~~llGpsG~GKSTllr~i~Gl 52 (369)
T PRK11000 29 GEFVVFVGPSGCGKSTLLRMIAGL 52 (369)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999973699999999779
No 225
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.27 E-value=0.00033 Score=45.20 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||||||||||++-+..-.
T Consensus 27 Ge~~~liG~nGsGKSTll~~i~Gl~ 51 (240)
T PRK09493 27 GEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999980999999996389
No 226
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.27 E-value=0.00034 Score=45.09 Aligned_cols=25 Identities=16% Similarity=0.476 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||||||||||++.|..-.
T Consensus 33 Ge~~aiiG~nGsGKSTLl~~l~GLl 57 (286)
T PRK13646 33 GKYYAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999981999999997078
No 227
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.27 E-value=0.00034 Score=45.09 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=21.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 999889999989999999851898179
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEYLVM 31 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~~~~ 31 (185)
|+|+|+.||||||+.+.|.+.. ++.+
T Consensus 2 I~LiG~~G~GKstigk~la~~l-~~~f 27 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL-GLPF 27 (154)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-CCCE
T ss_conf 8998899998899999999997-9897
No 228
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.27 E-value=0.00027 Score=45.73 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|..+.|+||||||||||++.|+...
T Consensus 28 Ge~~aivG~sGsGKSTLl~~l~G~~ 52 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHCC
T ss_conf 9999999999875999999998617
No 229
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.26 E-value=0.00038 Score=44.84 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=20.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
|.++.|+||||||||||.+.+..
T Consensus 31 Gei~~iiG~sGsGKSTLl~~i~g 53 (257)
T PRK10619 31 GDVISIIGSSGSGKSTFLRCINF 53 (257)
T ss_pred CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 97999998999819999999965
No 230
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.26 E-value=0.0002 Score=46.45 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.+++|+||||+||||+.+-+..-
T Consensus 32 Ge~~~llGpSG~GKTTlLr~iaGl 55 (351)
T PRK11432 32 GTMVTLLGPSGCGKTTVLRLVAGL 55 (351)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999964999999999769
No 231
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.25 E-value=0.00082 Score=42.88 Aligned_cols=50 Identities=24% Similarity=0.249 Sum_probs=34.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC--CE-EEEEEECCCCCCCCCCCCCCCC
Q ss_conf 971899988999998999999985189--81-7998611888999832355300
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSE--YL-VMPVGVTTRRPRVDEKQYIDYR 51 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~--~~-~~~is~TTR~~R~~E~~g~dY~ 51 (185)
|-+|+-|+|+|+||||||+.+|+.... +. ...|-|+-..++.. ..|+|-|
T Consensus 1 m~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~~~~D-~~GkDs~ 53 (161)
T COG1763 1 MMKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHHDFDLD-KPGKDTY 53 (161)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC-CCCCCCC
T ss_conf 9728999962799734289999999975793799998658777778-8987661
No 232
>PRK13976 thymidylate kinase; Provisional
Probab=97.25 E-value=0.00043 Score=44.52 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=28.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEE-EEEEECCCCCCCCC
Q ss_conf 899988999998999999985189817-99861188899983
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLV-MPVGVTTRRPRVDE 44 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~-~~is~TTR~~R~~E 44 (185)
+|++=|.-||||||.++.|.+...... ......||+|....
T Consensus 2 fIvfEGiDGsGKsTq~~~L~~~L~~~~~~~~~~~trEPggt~ 43 (202)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLSQIYGENNVVLTREPGGTS 43 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf 899989999989999999999998606998689837999982
No 233
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.25 E-value=0.00039 Score=44.76 Aligned_cols=25 Identities=16% Similarity=0.473 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||+|||||||++.|....
T Consensus 28 Gei~~liGpNGaGKSTLlk~i~Gl~ 52 (257)
T PRK13548 28 GEVVAILGPNGAGKSTLLRALSGEL 52 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899999999987999999985675
No 234
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.25 E-value=0.00027 Score=45.70 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+||||||||||++.|..-
T Consensus 52 Ge~vaIIG~nGsGKSTL~~~l~Gl 75 (320)
T PRK13631 52 NKIYFIIGNSGSGKSTLVTHFNGL 75 (320)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999949998499999999758
No 235
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.24 E-value=0.00025 Score=45.88 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
|.+++|+||||+|||||.+-+..
T Consensus 31 GE~~~llGpSG~GKTTlLr~iaG 53 (362)
T TIGR03258 31 GELLALIGKSGCGKTTLLRAIAG 53 (362)
T ss_pred CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 98999999997459999999977
No 236
>PRK13544 consensus
Probab=97.24 E-value=0.0004 Score=44.70 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|.++.|+||+|||||||.+.|..-.+
T Consensus 27 Gei~~l~G~NGsGKSTLl~~i~Gl~~ 52 (208)
T PRK13544 27 NSLTLVIGNNGSGKTSLLRLLAGLIP 52 (208)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 94999999999989999999958806
No 237
>PRK10908 cell division protein FtsE; Provisional
Probab=97.24 E-value=0.0004 Score=44.68 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+||||||||||++.+..-
T Consensus 28 Ge~~~liG~nGsGKSTLl~~i~Gl 51 (222)
T PRK10908 28 GEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999980799999999659
No 238
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.24 E-value=0.00028 Score=45.65 Aligned_cols=23 Identities=30% Similarity=0.660 Sum_probs=20.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
|.++.|+||||||||||++-|..
T Consensus 28 Ge~~~iiG~nGaGKSTLl~~l~g 50 (242)
T PRK11124 28 GETLVLLGPSGAGKSSLLRVLNL 50 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
T ss_conf 98999999999719999999965
No 239
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.24 E-value=0.00071 Score=43.23 Aligned_cols=49 Identities=31% Similarity=0.446 Sum_probs=30.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC--CCCCCCCCCCHHHHHHHC
Q ss_conf 7189998899999899999998518981799861188899983--235530001235421110
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDE--KQYIDYRFISQSQFKGWK 62 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E--~~g~dY~Fvs~e~F~~~i 62 (185)
|.++.|+||||||||||++-+..-. +|-.|+ .+|+|-.-.+..+...+.
T Consensus 31 Gei~giIG~SGaGKSTLlr~i~gL~------------~ptsG~I~~~G~dl~~l~~~~l~~~R 81 (343)
T PRK11153 31 GQIYGVIGASGAGKSTLIRCVNLLE------------RPTSGSVIVDGQDLTTLSESELTKAR 81 (343)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEECCEECCCCCHHHHHHHH
T ss_conf 9899999999986999999996599------------99963999999999879988999986
No 240
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.24 E-value=9.9e-05 Score=48.25 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=37.0
Q ss_pred EECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCC--CCCCCCCCCHHHH
Q ss_conf 988999998999999985189817998611888999832--3553000123542
Q gi|254781197|r 7 LIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEK--QYIDYRFISQSQF 58 (185)
Q Consensus 7 i~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~--~g~dY~Fvs~e~F 58 (185)
|+|++.||||||+++|+.......-..+.|||.+-.+.. +|..+.|++-.-|
T Consensus 2 ivG~pN~GKSsL~N~l~~~~~~ivs~~~gtTr~~~~~~~~~~~~~~~lvDTpG~ 55 (157)
T cd01894 2 IVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGI 55 (157)
T ss_pred CCCCCCCCHHHHHHHHHCCCCEEEECCCCCEEEEEEEEEEECCEEEEEEECCCC
T ss_conf 048999889999999958875354079993566789999999988999857875
No 241
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.24 E-value=0.00036 Score=44.94 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||||||||||++.|..-.
T Consensus 36 Ge~vaivG~nGsGKSTLlk~l~Gll 60 (273)
T PRK13632 36 GEYVAILGHNGSGKSTISKILTGLL 60 (273)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999986999999997387
No 242
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.23 E-value=0.00042 Score=44.55 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||||||||||++.|..-.
T Consensus 37 Ge~~~liG~NGaGKSTLl~~l~gl~ 61 (265)
T PRK10575 37 GKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999980999999995688
No 243
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.23 E-value=0.00028 Score=45.62 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|.++.|+||||||||||.+.|....+
T Consensus 27 Ge~~aliG~nGaGKSTLl~~i~G~l~ 52 (273)
T PRK13547 27 GRVTALLGRNGAGKSTLLKVLAGELT 52 (273)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 98999999999769999999956788
No 244
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.23 E-value=0.00035 Score=45.05 Aligned_cols=50 Identities=22% Similarity=0.183 Sum_probs=33.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC--CEEE-EEEECCCCCCCCCCCCCCCC
Q ss_conf 971899988999998999999985189--8179-98611888999832355300
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSE--YLVM-PVGVTTRRPRVDEKQYIDYR 51 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~--~~~~-~is~TTR~~R~~E~~g~dY~ 51 (185)
|--||-|+|.||||||||+.+|+.... ++.. +|-|+-..--. +..|+|-|
T Consensus 1 m~Pii~ivG~s~SGKTTLi~kli~~l~~~G~rV~~IKH~~H~f~~-D~pGkDS~ 53 (170)
T PRK10751 1 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDV-DKPGKDSY 53 (170)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-CCCCCCCH
T ss_conf 987799994699999999999999999879849999457778889-99984109
No 245
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.23 E-value=0.00026 Score=45.83 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
|.++.|+|||||||||+++-+..
T Consensus 30 Ge~~~llGpsG~GKTTllr~iaG 52 (358)
T PRK11650 30 GEFIVLVGPSGCGKSTLLRMVAG 52 (358)
T ss_pred CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 98999999986369999999976
No 246
>PRK10744 phosphate transporter subunit; Provisional
Probab=97.23 E-value=0.0003 Score=45.46 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
|.++.|+||||||||||++-|..
T Consensus 36 Ge~~~liG~nGaGKSTLlk~i~g 58 (257)
T PRK10744 36 NQVTAFIGPSGCGKSTLLRTFNK 58 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 98999999999819999999987
No 247
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.22 E-value=0.00028 Score=45.62 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=20.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+||||||||||.+-|..-
T Consensus 43 GE~~~llGpSGsGKSTLlr~iaGl 66 (378)
T PRK09452 43 GEFLTLLGPSGCGKTTVLRLIAGF 66 (378)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999989997699999999769
No 248
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.21 E-value=0.0003 Score=45.42 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+||||||||||++-|...
T Consensus 26 GEi~gLiGpNGaGKSTLlk~i~Gl 49 (255)
T cd03236 26 GQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 809999899997099999999679
No 249
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.21 E-value=0.00052 Score=44.01 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=33.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 7189998899999899999998518981799861188899983235530001235421110
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK 62 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i 62 (185)
|+.+.|+|+||||||||+|-|..-+.--...|. .||.|-.=++...+.+.+
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~----------~dg~dl~~i~~~~lR~~i 549 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL----------LDGVDLNDIDLASLRRQV 549 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE----------ECCEEHHHCCHHHHHHHE
T ss_conf 988999879999889999998367888885599----------998727866999998654
No 250
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.21 E-value=0.00027 Score=45.68 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+||||||||||++-|..-
T Consensus 38 GEiv~LiG~nGaGKSTLlr~i~Gl 61 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999989988899999999658
No 251
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.21 E-value=0.00051 Score=44.07 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||+|||||||++-|+.-.
T Consensus 27 Ge~~~l~G~NGaGKSTLl~~l~Gl~ 51 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899999999985999999997688
No 252
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.21 E-value=0.00031 Score=45.35 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+||||||||||++.|..-
T Consensus 30 GE~~~iiGpNGaGKSTLlk~i~Gl 53 (262)
T PRK09984 30 GEMVALLGPSGSGKSTLLRHLSGL 53 (262)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999989996099999999756
No 253
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.20 E-value=0.00031 Score=45.36 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=20.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+||||||||||++.+..-
T Consensus 37 GE~v~iiG~nGsGKSTL~r~l~gl 60 (281)
T PRK13633 37 GEFLVILGHNGSGKSTIAKHMNAL 60 (281)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999998499999999758
No 254
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.19 E-value=0.00031 Score=45.34 Aligned_cols=23 Identities=30% Similarity=0.644 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
|.++.|+||+|||||||.+.|+.
T Consensus 26 Gei~~iiGpnGaGKSTLl~~i~G 48 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMG 48 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHCC
T ss_conf 98999996899999999999707
No 255
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.19 E-value=0.00069 Score=43.31 Aligned_cols=50 Identities=22% Similarity=0.356 Sum_probs=35.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC--CCCCCCCCCCHHHHHHHCC
Q ss_conf 7189998899999899999998518981799861188899983--2355300012354211102
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDE--KQYIDYRFISQSQFKGWKH 63 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E--~~g~dY~Fvs~e~F~~~i~ 63 (185)
|++..|+||||+|||||.+.+.... +|..|| ++|.|+-=.|+++-.++.+
T Consensus 34 Gei~~iiGgSGsGKStlLr~I~Gll------------~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 34 GEILAILGGSGSGKSTLLRLILGLL------------RPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEECCCCHHCCCHHHHHHHHH
T ss_conf 8189998898868999999985657------------898875998476411049889999984
No 256
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.19 E-value=0.00034 Score=45.12 Aligned_cols=57 Identities=23% Similarity=0.327 Sum_probs=34.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH-CCC---EEEE-EEECCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 718999889999989999999851-898---1799-86118889998323553000123542111
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN-SEY---LVMP-VGVTTRRPRVDEKQYIDYRFISQSQFKGW 61 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~-~~~---~~~~-is~TTR~~R~~E~~g~dY~Fvs~e~F~~~ 61 (185)
|-++.|.|||||||||+.+-+..- .|. +.+- ...|.-||..- ++.+.|=+-.-|-.|
T Consensus 31 Gef~tlLGPSGcGKTTlLR~IAGfe~p~~G~I~l~g~~i~~lpp~kR---~ig~VFQ~YALFPHm 92 (352)
T COG3842 31 GEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKR---PIGMVFQSYALFPHM 92 (352)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHC---CCCEEECCCCCCCCC
T ss_conf 86899989988888999999967778888659999999888994226---523260676668888
No 257
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.18 E-value=0.00039 Score=44.78 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 718999889999989999999851898
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEY 28 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~ 28 (185)
|.++.|+||||||||||++.++.....
T Consensus 21 Ge~~~iiG~nGsGKSTLl~~~~~~~~~ 47 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGK 47 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 989999999999899999988876103
No 258
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.18 E-value=0.00033 Score=45.18 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=20.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
|.++.|+||||||||||++.|..
T Consensus 35 Gei~~ilGpnGaGKSTLl~~l~G 57 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred CEEEEEECCCCCHHHHHHHHHHC
T ss_conf 81999998999519999999857
No 259
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.18 E-value=0.00028 Score=45.58 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||||||||||++.|..-.
T Consensus 33 GE~v~iiG~nGsGKSTLl~~l~GLl 57 (287)
T PRK13637 33 GEFVALIGHTGSGKSTLIQHLNGLL 57 (287)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999939999999997399
No 260
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=97.17 E-value=0.00031 Score=45.37 Aligned_cols=25 Identities=36% Similarity=0.380 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||+|||||||++.|..-.
T Consensus 29 Gei~~liGpNGaGKSTLl~~i~Gl~ 53 (241)
T PRK10895 29 GEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9799998899986999999996788
No 261
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.17 E-value=0.00033 Score=45.21 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
|.+++|.||||+||||+.+.+..
T Consensus 30 Ge~~~llGpSG~GKtTlLr~iaG 52 (353)
T TIGR03265 30 GEFVCLLGPSGCGKTTLLRIIAG 52 (353)
T ss_pred CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 99999999995359999999976
No 262
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.17 E-value=0.00055 Score=43.89 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||||||||||++.|..-.
T Consensus 30 GE~vaivG~nGsGKSTL~~~l~Gll 54 (276)
T PRK13650 30 GEWLSIIGHNGSGKSTTVRLIDGLL 54 (276)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999987999999997388
No 263
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.17 E-value=0.00033 Score=45.20 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
|.++.|+||||||||||++.|..
T Consensus 34 Ge~vaiiG~nGsGKSTL~~~l~G 56 (283)
T PRK13640 34 GSWTALIGHNGSGKSTISKLING 56 (283)
T ss_pred CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 99999999999879999999964
No 264
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.17 E-value=0.00057 Score=43.78 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+||+|||||||++.|..-
T Consensus 31 Ge~~aiiG~NGsGKSTLl~~l~Gl 54 (273)
T PRK13647 31 GSKTAILGPNGAGKSTLLLHLNGI 54 (273)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999997599999999669
No 265
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=97.16 E-value=0.00054 Score=43.92 Aligned_cols=22 Identities=32% Similarity=0.661 Sum_probs=10.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 7189998899999899999998
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVV 23 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~ 23 (185)
|+...|+|||||||+||++.|.
T Consensus 411 G~t~AlVG~SGsGKSTii~LL~ 432 (1467)
T PTZ00265 411 GKTYAFVGESGCGKSTILKLIE 432 (1467)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 9779986688875667999996
No 266
>KOG2004 consensus
Probab=97.16 E-value=0.00042 Score=44.60 Aligned_cols=45 Identities=31% Similarity=0.487 Sum_probs=32.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC--CEEEEEEECCCCCCCCCCCCCC
Q ss_conf 71899988999998999999985189--8179986118889998323553
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE--YLVMPVGVTTRRPRVDEKQYID 49 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~--~~~~~is~TTR~~R~~E~~g~d 49 (185)
|||+|++||.|+||++|.+.+..-.. .|.+++---| ..-|+-|.-
T Consensus 438 GkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~t---DvAeIkGHR 484 (906)
T KOG2004 438 GKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMT---DVAEIKGHR 484 (906)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCC---CHHHHCCCC
T ss_conf 83799868998773218999999848746998536634---277642542
No 267
>TIGR00174 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) .; GO: 0004811 tRNA isopentenyltransferase activity, 0005524 ATP binding, 0008033 tRNA processing.
Probab=97.16 E-value=0.00021 Score=46.31 Aligned_cols=51 Identities=22% Similarity=0.465 Sum_probs=37.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC-EEEE--------EEECCCCCCCCCCCCCCCCCCC
Q ss_conf 8999889999989999999851898-1799--------8611888999832355300012
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEY-LVMP--------VGVTTRRPRVDEKQYIDYRFIS 54 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~-~~~~--------is~TTR~~R~~E~~g~dY~Fvs 54 (185)
+|||+||.|||||.|+=.|.++.+- +--+ +.=-|=+|-.+|..++-+|-|+
T Consensus 1 vi~i~GpTAvGKs~L~i~La~~lnaEiI~~DS~qiYK~~dIgtaKp~~~e~~~ipH~l~D 60 (307)
T TIGR00174 1 VIVIMGPTAVGKSNLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQERKGIPHHLID 60 (307)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCEEEEECCCHHHHCCCCCCCCCCCHHHHCCCCCEEEE
T ss_conf 967740885547789999887689578743502322378753578896875349815851
No 268
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.16 E-value=0.00057 Score=43.79 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||+|+|||||.+.|..-.
T Consensus 28 Gei~~liGpNGaGKSTLlk~i~Gl~ 52 (255)
T PRK11231 28 GKITALIGPNGCGKSTLLKCFARLL 52 (255)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9799999999981999999997598
No 269
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.15 E-value=0.00071 Score=43.24 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=30.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 718999889999989999999851898179986118889998323553000123542
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQF 58 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F 58 (185)
|.++.|+||+||||||+++-|..-.+--...|. .+|++..|.+..+.
T Consensus 26 Gei~~lvG~nGaGKSTl~~~i~Gl~~p~~G~i~----------i~G~~i~~~~~~~~ 72 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKPDSGEIL----------VDGKEVSFASPRDA 72 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE----------ECCEECCCCCHHHH
T ss_conf 989999988998999999999577689857899----------99999999999999
No 270
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.15 E-value=0.0004 Score=44.71 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
|.++.|+||||||||||++.|..
T Consensus 33 GE~v~IiG~nGsGKSTL~k~l~G 55 (304)
T PRK13651 33 GEFIAIIGQTGSGKTTFIEHLNA 55 (304)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
T ss_conf 98999987999859999999966
No 271
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.14 E-value=0.0004 Score=44.72 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+||||||||||++.|..-
T Consensus 28 Ge~vaiiG~nGsGKSTL~~~l~Gl 51 (274)
T PRK13644 28 GEYIGIIGKNGSGKSTLALHLNGL 51 (274)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 999999999998099999999706
No 272
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.14 E-value=0.00042 Score=44.60 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+||||+|||||++-++.-
T Consensus 27 Gei~~iiG~nGaGKSTLlk~i~Gl 50 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 979999889999899999999646
No 273
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.14 E-value=0.00055 Score=43.89 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||||||||||++.|..-.
T Consensus 33 Ge~~~iiG~nGsGKSTLl~~l~Gll 57 (286)
T PRK13641 33 GSFVALIGHTGSGKSTLMQHFNALL 57 (286)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999999839999999996598
No 274
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.14 E-value=0.00063 Score=43.53 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||+||||||+++.+..-.
T Consensus 30 Ge~~aliG~NGaGKSTLl~~i~Gll 54 (277)
T PRK13652 30 KQRIAVIGPNGAGKSTLFKHFNGIL 54 (277)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999947999999996699
No 275
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.14 E-value=0.00036 Score=44.94 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+||||||||||++.+..-
T Consensus 37 Ge~~aIiG~nGsGKSTL~~~l~Gl 60 (289)
T PRK13645 37 NKVTCVIGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999995799999999659
No 276
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.14 E-value=0.00081 Score=42.90 Aligned_cols=23 Identities=26% Similarity=0.661 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
|.++.|+|+||||||||++.|..
T Consensus 41 GE~lgiVGeSGsGKSTL~~~l~g 63 (327)
T PRK11308 41 GKTLAVVGESGCGKSTLARLLTM 63 (327)
T ss_pred CCEEEEECCCCHHHHHHHHHHHC
T ss_conf 99999999983199999999956
No 277
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=97.14 E-value=0.00042 Score=44.57 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=19.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
+.|..|+||+|||||||++.|..
T Consensus 22 ~~itaivG~NGaGKSTLl~~i~~ 44 (204)
T cd03240 22 SPLTLIVGQNGAGKTTIIEALKY 44 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 88899998999999999999863
No 278
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=97.13 E-value=0.00039 Score=44.77 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=22.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|.++.|+|||||||||+++.++.-.+
T Consensus 29 Ge~~aiiG~SGsGKStl~k~llgll~ 54 (254)
T PRK10418 29 GRVLALVGGSGSGKSLTCAAALGILP 54 (254)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99999999998789999999957998
No 279
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.12 E-value=0.00012 Score=47.65 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||.|+||||+++-|+.-.
T Consensus 26 Gei~gllG~NGaGKTTll~~i~Gl~ 50 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9599999899984999999996002
No 280
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=97.12 E-value=0.00048 Score=44.24 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.+|.|+|.||||||||++.|....
T Consensus 2 G~viW~TGLsGsGKTTlA~~l~~~L 26 (157)
T pfam01583 2 GCTVWFTGLSGSGKSTIANALERKL 26 (157)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8899988989999999999999999
No 281
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.12 E-value=0.00037 Score=44.89 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=20.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
++++.++||+||||||.+-+|...
T Consensus 210 ~~vvalVGPTGVGKTTTiAKLAA~ 233 (412)
T PRK05703 210 GGVVALVGPTGVGKTTTLAKLAAR 233 (412)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 736999888887567699999999
No 282
>pfam08433 KTI12 Chromatin associated protein KTI12. This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II. The Elongator complex has histone acetyltransferase activity.
Probab=97.11 E-value=0.00093 Score=42.56 Aligned_cols=113 Identities=16% Similarity=0.198 Sum_probs=59.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEEECC
Q ss_conf 89998899999899999998518981799861188899983235530001235421110276364455504860554432
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLKE 83 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt~~~ 83 (185)
++||+|..+|||||.++.|.+....- |.+-+-|+++.+.- ....|- ....-...-|..++
T Consensus 1 Livl~G~P~SGKSt~A~~L~~~l~~~-----------------~~~v~vi~d~~~~~--~~~~y~-~s~~Ek~~R~~l~s 60 (266)
T pfam08433 1 LIILTGLPSSGKSTRAKELAKYLEEK-----------------GYDVIVISDESLGI--ESDDYK-DSKKEKFLRGSLRS 60 (266)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHC-----------------CCEEEEECCCCCCC--CCCCCC-CCHHHHHHHHHHHH
T ss_conf 97985799996889999999999975-----------------99389978001267--531000-10478999999999
Q ss_pred CHHHHHHHCCCCCCCCCCC---CHHH----HHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 0023332012320024310---0013----32105531011222133289999988630342
Q gi|254781197|r 84 DINNPMEHGYDILLILTHQ---GLAP----LKKLYEDQVTSIFIAPPSEAELIQRRIKRRED 138 (185)
Q Consensus 84 ~i~~~~~~g~~~il~id~~---G~~~----lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~d 138 (185)
++...+..+.++|+| +.+ |.+. +-+......+.||+.+| .+...++-..|+..
T Consensus 61 ~v~r~Ls~~~iVIlD-~~NYiKG~RYEL~C~Ak~~~t~~c~v~~~~p-~e~~~~~N~~r~~~ 120 (266)
T pfam08433 61 AVKRDLSKNTIVIVD-SLNYIKGFRYELYCIAKEAKTTYCVVYCKAP-LDTCLKWNEERGEP 120 (266)
T ss_pred HHHHHHCCCCEEEEC-CCCCHHHHHHHHHHHHHHCCCCEEEEEECCC-HHHHHHHHCCCCCC
T ss_conf 998751668889954-8740456899999999863888489996899-89999862147777
No 283
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=97.11 E-value=0.00038 Score=44.80 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=33.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC--CCCCCCCCCCHHHHHHHC
Q ss_conf 7189998899999899999998518981799861188899983--235530001235421110
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDE--KQYIDYRFISQSQFKGWK 62 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E--~~g~dY~Fvs~e~F~~~i 62 (185)
|+=+-|+||||+|||||..-|..-. ||+.|| .||++-+=+++++-.+.+
T Consensus 387 G~r~Ai~G~SG~GKsTLL~~L~G~l------------~P~~G~vtl~G~~~~~~~~~evrr~v 437 (566)
T TIGR02868 387 GERVAILGPSGSGKSTLLATLAGLL------------DPLQGEVTLDGVPVSSLSEDEVRRRV 437 (566)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHC------------CCCCCCEEECCCCHHHCCCCHHEHHE
T ss_conf 8608986688765789999998402------------89999178777324325731100000
No 284
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.10 E-value=0.00079 Score=42.99 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||+|||||||++-++...
T Consensus 31 Gei~~liG~NGaGKSTLl~~i~G~~ 55 (237)
T PRK11614 31 GEIVTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9799998799975999999996799
No 285
>TIGR00630 uvra excinuclease ABC, A subunit; InterPro: IPR004602 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products . The UvrC protein contain 4 conserved regions: a central region which interact with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0009380 excinuclease repair complex.
Probab=97.10 E-value=0.00027 Score=45.70 Aligned_cols=18 Identities=33% Similarity=0.704 Sum_probs=16.6
Q ss_pred CCEEEEECCCCCCHHHHH
Q ss_conf 718999889999989999
Q gi|254781197|r 2 AHIFVLIGASGVGETTIA 19 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~ 19 (185)
.+++||+|.|||||||||
T Consensus 22 ~~lVViTG~SGSGKSSLA 39 (956)
T TIGR00630 22 DKLVVITGLSGSGKSSLA 39 (956)
T ss_pred CCEEEEECCCCCCCHHHH
T ss_conf 866999745688615456
No 286
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.10 E-value=0.0004 Score=44.67 Aligned_cols=24 Identities=38% Similarity=0.641 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+|||||||||+++-|..-
T Consensus 45 GE~~~llGpsGsGKSTllr~i~Gl 68 (377)
T PRK11607 45 GEIFALLGASGCGKSTLLRMLAGF 68 (377)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999984899999999769
No 287
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=97.09 E-value=0.00051 Score=44.10 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|.++.|+||+|||||||++.|..-.|
T Consensus 23 Ge~v~iiGpNGaGKSTLlk~i~Gl~p 48 (245)
T PRK03695 23 GEILHLVGPNGAGKSTLLARMAGLLS 48 (245)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 98999997899419999999846688
No 288
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.09 E-value=0.00074 Score=43.15 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+||||||||||++.|..-
T Consensus 33 Ge~~aiiG~nGsGKSTLl~~l~Gl 56 (280)
T PRK13649 33 GSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999959998699999999669
No 289
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.08 E-value=0.00085 Score=42.79 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|.++.|+||+|+|||||.+-|+...+
T Consensus 28 Gei~~l~G~NGaGKTTLlk~i~Gl~~ 53 (206)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLLAGLLP 53 (206)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 94999989999989999999958878
No 290
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=97.08 E-value=0.00046 Score=44.32 Aligned_cols=54 Identities=19% Similarity=0.377 Sum_probs=39.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC--CCCCCCCCCCHHHH
Q ss_conf 89998899999899999998518981799861188899983--23553000123542
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDE--KQYIDYRFISQSQF 58 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E--~~g~dY~Fvs~e~F 58 (185)
.++|+|++-+|||||.+.|....... ...+.|||-+..|. .++..+.|++-.-|
T Consensus 2 ~VaivG~pNvGKStL~N~L~g~~~~v-~~~p~TTr~~~~~~~~~~~~~~~liDTpGi 57 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEV-APYPFTTKSLFVGHFDYKYLRWQVIDTPGL 57 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEE-CCCCCCCCCCEEEEEEECCCEEEEECCCCC
T ss_conf 79998899988999999995898602-375872357436899983727687248865
No 291
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.07 E-value=0.00083 Score=42.85 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=22.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|.++.|+||+|+|||||++-|+...+
T Consensus 30 Gei~~LiGpNGaGKSTLlk~I~Gl~~ 55 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGLVA 55 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 97999998999889999999966888
No 292
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.07 E-value=0.00086 Score=42.75 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=24.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 718999889999989999999851898179986
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVG 34 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is 34 (185)
|.+++|+||+|||||||.+-+..-..--...|.
T Consensus 26 G~i~~i~G~NGsGKSTLlk~i~Gl~~p~~G~I~ 58 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGIMQPSSGNIY 58 (195)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEE
T ss_conf 979999999998199999999679889840899
No 293
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.07 E-value=0.00076 Score=43.06 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=24.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 71899988999998999999985189817998
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPV 33 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~i 33 (185)
|.++.|+||+|||||||++.|....+-....|
T Consensus 28 GEi~gLIGPNGAGKSTLLk~I~Gll~P~~G~V 59 (409)
T PRK09536 28 GHLVGVVGPNGAGKTTLLRAMNGLITPTAGTV 59 (409)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCEEE
T ss_conf 98999999987279999999966888896399
No 294
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.06 E-value=0.00086 Score=42.76 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||+|||||||++.|..-.
T Consensus 27 Gei~~liGpNGaGKSTLlk~l~Gl~ 51 (271)
T PRK13638 27 SPVTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9799999999980999999996688
No 295
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.06 E-value=0.00072 Score=43.21 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||+|||||||++.+..-.
T Consensus 33 Ge~~~iiGpNGaGKSTLlk~i~Gll 57 (265)
T PRK10253 33 GHFTAIIGPNGCGKSTLLRTLSRLM 57 (265)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9799999998839999999997498
No 296
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.06 E-value=0.00083 Score=42.86 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||+|||||||++.|..-.
T Consensus 32 Ge~~aiiG~NGaGKSTLl~~i~Gll 56 (285)
T PRK13636 32 GEVTAILGGNGAGKSTLFQNLNGIL 56 (285)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999980999999996598
No 297
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.06 E-value=0.00089 Score=42.66 Aligned_cols=51 Identities=16% Similarity=0.131 Sum_probs=35.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf 71899988999998999999985189-817998611888999832355300012354211102
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE-YLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKH 63 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~-~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~ 63 (185)
|-.+.|+||||+||+|+.+.++.-.+ .-.. +. -.|++|--.+.+.|.+.+.
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Lisp~~G~-l~----------f~Ge~vs~~~pea~Rq~Vs 80 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLISPTSGT-LL----------FEGEDVSTLKPEAYRQQVS 80 (223)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCCCCE-EE----------ECCCCCCCCCHHHHHHHHH
T ss_conf 8548876788766889999998136998852-88----------7473344348599999999
No 298
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.05 E-value=0.00084 Score=42.83 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||+|+|||||++.|....
T Consensus 25 Ge~~~i~G~nGaGKSTLl~~l~gl~ 49 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9799998788999899999995884
No 299
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.05 E-value=0.00052 Score=44.01 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+||+|||||||++.|..-
T Consensus 28 Ge~vaiiG~nGsGKSTLl~~l~Gl 51 (275)
T PRK13639 28 GEMIAILGPNGAGKSTLFLHFNGI 51 (275)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999996499999999739
No 300
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=97.05 E-value=0.00055 Score=43.87 Aligned_cols=92 Identities=14% Similarity=0.208 Sum_probs=53.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEE-EEEEEECCCEEEEECC
Q ss_conf 999889999989999999851898179986118889998323553000123542111027636-4455504860554432
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLF-IETTKVRDEYYGYLKE 83 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~f-lE~~~~~g~~YGt~~~ 83 (185)
|.|+||+|||||=|++.|.... +++|+++=-|==-=+|=+ |.| | +.-..++++.-.+ +|-++ .|-- -.+
T Consensus 155 ILLiGPTGSGKTLLAqTLA~~L-~VPfAiADATtLTEAGYV-GED---V-ENIL~~Llq~ad~DV~kA~-kGIi---YID 224 (452)
T TIGR00382 155 ILLIGPTGSGKTLLAQTLARIL-NVPFAIADATTLTEAGYV-GED---V-ENILLKLLQAADYDVEKAQ-KGII---YID 224 (452)
T ss_pred EEEECCCCCCHHHHHHHHHHHC-CCCEEECCHHHHHCCCCC-CCC---H-HHHHHHHHHHCCCCHHHHC-CCEE---EEE
T ss_conf 2454688852689999999873-887421111102006642-422---8-8999999874145524527-8508---984
Q ss_pred CHHHHHH--HCCCCCCCCCCCCHHH
Q ss_conf 0023332--0123200243100013
Q gi|254781197|r 84 DINNPME--HGYDILLILTHQGLAP 106 (185)
Q Consensus 84 ~i~~~~~--~g~~~il~id~~G~~~ 106 (185)
+|+++.+ ++.++-=||.=+|++|
T Consensus 225 EIDKIaRkSEN~SITRDVSGEGVQQ 249 (452)
T TIGR00382 225 EIDKIARKSENPSITRDVSGEGVQQ 249 (452)
T ss_pred CCCCHHHHCCCCEEEEEECCCHHHH
T ss_conf 2231012157780112217554999
No 301
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.05 E-value=0.00052 Score=44.03 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=20.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
|-+++|+||||||||||.+.|..
T Consensus 30 GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 30 GEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
T ss_conf 86899987888868999999866
No 302
>PRK00089 era GTP-binding protein Era; Reviewed
Probab=97.05 E-value=0.0004 Score=44.70 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=37.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC--CCCCCCCCHHH
Q ss_conf 8999889999989999999851898179986118889998323--55300012354
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQ--YIDYRFISQSQ 57 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~--g~dY~Fvs~e~ 57 (185)
.+.|+|++-||||||.|.|+.+.-.+.-..+.|||-+=.|-.. +..+.|++-.-
T Consensus 10 ~VaivG~PNvGKSTL~N~l~~~k~siVS~k~~TTR~~i~gi~~~~~~q~i~iDTpG 65 (296)
T PRK00089 10 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPG 65 (296)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECCEEEEEEECCC
T ss_conf 99999899988899999996896176149599872838999997997999998998
No 303
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.04 E-value=0.00051 Score=44.09 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+||||||||||++.+..-
T Consensus 32 Ge~vaiiG~nGsGKSTLl~~l~Gl 55 (288)
T PRK13643 32 GSYTALIGHTGSGKSTLLQHLNGL 55 (288)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999994799999999748
No 304
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=97.04 E-value=0.0013 Score=41.76 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=19.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
|.++.|+||||||||||++-|..
T Consensus 34 Ge~v~i~G~nGsGKSTll~~l~g 56 (648)
T PRK10535 34 GEMVAIVGASGSGKSTLMNILGC 56 (648)
T ss_pred CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 98999999999629999999956
No 305
>TIGR01187 potA polyamine ABC transporter, ATP-binding protein; InterPro: IPR005893 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belongs to the larger ATP-Binding Cassette (ABC) transporter superfamily. Polyamines like spermidine and putrescine play a vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).; GO: 0015417 polyamine-transporting ATPase activity, 0015846 polyamine transport, 0016020 membrane.
Probab=97.04 E-value=0.00038 Score=44.85 Aligned_cols=119 Identities=17% Similarity=0.185 Sum_probs=61.3
Q ss_pred EECCCCCCHHHHHHHHHHH-CCC---EEEE-EEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCC-EEEE
Q ss_conf 9889999989999999851-898---1799-86118889998323553000123542111027636445550486-0554
Q gi|254781197|r 7 LIGASGVGETTIAKQVVLN-SEY---LVMP-VGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDE-YYGY 80 (185)
Q Consensus 7 i~GpSGsGK~tl~~~L~~~-~~~---~~~~-is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~-~YGt 80 (185)
|.||||||||||...|..- .|+ +.+. ..-|.+||-.=.++ --|=|=+=|=-|- ++-.-.+|- .-|+
T Consensus 1 LLGpSGcGKTTlLrlLAGf~~pd~G~i~ldg~d~~~vPp~~R~in---~vFQsYALFPHMT-----v~~NvAfgLk~~k~ 72 (331)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTEVPPHLRSIN---MVFQSYALFPHMT-----VEENVAFGLKMRKV 72 (331)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCC---CEEECCCCCCCCC-----HHHHCCCCCCCCCC
T ss_conf 978888747999999834587775507756710121572206146---0573543562122-----77645444351788
Q ss_pred ECCCHHHHHHHCCCCCCCCCCCCHHH-------------HHHCCCCCHHHHHHCCCCHHHHHHHHHHC
Q ss_conf 43200233320123200243100013-------------32105531011222133289999988630
Q gi|254781197|r 81 LKEDINNPMEHGYDILLILTHQGLAP-------------LKKLYEDQVTSIFIAPPSEAELIQRRIKR 135 (185)
Q Consensus 81 ~~~~i~~~~~~g~~~il~id~~G~~~-------------lk~~~~~~~~~IfI~pps~~~L~~RL~~R 135 (185)
++++|..-..+-.. ++.+.--|.++ |-++.=++|. |.+...++--|=++|+++
T Consensus 73 ~~~ei~~RV~e~L~-~V~L~~~a~rkp~qLSGGQ~QRvAlARa~v~kPk-~LLlDEpLsALD~kLR~~ 138 (331)
T TIGR01187 73 PRAEIKPRVKEALR-LVQLEEFAKRKPHQLSGGQQQRVALARALVFKPK-ILLLDEPLSALDKKLRDQ 138 (331)
T ss_pred CHHHHHHHHHHHHH-HCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCC-EEEECCCHHHHHHHHHHH
T ss_conf 85668899999974-2130011046731046852899999999860895-677117722643898998
No 306
>PRK06217 hypothetical protein; Validated
Probab=97.04 E-value=0.00061 Score=43.64 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=21.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 97189998899999899999998518
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.+ |.|+|.||||||||+++|.+..
T Consensus 1 m~r-I~i~G~sGsGkSTla~~La~~l 25 (185)
T PRK06217 1 MMR-IHITGASGSGTTTLGAALAEAL 25 (185)
T ss_pred CCE-EEEECCCCCCHHHHHHHHHHHH
T ss_conf 967-9997899887899999999975
No 307
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=97.03 E-value=0.00028 Score=45.64 Aligned_cols=27 Identities=22% Similarity=0.481 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 718999889999989999999851898
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEY 28 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~ 28 (185)
|-+|.|=|||||||+|+++.|.++...
T Consensus 4 ~iiIAIDGPagsGKSTvak~lA~~Lg~ 30 (714)
T PRK09518 4 MIIVAIDGPAGVGKSSVSRALAQYFGY 30 (714)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 889997789865899999999999499
No 308
>TIGR01978 sufC FeS assembly ATPase SufC; InterPro: IPR010230 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry represents SufC, which acts as an ATPase in the SUF system. SufC belongs to the ATP-binding cassette transporter family (IPR003439 from INTERPRO) but is no longer thought to be part of a transporter. The complex is reported as cytosolic or associated with the membrane.; GO: 0005524 ATP binding, 0006810 transport.
Probab=97.02 E-value=0.0011 Score=42.14 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=41.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC--CCCCCCCCCCHHHHHHHCCCCEEEEE
Q ss_conf 7189998899999899999998518981799861188899983--23553000123542111027636445
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDE--KQYIDYRFISQSQFKGWKHTGLFIET 70 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E--~~g~dY~Fvs~e~F~~~i~~g~flE~ 70 (185)
|-|-+|+||=|||||||++.|+.++ ....+ .|+ -+|+| +.+=+-++....|-||-.
T Consensus 26 GE~HAiMGPNGsGKSTL~~~iaGhp-~y~vt---------~G~I~f~G~D---ll~l~~~ERAR~GlFLaF 83 (248)
T TIGR01978 26 GEIHAIMGPNGSGKSTLSKTIAGHP-KYEVT---------SGTILFKGQD---LLELEPDERARAGLFLAF 83 (248)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCC-CEEEE---------EEEEEECCEE---CCCCCHHHHHCCCCEECC
T ss_conf 5179986889984788877761799-33784---------2089877652---001896556405651015
No 309
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=97.02 E-value=0.00079 Score=42.98 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=27.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 718999889999989999999851898179986
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVG 34 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is 34 (185)
+|=|||+|-.||||||++|.|+...|.=.+.|+
T Consensus 158 ~knIii~GGTgSGKTTf~kal~~~IP~~ER~iT 190 (328)
T TIGR02788 158 RKNIIISGGTGSGKTTFLKALVKEIPKDERLIT 190 (328)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEE
T ss_conf 891999906897189999999732762252788
No 310
>KOG1969 consensus
Probab=97.02 E-value=0.0029 Score=39.71 Aligned_cols=126 Identities=20% Similarity=0.198 Sum_probs=63.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEE-E----------------------EEC---CCCCC--CCCCCCCCCCCC
Q ss_conf 7189998899999899999998518981799-8----------------------611---88899--983235530001
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMP-V----------------------GVT---TRRPR--VDEKQYIDYRFI 53 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~-i----------------------s~T---TR~~R--~~E~~g~dY~Fv 53 (185)
.||..++||.|.|||||+.-+..+- ++..+ | |.+ +||.= .+|+||-.--||
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqa-GYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~~V 404 (877)
T KOG1969 326 KKILLLCGPPGLGKTTLAHVIAKQA-GYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRAAV 404 (877)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHC-CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHH
T ss_conf 0068753688787247999999862-854887325554347889999999886411225688863599842468728999
Q ss_pred CHHHHHHHCCCCEEEEEEEECCCEEEEECCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHH
Q ss_conf 23542111027636445550486055443200233320123200243100013321055310112221332899999886
Q gi|254781197|r 54 SQSQFKGWKHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRI 133 (185)
Q Consensus 54 s~e~F~~~i~~g~flE~~~~~g~~YGt~~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~ 133 (185)
+....|++...-.+++.-.++- |.-+..=.+.+. +.+|.+++-.=+-+|+..-+.. ..|.+.||+...|.+||.
T Consensus 405 --dvilslv~a~~k~~~Gkq~~~~-~~rkkkr~~~L~--RPIICICNdLYaPaLR~Lr~~A-~ii~f~~p~~s~Lv~RL~ 478 (877)
T KOG1969 405 --DVILSLVKATNKQATGKQAKKD-KKRKKKRSKLLT--RPIICICNDLYAPALRPLRPFA-EIIAFVPPSQSRLVERLN 478 (877)
T ss_pred --HHHHHHHHHHCCHHHCCCCCCH-HHHHHHCCCCCC--CCEEEEECCCCCHHHHHCCCCE-EEEEECCCCHHHHHHHHH
T ss_conf --9999999741614216866320-345553046545--8778986475553333102104-899956997668999999
Q ss_pred H
Q ss_conf 3
Q gi|254781197|r 134 K 134 (185)
Q Consensus 134 ~ 134 (185)
.
T Consensus 479 ~ 479 (877)
T KOG1969 479 E 479 (877)
T ss_pred H
T ss_conf 9
No 311
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.01 E-value=0.00064 Score=43.51 Aligned_cols=22 Identities=27% Similarity=0.656 Sum_probs=19.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 7189998899999899999998
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVV 23 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~ 23 (185)
+-||.|+||.|||||||.+.++
T Consensus 30 ~gLFlI~G~TGAGKSTIlDAIt 51 (1047)
T PRK10246 30 NGLFAITGPTGAGKTTLLDAIC 51 (1047)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 8878888999998899999999
No 312
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.01 E-value=0.00049 Score=44.20 Aligned_cols=20 Identities=50% Similarity=0.720 Sum_probs=17.3
Q ss_pred CCEEEEECCCCCCHHHHHHH
Q ss_conf 71899988999998999999
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQ 21 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~ 21 (185)
|-++|++|||||||||+.+-
T Consensus 27 gef~vliGpSGsGKTTtLkM 46 (309)
T COG1125 27 GEFLVLIGPSGSGKTTTLKM 46 (309)
T ss_pred CEEEEEECCCCCCHHHHHHH
T ss_conf 72899987899757879999
No 313
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=97.01 E-value=0.00073 Score=43.17 Aligned_cols=116 Identities=10% Similarity=0.058 Sum_probs=55.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC-EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEE
Q ss_conf 718999889999989999999851898-1799861188899983235530001235421110276364455504860554
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEY-LVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGY 80 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~-~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt 80 (185)
++.|+++||.||||||+++.|+...+. -..+++-= -|.+-...+.+. ++...-.+.. +
T Consensus 139 ~~~ilIsG~TGSGKTT~l~all~~i~~~~~riitiE--D~~El~l~~~~~-----------------v~l~~~~~~~--t 197 (283)
T pfam00437 139 RGNILVSGGTGSGKTTLLYALLNEINTDDERIVTIE--DPVEIQLEGPNQ-----------------VQLNTRLAGV--T 197 (283)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEC--CCCEECCCCCCE-----------------EEEEECCCCC--C
T ss_conf 975999889999889999999984087776278733--785231798878-----------------9998558876--9
Q ss_pred ECCCHHHHHHHCCCCCCCCCCCCHHHH---HHCCCCCHHHH-HHCCCCHHHHHHHHHHCCCC
Q ss_conf 432002333201232002431000133---21055310112-22133289999988630342
Q gi|254781197|r 81 LKEDINNPMEHGYDILLILTHQGLAPL---KKLYEDQVTSI-FIAPPSEAELIQRRIKRRED 138 (185)
Q Consensus 81 ~~~~i~~~~~~g~~~il~id~~G~~~l---k~~~~~~~~~I-fI~pps~~~L~~RL~~R~~d 138 (185)
..+.+...+..+-+.|+.=++.|.... +...-=...++ =+.+.|-.....||..-|.+
T Consensus 198 ~~~ll~~~LR~~PD~IivGEiR~~Ea~~~l~a~~TGH~g~ltTiHA~sa~~ai~RL~~lg~~ 259 (283)
T pfam00437 198 FADLLRAALRQRPDRIMVGEIRDGETADILRAANTGHPGSLSTLHANSAAGALTRLEQLGME 259 (283)
T ss_pred HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCC
T ss_conf 99999996388999897578699899999999975998407857149989999999985643
No 314
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.01 E-value=0.00067 Score=43.40 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
|.++.|+||+|+||||+++-|..
T Consensus 25 GEiv~ilGpNGaGKSTllk~i~G 47 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
T ss_conf 98999989999999999999968
No 315
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.00 E-value=0.00058 Score=43.77 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||+|+|||||++.|..-.
T Consensus 26 Gei~~liGpNGaGKSTL~~~i~Gl~ 50 (230)
T TIGR03410 26 GEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9799999999940999999997799
No 316
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.00 E-value=0.0011 Score=42.18 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||+|||||||++.|..-.
T Consensus 31 Gei~~liGpnGaGKSTL~~~i~Gl~ 55 (255)
T PRK11300 31 QEVVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9799999899964999999996798
No 317
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.00 E-value=0.0005 Score=44.13 Aligned_cols=18 Identities=33% Similarity=0.704 Sum_probs=16.7
Q ss_pred CCEEEEECCCCCCHHHHH
Q ss_conf 718999889999989999
Q gi|254781197|r 2 AHIFVLIGASGVGETTIA 19 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~ 19 (185)
+|++||+|+|||||++|+
T Consensus 26 ~klvViTGvSGSGKSSLA 43 (944)
T PRK00349 26 DKLVVITGLSGSGKSSLA 43 (944)
T ss_pred CCEEEEECCCCCCHHHHH
T ss_conf 988999889888689999
No 318
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.00 E-value=0.00064 Score=43.50 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|.||||||||||.+.+..-
T Consensus 24 g~i~~l~GpsGaGKTTLl~~iaGl 47 (352)
T PRK11144 24 QGITAIFGRSGAGKTSLINLISGL 47 (352)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999996299999999768
No 319
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.99 E-value=0.0013 Score=41.74 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=24.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 8999889999989999999851898179986118
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTT 37 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TT 37 (185)
=|.++||+|||||-|++.|.+ .-+.+|++.--|
T Consensus 111 NILliGPTG~GKTlla~tLAk-~l~vPF~iaDAT 143 (411)
T PRK05342 111 NILLIGPTGSGKTLLAQTLAR-ILNVPFAIADAT 143 (411)
T ss_pred CEEEECCCCCCHHHHHHHHHH-HHCCCEEEEEEC
T ss_conf 389989999778899999999-869998998612
No 320
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=96.99 E-value=0.00097 Score=42.44 Aligned_cols=25 Identities=16% Similarity=0.481 Sum_probs=15.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||||||||||++.|....
T Consensus 29 Ge~~~LvG~NGaGKSTL~k~l~G~l 53 (490)
T PRK10938 29 GDSWAFVGSNGSGKSALARALAGEL 53 (490)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999799977999999995699
No 321
>pfam10662 PduV-EutP Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood.
Probab=96.99 E-value=0.00051 Score=44.06 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=21.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9718999889999989999999851
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.| +.|+|+++||||||.++|..+
T Consensus 1 Mkk-VaivGrpNvGKSTLlN~L~g~ 24 (143)
T pfam10662 1 MKK-IMLIGRSGCGKTTLTQALNGE 24 (143)
T ss_pred CCE-EEEECCCCCCHHHHHHHHCCC
T ss_conf 975-999899999999999997599
No 322
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=96.99 E-value=0.0012 Score=41.84 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|.++.|+|+|||||||+++.|+.-.+
T Consensus 42 GE~vaLvGeSGSGKSTl~~~l~gll~ 67 (623)
T PRK10261 42 GETLAIVGESGSGKSVTALALMRLLE 67 (623)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 98999998999789999999977987
No 323
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=96.98 E-value=0.00028 Score=45.58 Aligned_cols=40 Identities=23% Similarity=0.290 Sum_probs=30.2
Q ss_pred EECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC
Q ss_conf 9889999989999999851898179986118889998323
Q gi|254781197|r 7 LIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQ 46 (185)
Q Consensus 7 i~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~ 46 (185)
|+|+++||||||++.|........-..+.|||.+..+..+
T Consensus 1 ivG~~N~GKStL~N~L~~~~~~~vs~~~gtT~~~~~~~~~ 40 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWE 40 (163)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCEECCCCCEECCCEEEEEE
T ss_conf 9197998999999999589961016989986564589999
No 324
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.98 E-value=0.00072 Score=43.22 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|-+..++||||+||||+++.++..
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 608998678888789999999841
No 325
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=96.97 E-value=0.0012 Score=41.94 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=17.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||||||||||++.|..-.
T Consensus 30 Gei~~liG~nGaGKSTL~~~l~G~~ 54 (501)
T PRK10762 30 GRVMALVGENGAGKSTLMKVLTGIY 54 (501)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9699998999982999999995799
No 326
>TIGR00602 rad24 checkpoint protein rad24; InterPro: IPR004582 To be effective as a mechanism that preserves genomic integrity, the DNA damage checkpoint must be extremely sensitive in its ability to detect DNA damage. In Saccharomyces cerevisiae the Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components which may promote checkpoint activation by "sensing" DNA damage directly . Rad24 shares sequence homology with RF-c, a protein that recognises DNA template/RNA primer hybrids during DNA replication. The Ddc1 complex has structural homology to proliferating-cell nuclear antigen (PCNA), which clamps onto DNA and confers processivity to DNA polymerases delta and epsilon. Rad24 is postulated to recognise DNA lesions and then recruit the Ddc1 complex to generate checkpoint signals. ; GO: 0006281 DNA repair, 0007049 cell cycle, 0005634 nucleus.
Probab=96.96 E-value=0.00066 Score=43.43 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=22.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|-|+.|+||||.||+|.++.|.+...
T Consensus 118 Gs~LLi~GPsGCgKsT~~k~LsKelg 143 (670)
T TIGR00602 118 GSILLITGPSGCGKSTTIKILSKELG 143 (670)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 53788417558844789999988864
No 327
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=96.96 E-value=0.00069 Score=43.33 Aligned_cols=55 Identities=20% Similarity=0.279 Sum_probs=41.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC--CCCCCCCCCCHH
Q ss_conf 7189998899999899999998518981799861188899983--235530001235
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDE--KQYIDYRFISQS 56 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E--~~g~dY~Fvs~e 56 (185)
|--++|+||.-|||+||.|.|+.++--+.-.++-|||-.=..+ .+|.-..|++-.
T Consensus 216 G~~v~i~G~PN~GKSSL~N~L~~~drAIVS~ipGTTRD~ie~~l~l~G~~v~l~DTA 272 (445)
T PRK05291 216 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTA 272 (445)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEEECCEEEEEEECC
T ss_conf 986998899987689999998578746731899974040223689999899999899
No 328
>TIGR01351 adk adenylate kinases; InterPro: IPR006259 Most members of this family are known or believed to be adenylate kinase. Adenylate kinase (ADK) 2.7.4.3 from EC converts ATP + AMP to ADP + ADP, that is, it uses ATP as a phosphate donor for AMP. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). However, some members accept other nucleotide triphosphates as donors, and may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (2.7.4.10 from EC) is Q9UIJ7 from SWISSPROT, a GTP:AMP phosphotransferase that has been identified in bovine heart and human cells and derived from mitrochondrail GTP AMP that is specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate .This family is designated subfamily rather than equivalog for this reason. ADK has also been identified in different bacterial species and in yeast . Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge. ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=96.95 E-value=0.00071 Score=43.24 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=23.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 9998899999899999998518981799
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEYLVMP 32 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~~~~~ 32 (185)
+||+||.||||.|.++.|.+++.-.+.|
T Consensus 2 ~~~lGpPGsGKGTQa~~i~~~~gl~HIS 29 (232)
T TIGR01351 2 LILLGPPGSGKGTQAKRIAEKLGLPHIS 29 (232)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 4675598987667999999860885020
No 329
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=96.95 E-value=0.0013 Score=41.79 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=19.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|.++.|+||||||||||++-|..-.+
T Consensus 31 GEi~~liG~nGaGKSTL~~~l~G~~~ 56 (510)
T PRK09700 31 GEIHALLGENGAGKSTLMKVLSGIHE 56 (510)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 96999989999729999999837998
No 330
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.95 E-value=0.0013 Score=41.74 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|+++.|+||+|+||||+++-|+...
T Consensus 26 ge~~~l~G~NGsGKTTl~~~l~G~~ 50 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999899984999999984898
No 331
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=96.94 E-value=0.0008 Score=42.93 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=19.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|.++.|+||||||||||++.|..-.|
T Consensus 31 Ge~~~lvG~nGsGKSTL~~~l~Gl~p 56 (513)
T PRK13549 31 GEIVSLCGENGAGKSTLMKVLSGVYP 56 (513)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 97999989999729999999956788
No 332
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.94 E-value=0.001 Score=42.36 Aligned_cols=135 Identities=13% Similarity=0.117 Sum_probs=61.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEE-CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEC-CCEEE
Q ss_conf 7189998899999899999998518981799861-188899983235530001235421110276364455504-86055
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGV-TTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVR-DEYYG 79 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~-TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~-g~~YG 79 (185)
++-|+|+||.||||||+++.|+...|.-...++- .++.......|.+ + +++..-. +....
T Consensus 25 ~~nIlIsG~tGSGKTTll~al~~~i~~~~rivtiEd~~El~l~~~~~v--~----------------l~~~~~~~~~~~~ 86 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWV--R----------------LVTRPGNVEGSGE 86 (186)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCEE--E----------------EEEECCCCCCCCE
T ss_conf 998999899999899999999961334564598415354047777568--8----------------8860464578650
Q ss_pred -EECCCHHHHHHHCCCCCCCCCCCCHHH---HHHCC-CC-C-HHHHHHCCCCHHHHHHHHHH---CCCCCHHHHHHHHHH
Q ss_conf -443200233320123200243100013---32105-53-1-01122213328999998863---034207899999998
Q gi|254781197|r 80 -YLKEDINNPMEHGYDILLILTHQGLAP---LKKLY-ED-Q-VTSIFIAPPSEAELIQRRIK---RREDTPFNLDPDLFG 149 (185)
Q Consensus 80 -t~~~~i~~~~~~g~~~il~id~~G~~~---lk~~~-~~-~-~~~IfI~pps~~~L~~RL~~---R~~d~~~~i~~rl~~ 149 (185)
+..+.+...+..+-+.++.=++.|... ++... +- . ... +.++|-.....||.. ....+.+.+.+.
T Consensus 87 ~~~~~li~~aLR~~pd~iivGEiR~~Ea~~~l~a~~tGh~g~ltT--iHa~s~~~ai~Rl~~l~~~~~~~~~~~~~~--- 161 (186)
T cd01130 87 VTMADLLRSALRMRPDRIIVGEVRGGEALDLLQAMNTGHPGGMTT--IHANSAEEALTRLELLPSNVPLGRPLLREQ--- 161 (186)
T ss_pred ECHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCC--CCCCCHHHHHHHHHHHHHCCCCCHHHHHHH---
T ss_conf 349999887366899737317568399999999997489860303--158999999999998875479999999999---
Q ss_pred HHHCCCEEEE
Q ss_conf 7636988999
Q gi|254781197|r 150 KNHSYSFTIV 159 (185)
Q Consensus 150 ~~~~fD~~Iv 159 (185)
-..-+|++|.
T Consensus 162 ia~~id~vV~ 171 (186)
T cd01130 162 IKEAIDVIVH 171 (186)
T ss_pred HHHHCCEEEE
T ss_conf 9975779999
No 333
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.91 E-value=0.00087 Score=42.72 Aligned_cols=152 Identities=16% Similarity=0.218 Sum_probs=67.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECC--CCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEE
Q ss_conf 718999889999989999999851898179986118--889998323553000123542111027636445550486055
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTT--RRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYG 79 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TT--R~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YG 79 (185)
|.++.++|.||||||||++.|-+........ +|-- -..|.| =..|+=|-.++.-+....-
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~-~y~LDGDnvR~g--L~~dLgFs~edR~eniRRv--------------- 84 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYH-VYLLDGDNVRHG--LNRDLGFSREDRIENIRRV--------------- 84 (197)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCE-EEEECCHHHHHC--CCCCCCCCHHHHHHHHHHH---------------
T ss_conf 8599964688887879999999999975975-898557467650--0578897867899999999---------------
Q ss_pred EECCCHH-HHHHHCCCCCCC-CCCCCH--HHHHHCCCC-CHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-
Q ss_conf 4432002-333201232002-431000--133210553-1011222133289999988630342078999999987636-
Q gi|254781197|r 80 YLKEDIN-NPMEHGYDILLI-LTHQGL--APLKKLYED-QVTSIFIAPPSEAELIQRRIKRREDTPFNLDPDLFGKNHS- 153 (185)
Q Consensus 80 t~~~~i~-~~~~~g~~~il~-id~~G~--~~lk~~~~~-~~~~IfI~pps~~~L~~RL~~R~~d~~~~i~~rl~~~~~~- 153 (185)
..+- ...++|.++|.- |.|--. .+.++..+. ..+-||+.+| +++.++| |..-=..+.....-..
T Consensus 85 ---aevAkll~daG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~p-l~vce~R------DpKGLYkKAr~GeI~~f 154 (197)
T COG0529 85 ---AEVAKLLADAGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTP-LEVCERR------DPKGLYKKARAGEIKNF 154 (197)
T ss_pred ---HHHHHHHHHCCEEEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCC-HHHHHHC------CCHHHHHHHHCCCCCCC
T ss_conf ---9999999878908999751730999999999727686289995798-9999861------82578999975987787
Q ss_pred ------C------CEEEEC--CCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf ------9------889993--978999999999999998523648
Q gi|254781197|r 154 ------Y------SFTIVN--NHLPTACRQVGFIREFVKQHRIIK 184 (185)
Q Consensus 154 ------f------D~~IvN--ddle~a~~~l~~I~e~~~~~~~~~ 184 (185)
| |.++.. .++++++++ |++.++.+..++
T Consensus 155 TGid~pYE~P~~Pel~l~t~~~~vee~v~~---i~~~l~~~~~~~ 196 (197)
T COG0529 155 TGIDSPYEAPENPELHLDTDRNSVEECVEQ---ILDLLKERKIIK 196 (197)
T ss_pred CCCCCCCCCCCCCEEEECCCCCCHHHHHHH---HHHHHHHCCCCC
T ss_conf 577888889999826750665789999999---999998515235
No 334
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.90 E-value=0.0015 Score=41.30 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||||||||||++-|..-.
T Consensus 24 Gei~~liG~nGsGKSTL~~~l~Gl~ 48 (491)
T PRK10982 24 HSIHALMGENGAGKSTLLKCLFGIY 48 (491)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9699998999981999999995698
No 335
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=96.90 E-value=0.0012 Score=41.99 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 899988999998999999985189
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
+|+|-|+-||||||+++.|.+..+
T Consensus 1 lI~iEG~iGsGKSTl~~~L~~~~~ 24 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLG 24 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 989988888889999999999669
No 336
>KOG0055 consensus
Probab=96.89 E-value=0.0015 Score=41.28 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=12.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
|+.+.|+|||||||+|+.+.|..
T Consensus 379 G~~valVG~SGsGKST~i~LL~R 401 (1228)
T KOG0055 379 GQTVALVGPSGSGKSTLIQLLAR 401 (1228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 98899988999879999999997
No 337
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.89 E-value=0.00092 Score=42.58 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||+|||||||++-+..-.
T Consensus 28 Gei~~llG~NGaGKSTLl~~i~Gl~ 52 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9599999899973999999996698
No 338
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.89 E-value=0.0012 Score=42.02 Aligned_cols=49 Identities=24% Similarity=0.208 Sum_probs=32.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 71899988999998999999985189817998611888999832355300012354211
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKG 60 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~ 60 (185)
|-.+-|+|||||||+||++.|..--+....+|. .||-|..==++++|-+
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VR----------LDga~l~qWd~e~lG~ 410 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVGIWPPTSGSVR----------LDGADLRQWDREQLGR 410 (580)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEE----------ECCHHHHCCCHHHHCC
T ss_conf 866788788876577899999811356787377----------5626451279888511
No 339
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein; InterPro: IPR005285 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes transporters, whose physiological function is not yet established. These proteins are thought to confer resistance to the chemicals cycloheximide and sulphomethuron methyl, BFA, azole antifungal agents, other antifungal agents: amorolfine and terbinafine. Some of them could serve as an efflux pump of various antibiotics..
Probab=96.89 E-value=0.00057 Score=43.82 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=12.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|+|=.|+|.||+|||||++-|.++
T Consensus 853 G~lTALMG~SGAGKTTLLn~La~R 876 (1466)
T TIGR00956 853 GTLTALMGASGAGKTTLLNVLAER 876 (1466)
T ss_pred CEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 857651578876357888644330
No 340
>TIGR00618 sbcc exonuclease SbcC; InterPro: IPR004592 All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. SbcC may have nuclease activity that is functionally related to one of the nuclease activities of the RecBCD enzyme (IPR004586 from INTERPRO).; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=96.89 E-value=0.00078 Score=43.01 Aligned_cols=21 Identities=29% Similarity=0.741 Sum_probs=19.4
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 189998899999899999998
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQVV 23 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L~ 23 (185)
++|+|+||.|||||||.+.++
T Consensus 31 ~~f~i~G~tGAGKtsLldAI~ 51 (1063)
T TIGR00618 31 KLFVICGKTGAGKTSLLDAIT 51 (1063)
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 736777889983545999999
No 341
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=96.89 E-value=0.0009 Score=42.66 Aligned_cols=50 Identities=10% Similarity=0.065 Sum_probs=31.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC---EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 718999889999989999999851898---179986118889998323553000123542111
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEY---LVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGW 61 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~---~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~ 61 (185)
|.++-|+|+|||||||+++.|+.-.+. ....|. .+|+|..=.++.++.+.
T Consensus 42 GEilgivGeSGsGKSTl~~~i~gll~~~~~~sG~I~----------~~G~~i~~~~~~~~~~~ 94 (330)
T PRK09473 42 GETLGIVGESGSGKSQTAFALMGLLAANGRIGGSAT----------FNGREILNLPEKELNKL 94 (330)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEE----------ECCEECCCCCHHHHHHH
T ss_conf 989999868987799999999768888883358999----------99998665899999986
No 342
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=96.88 E-value=0.0015 Score=41.37 Aligned_cols=26 Identities=35% Similarity=0.578 Sum_probs=22.2
Q ss_pred CC--CEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 97--189998899999899999998518
Q gi|254781197|r 1 MA--HIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 1 m~--kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|+ +.++++|-+||||||+.+.+.+..
T Consensus 1 mk~~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 1 MKGRKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9975599997579887266999999877
No 343
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=96.87 E-value=0.00041 Score=44.66 Aligned_cols=121 Identities=17% Similarity=0.160 Sum_probs=56.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEEE
Q ss_conf 71899988999998999999985189817998611888999832355300012354211102763644555048605544
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYL 81 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt~ 81 (185)
.+.|++.|++|||||++++.+......-..++ +|+=+|. --...|..+...+..--....+..---..
T Consensus 12 Pkai~laG~pGAGKS~~~~~~~~~~~~~~~v~-----------In~D~~r-~~~P~y~~l~~~~~~~~~~~~~~~a~~~~ 79 (191)
T pfam06414 12 PVAVLLGGQPGAGKTELARALLEELGGGNVVR-----------IDPDELR-TYHPDYDELQKADPKDASELTQPDASRWV 79 (191)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCEE-----------ECCHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 87999957998888999999987537899389-----------7135878-87774786554076778999899999999
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCH-------HHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 32002333201232002431000-------13321055310112221332899999886303
Q gi|254781197|r 82 KEDINNPMEHGYDILLILTHQGL-------APLKKLYEDQVTSIFIAPPSEAELIQRRIKRR 136 (185)
Q Consensus 82 ~~~i~~~~~~g~~~il~id~~G~-------~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~ 136 (185)
...++.+++.+..+|++-..... +.+++. +..+..+|+..| .+.=..|...|-
T Consensus 80 ~~~~~~a~~~r~n~iiegT~~~~~~~~~~~~~lk~~-GY~v~v~~Va~~-~e~S~~r~~~Ry 139 (191)
T pfam06414 80 EKLIDYAIERGYNIILEGTLRSPDVARKLARKLKAA-GYEVEVYVVAVP-PELSWLGVLDRY 139 (191)
T ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHC-CCEEEEEEEECC-HHHHHHHHHHHH
T ss_conf 999999997599989857778979999999999978-997999999889-999999999999
No 344
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=96.87 E-value=0.00074 Score=43.15 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=33.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC
Q ss_conf 999889999989999999851898179986118889998323
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQ 46 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~ 46 (185)
++|+|++.||||||.+.|....+.. ..-++|||.|-+|-..
T Consensus 3 V~LVG~PN~GKSTLln~LT~a~~~v-~~ypfTT~~pi~g~~~ 43 (233)
T cd01896 3 VALVGFPSVGKSTLLSKLTNTKSEV-AAYEFTTLTCVPGVLE 43 (233)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCC-CCCCCCCCCCEEEEEE
T ss_conf 9999999999999999997899543-6989787574777999
No 345
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.87 E-value=0.00099 Score=42.40 Aligned_cols=26 Identities=35% Similarity=0.572 Sum_probs=22.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 18999889999989999999851898
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQVVLNSEY 28 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L~~~~~~ 28 (185)
-+++++||+|+||+||++.|.+.+..
T Consensus 40 ~vVavvGPpgvGKtTLiksLvk~ytk 65 (225)
T cd01882 40 LVVAVVGPPGVGKTTLIKSLVKNYTK 65 (225)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 69999898997788999999999854
No 346
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.86 E-value=0.00088 Score=42.71 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 89998899999899999998518
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~ 26 (185)
+|.++|.||||||||++.|.+..
T Consensus 1 ViW~tGLsgsGKTTlA~~l~~~L 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98987999999999999999999
No 347
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=96.86 E-value=0.00076 Score=43.08 Aligned_cols=18 Identities=17% Similarity=0.414 Sum_probs=16.5
Q ss_pred CCEEEEECCCCCCHHHHH
Q ss_conf 718999889999989999
Q gi|254781197|r 2 AHIFVLIGASGVGETTIA 19 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~ 19 (185)
+|++||+|+|||||++|+
T Consensus 961 nkLvViTGvSGSGKSSLA 978 (1809)
T PRK00635 961 NALTAITGPSASGKHSLV 978 (1809)
T ss_pred CCEEEEECCCCCCHHHHH
T ss_conf 866999789888689999
No 348
>pfam01121 CoaE Dephospho-CoA kinase. This family catalyses the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form Coenzyme A EC:2.7.1.24. This enzyme uses ATP in its reaction.
Probab=96.86 E-value=0.0021 Score=40.55 Aligned_cols=48 Identities=10% Similarity=0.091 Sum_probs=34.1
Q ss_pred HHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH------HHCCCEEEECC-CHH
Q ss_conf 11222133289999988630342078999999987------63698899939-789
Q gi|254781197|r 116 TSIFIAPPSEAELIQRRIKRREDTPFNLDPDLFGK------NHSYSFTIVNN-HLP 164 (185)
Q Consensus 116 ~~IfI~pps~~~L~~RL~~R~~d~~~~i~~rl~~~------~~~fD~~IvNd-dle 164 (185)
..|+|.+| .+.-.+|+.+|+.-+.+++.+|+.+. .+.-|++|.|+ +++
T Consensus 124 ~ii~V~a~-~~~r~~Rl~~R~~~s~~~~~~~~~~Q~~~~~k~~~aD~vI~Nngsi~ 178 (179)
T pfam01121 124 RVLVVDAP-VELQVERLMQRDGLSREQVQAIIAAQASREERLALADDVLDNDSGLA 178 (179)
T ss_pred EEEEEECC-HHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHCCEEEECCCCCC
T ss_conf 59999879-99999999980599999999999968998999986999998989889
No 349
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=96.85 E-value=0.0009 Score=42.63 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=33.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCC--CCCCCCCCCCCHHHHHHHC
Q ss_conf 718999889999989999999851898179986118889998--3235530001235421110
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVD--EKQYIDYRFISQSQFKGWK 62 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~--E~~g~dY~Fvs~e~F~~~i 62 (185)
|.++-|+|+|||||||+++.++.-.+.-.. + -.| ..+|.|..-++..+..++.
T Consensus 33 GEilgivGeSGsGKSTl~~~ilgll~~~~~-~-------~~g~i~~~g~dl~~~~~~~~~~~~ 87 (327)
T PRK11022 33 GEVVGIVGESGSGKSVSSLAIMGLIDYPGR-V-------MAEKLEFNGQDLQRISEKERRNLV 87 (327)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCC-E-------EEEEEEECCEECCCCCHHHHHHHH
T ss_conf 999999999987899999999748898997-6-------542799999997749999999863
No 350
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.82 E-value=0.0015 Score=41.37 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 89998899999899999998518
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~ 26 (185)
+|.|.|||||||+|+++.|.+..
T Consensus 1 ~I~I~G~~gsGKsT~a~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97883688887258999999995
No 351
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.82 E-value=0.0017 Score=41.10 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=17.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|..+.|+||+|||||||++-|....
T Consensus 29 Ge~vgLVG~NGsGKSTLl~iL~G~~ 53 (632)
T PRK11147 29 NERVCLVGRNGAGKSTLMKILSGEV 53 (632)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999987999999983899
No 352
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=96.81 E-value=0.0021 Score=40.54 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=18.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+||||||||||++-|...
T Consensus 30 Ge~~~lvG~nGaGKSTL~~~l~G~ 53 (501)
T PRK11288 30 GQVHALMGENGAGKSTLLKILSGN 53 (501)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 819999899998199999998479
No 353
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.80 E-value=0.001 Score=42.32 Aligned_cols=77 Identities=17% Similarity=0.260 Sum_probs=43.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCC--------EEEEEEEE
Q ss_conf 7189998899999899999998518981799861188899983235530001235421110276--------36445550
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTG--------LFIETTKV 73 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g--------~flE~~~~ 73 (185)
|.||||+|-|||||+||.+.+..-.+--...| .++|.|-.=++..+..++.... .++-|-++
T Consensus 54 GeIfViMGLSGSGKSTLvR~~NrLiept~G~i----------lv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtV 123 (386)
T COG4175 54 GEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEI----------LVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTV 123 (386)
T ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCCCCEE----------EECCCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 70899993587878899999735678877438----------98884320189999999986432133443133652257
Q ss_pred CCC-EEEEECCCHHHH
Q ss_conf 486-055443200233
Q gi|254781197|r 74 RDE-YYGYLKEDINNP 88 (185)
Q Consensus 74 ~g~-~YGt~~~~i~~~ 88 (185)
-.| -||.....+.+.
T Consensus 124 l~Nv~fGLev~Gv~~~ 139 (386)
T COG4175 124 LENVAFGLEVQGVPKA 139 (386)
T ss_pred HHHHHCCEEECCCCHH
T ss_conf 6640015333588889
No 354
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.80 E-value=0.001 Score=42.31 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||+||||||+++-|..-.
T Consensus 26 GEi~~liG~nGaGKSTll~~l~G~~ 50 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCEEEEECCCCCCCCHHHHHHCCCC
T ss_conf 9699998889999263778766986
No 355
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.80 E-value=0.00098 Score=42.44 Aligned_cols=24 Identities=33% Similarity=0.690 Sum_probs=19.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|+++.++||+||||||-+-+|..+
T Consensus 176 ggV~alVGPTGVGKTTTiAKLAAr 199 (404)
T PRK06995 176 GGVFALVGPTGVGKTTTTAKLAAR 199 (404)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 755898668887637589999999
No 356
>PRK13768 GTPase; Provisional
Probab=96.79 E-value=0.0014 Score=41.49 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 97189998899999899999998518
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.-.++++||.||||||.++.+.+..
T Consensus 1 M~~~~~ViGpaGSGKsT~~~~l~~~l 26 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLVGALSDWL 26 (253)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97189998999998899999999999
No 357
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=96.79 E-value=0.00023 Score=46.13 Aligned_cols=54 Identities=22% Similarity=0.359 Sum_probs=24.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCC--CCCCCCCCCCCHHHH
Q ss_conf 999889999989999999851898179986118889998--323553000123542
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVD--EKQYIDYRFISQSQF 58 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~--E~~g~dY~Fvs~e~F 58 (185)
+.|+|.+-|||+||.+.|+.+.--+.-.++-|||-+=.. +-+|..|.|++-.-.
T Consensus 175 iaiiGrpNvGKStl~N~ll~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~~iDTaGi 230 (438)
T PRK00093 175 IAIIGRPNVGKSTLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGI 230 (438)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCEEEEEECCCC
T ss_conf 99955888655678887654333204799985112326799989967999989898
No 358
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.78 E-value=0.00023 Score=46.10 Aligned_cols=56 Identities=21% Similarity=0.325 Sum_probs=31.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCC--CCCCCCCCCCCHHHHHH
Q ss_conf 999889999989999999851898179986118889998--32355300012354211
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVD--EKQYIDYRFISQSQFKG 60 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~--E~~g~dY~Fvs~e~F~~ 60 (185)
+.|+|..-|||+||.+.|+.+.--+.-.++-|||-+-.. +.+|..|.|++-.-+.+
T Consensus 175 iaivGrPNvGKSTl~N~ll~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~~iDTaGirk 232 (429)
T TIGR03594 175 IAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRR 232 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCC
T ss_conf 9997488765467777765433321479998631026879999990899998988763
No 359
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.78 E-value=0.0012 Score=41.87 Aligned_cols=24 Identities=21% Similarity=0.446 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+||+|||||||++-+..-
T Consensus 50 GEivgllG~NGaGKSTLlk~I~Gl 73 (264)
T PRK13546 50 GDVIGLVGINGSGKSTLSNIIGGS 73 (264)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999989986199999999679
No 360
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.78 E-value=0.0018 Score=40.94 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|-.+.|+||+|||||||++.|+...+
T Consensus 345 Ge~ialvG~NGsGKSTLlk~l~G~l~ 370 (632)
T PRK11147 345 GDKIALIGPNGCGKTTLLKLMLGQLQ 370 (632)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 87799988988427799998606668
No 361
>KOG1191 consensus
Probab=96.78 E-value=0.00096 Score=42.49 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=37.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCC--CCCCCCCCCCC
Q ss_conf 8999889999989999999851898179986118889998--32355300012
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVD--EKQYIDYRFIS 54 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~--E~~g~dY~Fvs 54 (185)
=|+|+||+.|||++|.|.|...+-.+.-+++-|||-.=.- +.||.--+-++
T Consensus 270 ~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~D 322 (531)
T KOG1191 270 QIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSD 322 (531)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCHHHHEEEEECCCEEEEEEE
T ss_conf 28997699877889998875077447678999641001227630875899973
No 362
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.77 E-value=0.0017 Score=41.01 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=17.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|..+.|+||+|||||||++-|...
T Consensus 27 Ge~vgLVG~NGsGKSTLlklL~G~ 50 (638)
T PRK10636 27 GQKVGLVGKNGCGKSTLLALLKNE 50 (638)
T ss_pred CCEEEEECCCCCHHHHHHHHHCCC
T ss_conf 989999889998899999998089
No 363
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.77 E-value=0.0011 Score=42.19 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=17.6
Q ss_pred CCEEEEECCCCCCHHHHHHHH
Q ss_conf 718999889999989999999
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQV 22 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L 22 (185)
|.++.|+||||||||||+-.+
T Consensus 21 Ge~~aIvG~nGsGKSTL~~~~ 41 (226)
T cd03270 21 NKLVVITGVSGSGKSSLAFDT 41 (226)
T ss_pred CCEEEEECCCCCHHHHHHHHH
T ss_conf 989999878996098983616
No 364
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.0027 Score=39.87 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=45.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC--CCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEE
Q ss_conf 7189998899999899999998518981799861188899983--23553000123542111027636445550486055
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDE--KQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYG 79 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E--~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YG 79 (185)
|-+-+|+||-|||||||+..|+. .|..... .|+ -||+| |+.-+-++....|-|+-| ++--..=|
T Consensus 30 GEvhaiMGPNGsGKSTLa~~i~G-~p~Y~Vt---------~G~I~~~Ged---I~~l~~~ERAr~GifLaf-Q~P~ei~G 95 (251)
T COG0396 30 GEVHAIMGPNGSGKSTLAYTIMG-HPKYEVT---------EGEILFDGED---ILELSPDERARAGIFLAF-QYPVEIPG 95 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC-CCCCEEE---------CCEEEECCCC---CCCCCHHHHHHCCCEEEE-CCCCCCCC
T ss_conf 82899988998788999999728-9974675---------5569987854---255998688861877651-17754778
Q ss_pred EECC
Q ss_conf 4432
Q gi|254781197|r 80 YLKE 83 (185)
Q Consensus 80 t~~~ 83 (185)
.+..
T Consensus 96 V~~~ 99 (251)
T COG0396 96 VTNS 99 (251)
T ss_pred EEHH
T ss_conf 0099
No 365
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=96.75 E-value=0.00066 Score=43.42 Aligned_cols=45 Identities=18% Similarity=0.258 Sum_probs=33.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC--C-EEEEEEEC---CCCCCCCCCCCCC
Q ss_conf 899988999998999999985189--8-17998611---8889998323553
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSE--Y-LVMPVGVT---TRRPRVDEKQYID 49 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~--~-~~~~is~T---TR~~R~~E~~g~d 49 (185)
||.|+|+|+||||||+.+|..... + -...|=|. +-.++-+. +|+|
T Consensus 1 v~~i~G~k~SGKTtL~~~l~~~L~~~Gy~V~~IKH~ghG~H~~~~d~-~GkD 51 (165)
T TIGR00176 1 VLQIVGYKNSGKTTLIERLVKALKARGYRVATIKHDGHGHHDFDIDK-EGKD 51 (165)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEECC-CCCC
T ss_conf 93789625886789999999999707995089860898887565279-9873
No 366
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.75 E-value=0.00083 Score=42.84 Aligned_cols=49 Identities=16% Similarity=0.337 Sum_probs=38.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 8999889999989999999851898179986118889998323553000
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRF 52 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~F 52 (185)
+++|+|.+-||||||.++|..+...+.-..+.|||-...+...-.++.|
T Consensus 1 ~VaIvGrpNVGKStLfN~L~~~~~aIv~~~~G~TRD~~~~~~~~~~~~~ 49 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRKYGDAEWGGREF 49 (429)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCEEEEEEECCEEE
T ss_conf 9899999998789999998788617615989988773379999999079
No 367
>pfam02421 FeoB_N Ferrous iron transport protein B. Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=96.75 E-value=0.0012 Score=41.94 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=36.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC--CCCCCCCCHHH
Q ss_conf 999889999989999999851898179986118889998323--55300012354
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQ--YIDYRFISQSQ 57 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~--g~dY~Fvs~e~ 57 (185)
+.|+|++.+|||||.|+|+.... ..-..+-|||-+..+... |..+.||+-.-
T Consensus 2 VaIvG~PNvGKSTLlN~L~g~~~-~Vs~~pGtTrd~~~~~~~~~~~~~~lvDTpG 55 (188)
T pfam02421 2 IALVGNPNVGKTTLFNALTGARQ-HVGNWPGVTVEKKEGTFKYKGYEIEIVDLPG 55 (188)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-EEECCCCCCCCEEEEEEEECCEEEEEEECCC
T ss_conf 89988999899999999959996-5638999723335768752516799996888
No 368
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.75 E-value=0.0022 Score=40.41 Aligned_cols=30 Identities=27% Similarity=0.534 Sum_probs=24.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC-EEE
Q ss_conf 718999889999989999999851898-179
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEY-LVM 31 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~-~~~ 31 (185)
|.|+|++||.|+|||+|.+.+.+.... |..
T Consensus 349 g~IlclvGpPGvGKTSl~~sIA~al~r~f~r 379 (784)
T PRK10787 349 GPILCLVGPPGVGKTSLGQSIAKATGRKYVR 379 (784)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 8779964699877246999999985898699
No 369
>COG1160 Predicted GTPases [General function prediction only]
Probab=96.74 E-value=0.0011 Score=42.08 Aligned_cols=87 Identities=18% Similarity=0.287 Sum_probs=53.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCC--CCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEEEC
Q ss_conf 999889999989999999851898179986118889998--323553000123542111027636445550486055443
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVD--EKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLK 82 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~--E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt~~ 82 (185)
|.|+|-.-+||+||.|.|+.+.--+.-.++-|||-+=.. |.+|..|.||+-.-..+..+-.+=+|+ |.+.+
T Consensus 181 iaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~-------~Sv~r 253 (444)
T COG1160 181 IAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEK-------YSVAR 253 (444)
T ss_pred EEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCEEE-------EEEHH
T ss_conf 99992787870588877506825984599986220331258998818999987787746641242688-------75054
Q ss_pred CCHHHHHHHCCCCCCCCC
Q ss_conf 200233320123200243
Q gi|254781197|r 83 EDINNPMEHGYDILLILT 100 (185)
Q Consensus 83 ~~i~~~~~~g~~~il~id 100 (185)
+ ..++..-.+|++.+|
T Consensus 254 -t-~~aI~~a~vvllviD 269 (444)
T COG1160 254 -T-LKAIERADVVLLVID 269 (444)
T ss_pred -H-HHHHHHCCEEEEEEE
T ss_conf -6-767865688999998
No 370
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=96.74 E-value=0.0024 Score=40.11 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.++||+||||||+++-|+...
T Consensus 31 Gei~gllG~NGAGKTTllk~l~Gl~ 55 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGLL 55 (293)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9599998999998999999996797
No 371
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.74 E-value=0.0012 Score=41.90 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=26.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC-EEEEEEECCCCC
Q ss_conf 999889999989999999851898-179986118889
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEY-LVMPVGVTTRRP 40 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~-~~~~is~TTR~~ 40 (185)
|.|+|++.+|||||.+.|+.+..- ..-.++-|||.+
T Consensus 2 IaivG~pN~GKSTL~N~L~~~~~~~~vs~~~gtTr~i 38 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLI 38 (170)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCEEEEECCCCEEEEE
T ss_conf 8999899999999999996899627860789778520
No 372
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.73 E-value=0.0031 Score=39.50 Aligned_cols=41 Identities=24% Similarity=0.301 Sum_probs=26.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC--CEEEEEEECCCCCCCC
Q ss_conf 71899988999998999999985189--8179986118889998
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE--YLVMPVGVTTRRPRVD 43 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~--~~~~~is~TTR~~R~~ 43 (185)
..=|.|+||.||||+|++.++.+... ++... -.-|-..|.|
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg-Gf~t~EVR~g 47 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVG-GFITPEVREG 47 (179)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEE-EEEEEEEECC
T ss_conf 459998679984589999999999985596651-3983114208
No 373
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.72 E-value=0.00053 Score=44.01 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||.||||||+++-|+.-.
T Consensus 31 Gei~gllG~NGaGKSTllk~i~Gl~ 55 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8299999999984999999997797
No 374
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.72 E-value=0.0019 Score=40.73 Aligned_cols=51 Identities=12% Similarity=0.101 Sum_probs=33.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCC---CCCCCCCCCH
Q ss_conf 899988999998999999985189817998611888999832---3553000123
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEK---QYIDYRFISQ 55 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~---~g~dY~Fvs~ 55 (185)
.+.|+|++.||||||.++|..... .....+.|||-|..+.. +|..+.|++-
T Consensus 43 ~VaivG~PNvGKSTLlN~L~g~~~-~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT 96 (204)
T cd01878 43 TVALVGYTNAGKSTLFNALTGADV-YAEDQLFATLDPTTRRLRLPDGREVLLTDT 96 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC-EEECCCCCCCCCEEEEEEECCCCEEEEEEC
T ss_conf 799988999989999999948996-341567764576366899569977999836
No 375
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.72 E-value=0.0014 Score=41.46 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+||+||||||+++-|+.-
T Consensus 47 Gei~gLlGpNGaGKSTllk~l~Gl 70 (236)
T cd03267 47 GEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 959999999983099999999649
No 376
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.72 E-value=0.0015 Score=41.29 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
|++.+|.||-|||||||.+.|..
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~~ 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
T ss_conf 97999989988899999999865
No 377
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.72 E-value=0.0028 Score=39.78 Aligned_cols=66 Identities=20% Similarity=0.170 Sum_probs=42.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 718999889999989999999851898179986118889998323553000123542111027636445550486
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDE 76 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~ 76 (185)
|.++-|+|-|||||+|+.+.|.....--...+.|.+|.-.+- |-|-.++.+=..+.. -||+.+|-|
T Consensus 32 GeVLgiVGESGSGKtTlL~~is~rl~p~~G~v~Y~~r~~~~~-----dl~~msEaeRR~L~R----TeWG~VhQn 97 (258)
T COG4107 32 GEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPR-----DLYTMSEAERRRLLR----TEWGFVHQN 97 (258)
T ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCH-----HHHHHCHHHHHHHHH----HCCCEEECC
T ss_conf 737999705887577699998645688777378984899702-----276645488887765----003415017
No 378
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.71 E-value=0.00055 Score=43.89 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.+.||.||||||+.+-+..-.
T Consensus 26 Gei~gllGpNGAGKSTll~~i~Gl~ 50 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 8399999999871999999997697
No 379
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.71 E-value=0.0014 Score=41.53 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=19.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
+++..++||||+||+|+.+-|-.
T Consensus 33 ~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 33 NKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 80699888988678889999875
No 380
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.71 E-value=0.002 Score=40.56 Aligned_cols=40 Identities=20% Similarity=0.163 Sum_probs=27.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC-EEEEEEECCCCCC
Q ss_conf 718999889999989999999851898-1799861188899
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEY-LVMPVGVTTRRPR 41 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~-~~~~is~TTR~~R 41 (185)
++=|+|+|+.||||||+++.|+...|. -..++==.|+.-.
T Consensus 162 r~NIlIsGgTGSGKTTllnALl~~IP~~eRIvtIEDt~EL~ 202 (343)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELV 202 (343)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCC
T ss_conf 98899988898619999999996289655279961150025
No 381
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.71 E-value=0.0004 Score=44.71 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||.|||||||++-|..-.
T Consensus 26 Gei~gllG~NGaGKSTLl~~i~Gl~ 50 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8199999999999999999995783
No 382
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.70 E-value=0.0022 Score=40.43 Aligned_cols=28 Identities=25% Similarity=0.397 Sum_probs=22.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 1899988999998999999985189817
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQVVLNSEYLV 30 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L~~~~~~~~ 30 (185)
-+|.|=|||||||+|+++.|.++.....
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~y 32 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHY 32 (222)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 4999768875684789999999809866
No 383
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=96.70 E-value=0.0017 Score=41.05 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=22.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 18999889999989999999851898179
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQVVLNSEYLVM 31 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L~~~~~~~~~ 31 (185)
+|.+|.||+|+||||.++.|.++. ++..
T Consensus 46 ~iLlLtGPaG~GKTTTI~lLAkeL-G~ei 73 (490)
T pfam03215 46 LILLLTGPSGCGKSTTVKVLSKEL-GIEI 73 (490)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH-CCEE
T ss_conf 189987989988999999999975-9689
No 384
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.70 E-value=0.0027 Score=39.89 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|.||+||||||+++-+..-.
T Consensus 26 Gei~~llGpNGAGKSTll~~i~Gl~ 50 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9599999999961999999997799
No 385
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.69 E-value=0.0015 Score=41.35 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=18.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 18999889999989999999851
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
+++.++||.||||||-+-+|..+
T Consensus 224 kvi~lVGPTGVGKTTTiAKLAA~ 246 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 29999899998889999999999
No 386
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=96.69 E-value=0.0013 Score=41.68 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=26.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEE--EEEECCCCC
Q ss_conf 8999889999989999999851898179--986118889
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLVM--PVGVTTRRP 40 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~~--~is~TTR~~ 40 (185)
-|+|+|.+.||||||.|.|+.+. .+.. ..+-|||..
T Consensus 20 ~IaivGrpNvGKSTL~N~L~g~k-~~a~vs~~pGtTr~i 57 (179)
T TIGR03598 20 EIAFAGRSNVGKSSLINALTNRK-KLARTSKTPGRTQLI 57 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CEEEECCCCCEEEEC
T ss_conf 89998699988899999986898-558970899736602
No 387
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.003 Score=39.61 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=20.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|..+-|+|||||||+||++.|+.-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 978999848989888999999565
No 388
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=96.68 E-value=0.0013 Score=41.66 Aligned_cols=104 Identities=22% Similarity=0.375 Sum_probs=56.2
Q ss_pred EEEEECCCCCCH-HHHHHHHHH-HCC--CEEEEEEECCCCCCCCCCCCCCCCC--CCHHHHHHHCCCCEEEEEEEECCCE
Q ss_conf 899988999998-999999985-189--8179986118889998323553000--1235421110276364455504860
Q gi|254781197|r 4 IFVLIGASGVGE-TTIAKQVVL-NSE--YLVMPVGVTTRRPRVDEKQYIDYRF--ISQSQFKGWKHTGLFIETTKVRDEY 77 (185)
Q Consensus 4 iivi~GpSGsGK-~tl~~~L~~-~~~--~~~~~is~TTR~~R~~E~~g~dY~F--vs~e~F~~~i~~g~flE~~~~~g~~ 77 (185)
||.++||.|||| |||+-.|.+ +.+ ++-.+ .|=++|-- |++-+.+..|. +
T Consensus 247 IiLVTGPTGSGKtTTLYaaL~~LN~~~~NIlTv------------EDPVEY~i~GIgQ~Qvn~kIg----l--------- 301 (495)
T TIGR02533 247 IILVTGPTGSGKTTTLYAALSRLNTPERNILTV------------EDPVEYQIEGIGQIQVNPKIG----L--------- 301 (495)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEE------------ECCEEEEECCCCEEEECCCCC----H---------
T ss_conf 188417789852588999998635899715686------------578247624876365146543----0---------
Q ss_pred EEEECCCHHHHHHHCCCCCCC-------------------------CCCCCHH-HHHHCCCCCHHHHHHCCCCHH-HHHH
Q ss_conf 554432002333201232002-------------------------4310001-332105531011222133289-9999
Q gi|254781197|r 78 YGYLKEDINNPMEHGYDILLI-------------------------LTHQGLA-PLKKLYEDQVTSIFIAPPSEA-ELIQ 130 (185)
Q Consensus 78 YGt~~~~i~~~~~~g~~~il~-------------------------id~~G~~-~lk~~~~~~~~~IfI~pps~~-~L~~ 130 (185)
|--.+++..+.+.-++||+ ++.|-|. ++-......+-+ |+.+.|.. .|.+
T Consensus 302 --TFA~GLRaILRQDPDiiMvGEIRD~ETA~IAiQASLTGHLVLSTLHTNDAAgAvtRL~DMGvEP-FL~aSsl~GVLAQ 378 (495)
T TIGR02533 302 --TFAAGLRAILRQDPDIIMVGEIRDLETAQIAIQASLTGHLVLSTLHTNDAAGAVTRLIDMGVEP-FLLASSLLGVLAQ 378 (495)
T ss_pred --HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHH
T ss_conf --3888878864279988998231606899999987643257655655401544665553258640-4899999999986
Q ss_pred HHHHC
Q ss_conf 88630
Q gi|254781197|r 131 RRIKR 135 (185)
Q Consensus 131 RL~~R 135 (185)
||++|
T Consensus 379 RLVRr 383 (495)
T TIGR02533 379 RLVRR 383 (495)
T ss_pred HHHHH
T ss_conf 33433
No 389
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.0026 Score=39.97 Aligned_cols=84 Identities=23% Similarity=0.404 Sum_probs=45.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC--EEEEEEECCCCCC-CCCCCCCCCCCCCH---HHHHHHCCCCE----EE--E
Q ss_conf 718999889999989999999851898--1799861188899-98323553000123---54211102763----64--4
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEY--LVMPVGVTTRRPR-VDEKQYIDYRFISQ---SQFKGWKHTGL----FI--E 69 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~--~~~~is~TTR~~R-~~E~~g~dY~Fvs~---e~F~~~i~~g~----fl--E 69 (185)
|.|+|++||.|+|||+|.+.+.+.... +.+++- -.| +.|+-|.---+|.. --.+.|.+.|. |+ |
T Consensus 350 GpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLG----GvrDEAEIRGHRRTYIGaMPGrIiQ~mkka~~~NPv~LLDE 425 (782)
T COG0466 350 GPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLG----GVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDE 425 (782)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECC----CCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEC
T ss_conf 85799978998870118999999958977999547----65427775355312335687289999998677687478640
Q ss_pred EEEECCCEEEEECCCHHHHH
Q ss_conf 55504860554432002333
Q gi|254781197|r 70 TTKVRDEYYGYLKEDINNPM 89 (185)
Q Consensus 70 ~~~~~g~~YGt~~~~i~~~~ 89 (185)
-......|.|-+-+++-+++
T Consensus 426 IDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 426 IDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred HHHCCCCCCCCHHHHHHHHC
T ss_conf 33316777788688888626
No 390
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.66 E-value=0.0026 Score=39.92 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||+|||||||++-|+.-.
T Consensus 26 Gei~gl~G~NGaGKSTLl~~i~Gl~ 50 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9399998789979999999997685
No 391
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.65 E-value=0.0015 Score=41.37 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 899988999998999999985
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~ 24 (185)
||-|+|+|||||||+++.|.+
T Consensus 1 IIGIaG~sgSGKST~a~~l~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEEECCCCCCHHHHHHHHHH
T ss_conf 989788998779999999999
No 392
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.65 E-value=0.0024 Score=40.16 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|..+.|+||+|+|||||++-|....
T Consensus 33 Ge~vgLvG~NGaGKSTLlriLaG~~ 57 (556)
T PRK11819 33 GAKIGVLGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999999971999999984799
No 393
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.64 E-value=0.0021 Score=40.53 Aligned_cols=27 Identities=22% Similarity=0.503 Sum_probs=23.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 718999889999989999999851898
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEY 28 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~ 28 (185)
+..+.|.||+|+||||+++.|+.+...
T Consensus 2 ~~~ill~G~~GsGKTtl~~~la~~~~~ 28 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 978999999970299999999987266
No 394
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.64 E-value=0.0017 Score=40.97 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=19.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
|+++.+.||||||||||.+-+..
T Consensus 28 Ge~vaLlGpSGaGKsTlLRiIAG 50 (345)
T COG1118 28 GELVALLGPSGAGKSTLLRIIAG 50 (345)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
T ss_conf 86899977898767889999857
No 395
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=96.64 E-value=0.0015 Score=41.37 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=33.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf 189998899999899999998518981799861188899
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPR 41 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R 41 (185)
-=++|+|++.+|||+|.|.|+.++--+...|+-|||--=
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDvi 256 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVI 256 (454)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCEE
T ss_conf 649998799886799999886678667428999741037
No 396
>KOG0057 consensus
Probab=96.64 E-value=0.0025 Score=40.04 Aligned_cols=77 Identities=12% Similarity=0.131 Sum_probs=48.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCC---CCEEEEEEEE-CCCE
Q ss_conf 71899988999998999999985189817998611888999832355300012354211102---7636445550-4860
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKH---TGLFIETTKV-RDEY 77 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~---~g~flE~~~~-~g~~ 77 (185)
|+=+.|+|+|||||+|+.+.|+.-++ -...|. +||+|-.=++.+.+.++|. ++.-|-..++ +.-.
T Consensus 378 GekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~----------IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~ 446 (591)
T KOG0057 378 GEKVAIVGSNGSGKSTILRLLLRFFD-YSGSIL----------IDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIK 446 (591)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC-CCCCEE----------ECCEEHHHHCHHHHHHHEEEECCCCCCCCHHHHHHHH
T ss_conf 97898978999878899999999744-688599----------9873376507577652216767766430065998863
Q ss_pred EEEECCCHHHHH
Q ss_conf 554432002333
Q gi|254781197|r 78 YGYLKEDINNPM 89 (185)
Q Consensus 78 YGt~~~~i~~~~ 89 (185)
||-+..+-+++.
T Consensus 447 YGn~sas~eeV~ 458 (591)
T KOG0057 447 YGNPSASDEEVV 458 (591)
T ss_pred CCCCCCCHHHHH
T ss_conf 289876889999
No 397
>PTZ00243 ABC transporter; Provisional
Probab=96.63 E-value=0.0031 Score=39.52 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=25.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 71899988999998999999985189817998
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPV 33 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~i 33 (185)
|++.+|+||.||||+||...|+.+.+.....|
T Consensus 686 G~L~~IvG~vGSGKSSLL~aiLGE~~~~~G~v 717 (1560)
T PTZ00243 686 GKLTVVLGATGSGKSTLLQSLLSQFEISEGRV 717 (1560)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf 97899989999879999999968884356389
No 398
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.63 E-value=0.0017 Score=41.03 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+||+|+|||||++.|..-
T Consensus 26 Gei~gliG~nGaGKSTL~~~i~Gl 49 (236)
T cd03219 26 GEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999989997399999999679
No 399
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.63 E-value=0.0027 Score=39.85 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
.+-++|.||+|+|||++++.+.+..
T Consensus 19 ~~~ill~GppGtGKT~la~~ia~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9808998999988659999999971
No 400
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.62 E-value=0.004 Score=38.84 Aligned_cols=25 Identities=20% Similarity=0.501 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 1899988999998999999985189
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
-+.+|+|+.|+||||+.+.|+++.+
T Consensus 44 g~~lltGe~GtGKTtllr~l~~~l~ 68 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 6599972998988999999998459
No 401
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.62 E-value=0.0033 Score=39.34 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+||+|+|||||++.+..-
T Consensus 28 Gei~~liGpNGaGKSTLl~~i~Gl 51 (242)
T TIGR03411 28 GELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999989997599999999679
No 402
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.62 E-value=0.0027 Score=39.83 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=26.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCE-EEEEEECCCC
Q ss_conf 189998899999899999998518981-7998611888
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQVVLNSEYL-VMPVGVTTRR 39 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L~~~~~~~-~~~is~TTR~ 39 (185)
+=|+|+|+.||||||+++.|+...|.- ..++-=.|+.
T Consensus 161 ~NilI~G~TgSGKTTll~aL~~~ip~~eRiitIEDt~E 198 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDARE 198 (332)
T ss_pred CCEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCHH
T ss_conf 71999888898899999999835895353566314066
No 403
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=96.61 E-value=0.002 Score=40.57 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=30.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC
Q ss_conf 999889999989999999851898179986118889998323
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQ 46 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~ 46 (185)
+.|+|++.||||||.+.|....+.. ...+-|||-|-.|...
T Consensus 3 VAiiG~pNvGKSTLlN~l~~~~~~V-~~~pgTT~~~~~g~i~ 43 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNAKPKI-ADYPFTTLVPNLGVVR 43 (170)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCEE-ECCCCCCCCCEEEEEE
T ss_conf 8998999998999999996787603-2566652374477999
No 404
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=96.59 E-value=0.0015 Score=41.39 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=39.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC--CCCCCCCCHH
Q ss_conf 18999889999989999999851898179986118889998323--5530001235
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQ--YIDYRFISQS 56 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~--g~dY~Fvs~e 56 (185)
.+++|+|.+-|||+||.++|+.+...+.-..+.|||-...+... |..+.+|+-.
T Consensus 2 p~VaIvGrpNvGKStLfN~l~~~~~aIv~~~~G~TRD~~~~~~~~~~~~~~lvDT~ 57 (438)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFIVIDTG 57 (438)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 98999899998789999998688618715989998471589999999289999897
No 405
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.58 E-value=0.0034 Score=39.28 Aligned_cols=24 Identities=38% Similarity=0.697 Sum_probs=19.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
+++++++||+||||||-+-+|...
T Consensus 174 ~~vi~lVGPTGvGKTTTiAKLAa~ 197 (388)
T PRK12723 174 KRIFILVGPTGVGKTTTIAKLAAI 197 (388)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 628999899887578799999999
No 406
>KOG1970 consensus
Probab=96.58 E-value=0.0011 Score=42.25 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
++|..|+||||+||+|-++.|++...
T Consensus 110 ~~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970 110 SRILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 60799857988871319999998648
No 407
>PRK06851 hypothetical protein; Provisional
Probab=96.57 E-value=0.0022 Score=40.41 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
.|||+|-|++|+||||+++++.+.
T Consensus 31 ~ri~ilKGGpGtGKStlmK~ig~~ 54 (368)
T PRK06851 31 NRIFILKGGPGTGKSTLMKKIGEE 54 (368)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 279999689997789999999999
No 408
>PRK04213 GTP-binding protein; Provisional
Probab=96.57 E-value=0.0015 Score=41.32 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=26.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf 8999889999989999999851898179986118889
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRP 40 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~ 40 (185)
.+.|+|-+.||||||.+.|+.+... .-..+-|||-+
T Consensus 3 ~VaivGRpNVGKSTL~N~L~g~k~~-vs~~pg~Tr~~ 38 (195)
T PRK04213 3 EIIFVGRSNVGKSTLIRALTGKKVR-VGKRPGVTLKP 38 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCEEEEE
T ss_conf 7999769998899999999689851-34899648734
No 409
>KOG0055 consensus
Probab=96.56 E-value=0.0029 Score=39.64 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|+-+.|+|||||||+|++..|..-++
T Consensus 1016 GqTvALVG~SGsGKSTvI~LLeRfYd 1041 (1228)
T KOG0055 1016 GQTVALVGPSGSGKSTVISLLERFYD 1041 (1228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 98899988998879989999998438
No 410
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=96.56 E-value=0.0027 Score=39.86 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 97189998899999899999998518981799
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSEYLVMP 32 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~ 32 (185)
+.|=|.++||+|||||.|+++|.+- -+.+|+
T Consensus 49 ~pkNILmIGPTGvGKTeIARrLAkl-~~aPFv 79 (442)
T PRK05201 49 TPKNILMIGPTGVGKTEIARRLAKL-ANAPFI 79 (442)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHH-HCCCEE
T ss_conf 6431688788886678999999998-489858
No 411
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.53 E-value=0.0038 Score=39.00 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=23.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 999889999989999999851898179986118
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEYLVMPVGVTT 37 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TT 37 (185)
+++.||+|+||||+++-|.+....-....+.|+
T Consensus 40 ~Il~GPPG~GKTTlA~iiA~~~~~~f~~lnA~~ 72 (417)
T PRK13342 40 MILWGPPGTGKTTLARIIAGATDAEFEALSAVT 72 (417)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 998896999899999999998689889961410
No 412
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491 This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome. ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=96.53 E-value=0.002 Score=40.66 Aligned_cols=30 Identities=30% Similarity=0.630 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH--HCCCEE
Q ss_conf 971899988999998999999985--189817
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVL--NSEYLV 30 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~--~~~~~~ 30 (185)
|+|=|+.+||+|+|||.|+++|.+ +-|.++
T Consensus 46 ~PKNILMiGpTGVGKTEIARRlAKL~~aPFiK 77 (463)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIK 77 (463)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCCEE
T ss_conf 87430432788985447999999984489146
No 413
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.52 E-value=0.0025 Score=40.01 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.+++++|+|||||+||++.|....
T Consensus 443 ~~~iw~tGlsgsGKstiA~~le~~L 467 (613)
T PRK05506 443 PATVWFTGLSGSGKSTIANLVERRL 467 (613)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7699997789897479999999999
No 414
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.52 E-value=0.0024 Score=40.14 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||+|||||||.+-+..-.
T Consensus 48 GeivgilG~NGaGKSTLl~~i~Gl~ 72 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999799981999999997587
No 415
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.52 E-value=0.0029 Score=39.71 Aligned_cols=26 Identities=23% Similarity=0.357 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|-.+.|+||+|||||||++.|+...+
T Consensus 338 GeriaIvG~NGsGKSTLlk~L~G~l~ 363 (638)
T PRK10636 338 GSRIGLLGRNGAGKSTLIKLLAGELA 363 (638)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 84799974787138899999728878
No 416
>PRK03918 chromosome segregation protein; Provisional
Probab=96.51 E-value=0.0022 Score=40.37 Aligned_cols=22 Identities=23% Similarity=0.602 Sum_probs=19.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 7189998899999899999998
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVV 23 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~ 23 (185)
+-|++|+||.|||||||...++
T Consensus 23 ~Gi~~I~G~nGsGKStIlDAI~ 44 (882)
T PRK03918 23 SGINLIIGQNGSGKSSLLDAIL 44 (882)
T ss_pred CCCEEEECCCCCCHHHHHHHHH
T ss_conf 9927988999998899999999
No 417
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.51 E-value=0.0041 Score=38.79 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=24.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 999889999989999999851898179986118
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEYLVMPVGVTT 37 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TT 37 (185)
+|+-||+|+|||||++-+.+....-....+.||
T Consensus 55 ~Il~GPPGtGKTTLA~iIA~~t~~~F~~lsAv~ 87 (726)
T PRK13341 55 LILYGPPGVGKTTLARIIANHTRAHFSSLNAVL 87 (726)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 788897999999999999887488679985620
No 418
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=96.51 E-value=0.0026 Score=39.97 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=14.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
|-++-|+|+||||||||++.|+.
T Consensus 317 GE~lglVGeSGsGKSTlar~i~g 339 (539)
T COG1123 317 GETLGLVGESGSGKSTLARILAG 339 (539)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
T ss_conf 87899988999998999999948
No 419
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.50 E-value=0.0038 Score=38.96 Aligned_cols=24 Identities=25% Similarity=0.569 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
| ++.|+||.||||||+++-|..-.
T Consensus 26 G-i~gllGpNGAGKSTll~~i~Gl~ 49 (211)
T cd03264 26 G-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred C-EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 7-59999999823999999997596
No 420
>COG0645 Predicted kinase [General function prediction only]
Probab=96.49 E-value=0.024 Score=34.35 Aligned_cols=147 Identities=16% Similarity=0.171 Sum_probs=71.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCC---CC---CCCCCCCCCHHHHHHHCCCCEEEEEEEECC
Q ss_conf 718999889999989999999851898179986118889998---32---355300012354211102763644555048
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVD---EK---QYIDYRFISQSQFKGWKHTGLFIETTKVRD 75 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~---E~---~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g 75 (185)
++++++.|-||+||+|++..|.+..+-..+. |-.-|+.=-| +. .|.-+-=++... ++
T Consensus 1 ~~l~l~~Gl~GsGKstlA~~l~~~lgA~~lr-sD~irk~L~g~p~~~r~~~g~ys~~~~~~v----------------y~ 63 (170)
T COG0645 1 GRLVLVGGLPGSGKSTLARGLAELLGAIRLR-SDVIRKRLFGVPEETRGPAGLYSPAATAAV----------------YD 63 (170)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCEEEE-HHHHHHHHCCCCCCCCCCCCCCCHHHHHHH----------------HH
T ss_conf 9479972588865868878988534866874-178998723886101488788767889999----------------99
Q ss_pred CEEEEECCCHHHHHHHCCCCCCCCCCCC--HH----HHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCC---HHHHHHH
Q ss_conf 6055443200233320123200243100--01----3321055310112221332899999886303420---7899999
Q gi|254781197|r 76 EYYGYLKEDINNPMEHGYDILLILTHQG--LA----PLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDT---PFNLDPD 146 (185)
Q Consensus 76 ~~YGt~~~~i~~~~~~g~~~il~id~~G--~~----~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~d~---~~~i~~r 146 (185)
..|+ --...+..|..+++|-...- -+ .+-+..+-.+..|....| .+++..|+..|..|. ...+.+.
T Consensus 64 ~l~~----~A~l~l~~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap-~~v~~~rl~aR~~d~sDA~~~il~~ 138 (170)
T COG0645 64 ELLG----RAELLLSSGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAP-EEVLRGRLAARKGDASDATFDILRV 138 (170)
T ss_pred HHHH----HHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCC-HHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 9998----8999996799189844337888899999987503885488875882-9999989998179965132899999
Q ss_pred HHHHH---HCCCEEEECCCHHHHHHHH
Q ss_conf 99876---3698899939789999999
Q gi|254781197|r 147 LFGKN---HSYSFTIVNNHLPTACRQV 170 (185)
Q Consensus 147 l~~~~---~~fD~~IvNddle~a~~~l 170 (185)
..... .+++...++...+....++
T Consensus 139 q~~~~~~~~~~~~~~~~~~~~~~~~~l 165 (170)
T COG0645 139 QLAEDEPWTEWETADTDTARTRDVSQL 165 (170)
T ss_pred HHHHHCCCCCCCCHHHCCCCCCCHHHH
T ss_conf 986307853431022215663328999
No 421
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.49 E-value=0.0026 Score=39.92 Aligned_cols=22 Identities=23% Similarity=0.521 Sum_probs=19.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 7189998899999899999998
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVV 23 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~ 23 (185)
|++++|+||.|+||||+++.+.
T Consensus 21 g~~~iItGpN~sGKSt~Lr~i~ 42 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIG 42 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 8689998998775799999999
No 422
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.48 E-value=0.0024 Score=40.16 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=19.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
+++|+|+||.||||||-.-+|...+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~ 227 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARY 227 (407)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8579998998875887999999999
No 423
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=96.46 E-value=0.0056 Score=38.01 Aligned_cols=23 Identities=22% Similarity=0.559 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99988999998999999985189
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
+++.||+|+|||++++.+++...
T Consensus 2 vll~Gp~G~GKT~la~~la~~l~ 24 (139)
T pfam07728 2 VLLVGPPGTGKSELAERLAAALS 24 (139)
T ss_pred EEEECCCCCHHHHHHHHHHHHCC
T ss_conf 89998997569999999999807
No 424
>PRK00454 engB GTPase EngB; Reviewed
Probab=96.45 E-value=0.0021 Score=40.49 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=25.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEE--EEEECCCC
Q ss_conf 999889999989999999851898179--98611888
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEYLVM--PVGVTTRR 39 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~~~~--~is~TTR~ 39 (185)
++|+|.+-||||||.|.|+.+. .+.. ..|.|||-
T Consensus 27 VaivGrpNvGKSTL~N~L~g~k-~~a~vs~~pgtTr~ 62 (196)
T PRK00454 27 IAFAGRSNVGKSSLINALTNRK-NLARTSKTPGRTQL 62 (196)
T ss_pred EEEECCCCCCHHHHHHHHHCCC-CEEEEECCCCCEEE
T ss_conf 9998489888999999986897-36997478886079
No 425
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=96.44 E-value=0.0046 Score=38.50 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCE
Q ss_conf 9998899999899999998518981
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEYL 29 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~~ 29 (185)
+.|+||||+||++++=+|+++-..+
T Consensus 148 VLItG~SG~GKSElALeLi~rghrL 172 (308)
T COG1493 148 VLITGPSGAGKSELALELIKRGHRL 172 (308)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCE
T ss_conf 9998789887768999999845501
No 426
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.43 E-value=0.0017 Score=41.02 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=25.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 99988999998999999985189817998611888
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRR 39 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~ 39 (185)
+.++|.++||||||.|.|..+.--....++.|||-
T Consensus 104 v~ivG~PNVGKSTLIN~L~~~~~~~v~~~pGtTr~ 138 (156)
T cd01859 104 VGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKG 138 (156)
T ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCEECC
T ss_conf 99981478459899999748813777599980705
No 427
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.41 E-value=0.0033 Score=39.34 Aligned_cols=22 Identities=27% Similarity=0.756 Sum_probs=19.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 7189998899999899999998
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVV 23 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~ 23 (185)
+-|++|+||.|||||||...++
T Consensus 25 ~gi~lI~G~nGsGKSSIldAI~ 46 (908)
T COG0419 25 SGIFLIVGPNGAGKSSILDAIT 46 (908)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 8837998999997889999999
No 428
>PRK09183 transposase/IS protein; Provisional
Probab=96.40 E-value=0.002 Score=40.59 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=18.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 18999889999989999999851
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
.=++++||+|+|||.|+-.|..+
T Consensus 102 ~Nvil~G~~GtGKThLA~Alg~~ 124 (258)
T PRK09183 102 ENIVLLGPSGVGKTHLAIALGYE 124 (258)
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
T ss_conf 86799899998689999999999
No 429
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.39 E-value=0.0031 Score=39.48 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|-.+.|+||+|+|||||++.|+...+
T Consensus 350 Ge~iaivG~NGsGKSTLlk~l~G~~~ 375 (556)
T PRK11819 350 GGIVGIIGPNGAGKSTLFKMITGQEQ 375 (556)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 82478988987758899999838656
No 430
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=96.39 E-value=0.0054 Score=38.08 Aligned_cols=26 Identities=15% Similarity=0.428 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|.++.|+||+|||||||++.|+...|
T Consensus 286 GE~~~i~G~nGsGKSTLl~~l~G~~p 311 (490)
T PRK10938 286 GEHWQIVGPNGAGKSTLLSLITGDHP 311 (490)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 98899986788879999999808897
No 431
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.39 E-value=0.003 Score=39.60 Aligned_cols=20 Identities=35% Similarity=0.790 Sum_probs=10.2
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99988999998999999985
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~ 24 (185)
|.++||||||||.+++.|.+
T Consensus 601 FLFlGPTGVGKTElAK~LA~ 620 (857)
T PRK10865 601 FLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99868987888999999999
No 432
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.38 E-value=0.0029 Score=39.68 Aligned_cols=74 Identities=14% Similarity=0.279 Sum_probs=39.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHH----CCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEE
Q ss_conf 8999889999989999999851----898179986118889998323553000123542111027636445550486055
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLN----SEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYG 79 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~----~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YG 79 (185)
||.++||.||||||=+-.++.. .+.--..| .|=++|.|-++..+ |.+-+.=+.+.= |
T Consensus 129 LiLVTGPTGSGKSTTlAsmIDyIN~~~~~HIiTI-----------EDPIEyvh~~~~sl---i~QREvG~DT~s---F-- 189 (350)
T TIGR01420 129 LILVTGPTGSGKSTTLASMIDYINKNKAGHIITI-----------EDPIEYVHKNKRSL---INQREVGLDTLS---F-- 189 (350)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEE-----------ECCEEEEECCCEEE---EECCCCCCCHHH---H--
T ss_conf 3898768898678999999978740388882563-----------17731410477024---543624675457---9--
Q ss_pred EECCCHHHHHHHCCCCCCC
Q ss_conf 4432002333201232002
Q gi|254781197|r 80 YLKEDINNPMEHGYDILLI 98 (185)
Q Consensus 80 t~~~~i~~~~~~g~~~il~ 98 (185)
.++++.++.+.-+|||+
T Consensus 190 --~~ALraALReDPDvILi 206 (350)
T TIGR01420 190 --ANALRAALREDPDVILI 206 (350)
T ss_pred --HHHHHHHHCCCCCEEEE
T ss_conf --99976841028988998
No 433
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.37 E-value=0.0031 Score=39.53 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=17.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 8999889999989999999851
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~ 25 (185)
-|.++||||||||.+++.|.+.
T Consensus 541 sFlf~GPTGvGKTElAK~LA~~ 562 (823)
T CHL00095 541 SFIFCGPTGVGKTELTKALASY 562 (823)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8998789988779999999999
No 434
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.37 E-value=0.0038 Score=39.02 Aligned_cols=115 Identities=15% Similarity=0.201 Sum_probs=53.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC-EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEEEC
Q ss_conf 8999889999989999999851898-179986118889998323553000123542111027636445550486055443
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEY-LVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLK 82 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~-~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt~~ 82 (185)
+|+++||.||||||.+..|+...+. ....+ .|-= |-++|.|-+. ..++.-.++ |.--.+-.
T Consensus 3 liLitG~TGSGKTTtl~all~~i~~~~~~~I-iTiE-------DPiE~~~~~~---------~~~i~q~e~-g~~~~sf~ 64 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHI-LTIE-------DPIEFVHESK---------RSLINQREV-GLDTLSFE 64 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCEE-EEEC-------CCHHHHCCCC---------CEEEEECCC-CCCCCCHH
T ss_conf 8999899999799999999985363788369-9964-------7377523676---------448873330-78863799
Q ss_pred CCHHHHHHHCCCCCCCCCCCCHHHHH----HCCCCCHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 20023332012320024310001332----1055310112221332899999886303
Q gi|254781197|r 83 EDINNPMEHGYDILLILTHQGLAPLK----KLYEDQVTSIFIAPPSEAELIQRRIKRR 136 (185)
Q Consensus 83 ~~i~~~~~~g~~~il~id~~G~~~lk----~~~~~~~~~IfI~pps~~~L~~RL~~R~ 136 (185)
+.+...+...-++++.=++.+...+. ...-=....=-+.+.|-..-..||..-.
T Consensus 65 ~~lr~aLR~~PDvI~vGEiRd~et~~~al~aa~TGHlV~sTlHa~sa~~ai~Rl~~~~ 122 (198)
T cd01131 65 NALKAALRQDPDVILVGEMRDLETIRLALTAAETGHLVMSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred HHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHC
T ss_conf 9999998548885752777899999999999971993999767598999999999968
No 435
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein; InterPro: IPR011924 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents LolD, a member of the ABC transporter family. LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on the residue immediately following the modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. Excluded from this entry are homologs from the archaeal genus Methanosarcina .; GO: 0005524 ATP binding, 0006810 transport, 0016020 membrane.
Probab=96.36 E-value=0.0028 Score=39.75 Aligned_cols=71 Identities=15% Similarity=0.081 Sum_probs=42.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH-CCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCC-EEEEEEEECCCEEE
Q ss_conf 718999889999989999999851-8981799861188899983235530001235421110276-36445550486055
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN-SEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTG-LFIETTKVRDEYYG 79 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~-~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g-~flE~~~~~g~~YG 79 (185)
|-++-|+|.||||||||.--|-.= .|.-.- | ..+|++-.=.|..+.-++.... .|| | +||--.
T Consensus 31 GE~~~IvG~SGSGKSTLLHlLGGLD~PT~G~-v----------~f~G~~l~~lS~~~~~~LRN~~LGFi-Y-QFHHLL-- 95 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE-V----------LFNGQSLSKLSSNERAKLRNKKLGFI-Y-QFHHLL-- 95 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-E----------EECCCCHHHCCHHHHHHHHHHHCCCE-E-EHHHCC--
T ss_conf 6337987367871689999873068996315-8----------97063234404467887512225844-4-320203--
Q ss_pred EECCCHHH
Q ss_conf 44320023
Q gi|254781197|r 80 YLKEDINN 87 (185)
Q Consensus 80 t~~~~i~~ 87 (185)
+-+.+++.
T Consensus 96 ~dFtaLEN 103 (221)
T TIGR02211 96 PDFTALEN 103 (221)
T ss_pred CCCCHHHH
T ss_conf 00002688
No 436
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.0031 Score=39.54 Aligned_cols=22 Identities=36% Similarity=0.718 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 8999889999989999999851
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~ 25 (185)
.|.++||||||||.|++.|.+.
T Consensus 523 sFlF~GPTGVGKTELAkaLA~~ 544 (786)
T COG0542 523 SFLFLGPTGVGKTELAKALAEA 544 (786)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 7886678865699999999999
No 437
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=96.35 E-value=0.0014 Score=41.50 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=33.1
Q ss_pred EECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC---CCCCCCCCH
Q ss_conf 9889999989999999851898179986118889998323---553000123
Q gi|254781197|r 7 LIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQ---YIDYRFISQ 55 (185)
Q Consensus 7 i~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~---g~dY~Fvs~ 55 (185)
|+|++.||||||.+.|....+.. -..+.|||-+-.|-.. +..+.|++-
T Consensus 1 ivG~PNvGKSTL~N~Lt~~~~~v-~~~pgTTr~~~~g~~~~~~~~~i~~~Dt 51 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKV-ANYPFTTLEPNLGVVEVPDGARIQVADI 51 (176)
T ss_pred CCCCCCCCHHHHHHHHHCCCCEE-ECCCCCEEEEEEEEEEECCCCEEEEEEC
T ss_conf 96999888999999996899603-0789967612467999479966999957
No 438
>PRK13695 putative NTPase; Provisional
Probab=96.34 E-value=0.0033 Score=39.34 Aligned_cols=44 Identities=23% Similarity=0.241 Sum_probs=28.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC--CCEEEEEEECCCCCCC-CCCCCC
Q ss_conf 89998899999899999998518--9817998611888999-832355
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNS--EYLVMPVGVTTRRPRV-DEKQYI 48 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~--~~~~~~is~TTR~~R~-~E~~g~ 48 (185)
-|.|+||.|+|||||++++++.. +++... -.-|.+.|. |+.-|-
T Consensus 5 kI~iTG~PGvGKTTli~Kv~~~L~~~g~~v~-GF~T~Evre~G~R~GF 51 (174)
T PRK13695 5 RIGITGMPGVGKTTLVLKIAELLAREGYKVG-GFITEEVREGGKRIGF 51 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEE-EEEEEEEECCCEEEEE
T ss_conf 9998789998899999999999863696174-6995256038828505
No 439
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.33 E-value=0.0059 Score=37.86 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=28.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCC-CCCCCCC
Q ss_conf 7189998899999899999998518981799861188899-9832355
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPR-VDEKQYI 48 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R-~~E~~g~ 48 (185)
|..+|+.||||+||+||.+-+..-.+--...|.---|+.- ||-..|+
T Consensus 31 ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergv 78 (259)
T COG4525 31 GELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGV 78 (259)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCEE
T ss_conf 978999768886578899998627585666488899865688743234
No 440
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.33 E-value=0.0036 Score=39.14 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71899988999998999999985
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~ 24 (185)
|..++|.||+|||||||.+.|..
T Consensus 30 Ge~~~i~G~nGsGKSTL~~~l~G 52 (235)
T COG1122 30 GERVLLIGPNGSGKSTLLKLLNG 52 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHCC
T ss_conf 98999988999889999999537
No 441
>KOG3220 consensus
Probab=96.32 E-value=0.0064 Score=37.67 Aligned_cols=91 Identities=20% Similarity=0.212 Sum_probs=51.8
Q ss_pred CHHHHHHHCC-CCCCCCCCCCHH-HHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHH------HHHCCC
Q ss_conf 0023332012-320024310001-33210553101122213328999998863034207899999998------763698
Q gi|254781197|r 84 DINNPMEHGY-DILLILTHQGLA-PLKKLYEDQVTSIFIAPPSEAELIQRRIKRREDTPFNLDPDLFG------KNHSYS 155 (185)
Q Consensus 84 ~i~~~~~~g~-~~il~id~~G~~-~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~d~~~~i~~rl~~------~~~~fD 155 (185)
++...+-.|. .|++|+-.= .. .+.+... .+.+|+ ++. +.=.+||.+|..-+++..+.|+.+ ....-|
T Consensus 98 e~~~~~l~G~r~ivlDiPLL-FE~~~~~~~~-~tvvV~--cd~-~~Ql~Rl~~Rd~lse~dAe~Rl~sQmp~~~k~~~a~ 172 (225)
T KOG3220 98 EILKLLLRGYRVIVLDIPLL-FEAKLLKICH-KTVVVT--CDE-ELQLERLVERDELSEEDAENRLQSQMPLEKKCELAD 172 (225)
T ss_pred HHHHHHHCCCEEEEEECHHH-HHHHHHHHEE-EEEEEE--ECC-HHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999966882899922688-8876774532-589999--890-899999987446469999989873298789998631
Q ss_pred EEEECC-CHHHHHHHHHHHHHHHHH
Q ss_conf 899939-789999999999999985
Q gi|254781197|r 156 FTIVNN-HLPTACRQVGFIREFVKQ 179 (185)
Q Consensus 156 ~~IvNd-dle~a~~~l~~I~e~~~~ 179 (185)
++|.|+ ++++..+++..+...+++
T Consensus 173 ~Vi~Nng~~~~l~~qv~~v~~~~~~ 197 (225)
T KOG3220 173 VVIDNNGSLEDLYEQVEKVLALLQK 197 (225)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 6421799868999999999998533
No 442
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.32 E-value=0.0034 Score=39.29 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 8999889999989999999851
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~ 25 (185)
.|.++||||||||.+++.|.+.
T Consensus 597 sFlf~GptGvGKTELAKaLAe~ 618 (852)
T TIGR03346 597 SFLFLGPTGVGKTELAKALAEF 618 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8998678877689999999999
No 443
>pfam03976 PPK2 Polyphosphate kinase 2 (PPK2). Inorganic polyphosphate (polyP) plays a role in metabolism and regulation and has been proposed to serve as a energy source in a pre-ATP world. In prokaryotes, the synthesis and utilisation of polyP are catalysed by PPK1, PPK2 and polyphosphatases. Proteins with a single PPK2 domain catalyse polyP-dependent phosphorylation of ADP to ATP, whereas proteins containing 2 fused PPK2 domains phosphorylate AMP to ADP. The structure of PPK2 from Pseudomonas aeruginosa has revealed a a 3-layer alpha/beta/alpha sandwich fold with an alpha-helical lid similar to the structures of microbial thymidylate kinases.
Probab=96.31 E-value=0.0069 Score=37.50 Aligned_cols=125 Identities=13% Similarity=0.160 Sum_probs=67.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH-CCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHH-HHHCCCCEEEEEEEECCCEEEE
Q ss_conf 18999889999989999999851-898179986118889998323553000123542-1110276364455504860554
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQVVLN-SEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQF-KGWKHTGLFIETTKVRDEYYGY 80 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L~~~-~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F-~~~i~~g~flE~~~~~g~~YGt 80 (185)
-|||+-|..||||+.+++.|... +|....+ |+.-+|-..|.. . .|. -.| ..+=..|.+ +-+++-+|+-
T Consensus 32 viIv~eG~daaGKg~~I~~l~~~lDPrg~~v--~~~~~pt~eE~~-~--p~l--wRfw~~lP~~G~I---~iFdrSWY~~ 101 (229)
T pfam03976 32 LVVIFEGRDAAGKGGAIKRITEALNPRGARI--VALPAPTEEERS-Q--WYF--QRYVQHLPAGGEI---VLFDRSWYNR 101 (229)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHCCCCEEEE--EECCCCCHHHHC-C--CHH--HHHHHHCCCCCEE---EEECCCHHHH
T ss_conf 8999966577873699999986259885699--868999978847-8--619--9998637777818---9974625566
Q ss_pred EC-CCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 43-20023332012320024310001332105531011222133289999988630342
Q gi|254781197|r 81 LK-EDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRRED 138 (185)
Q Consensus 81 ~~-~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~d 138 (185)
.. +-+...+.....--.--+++........-|..++-+|+.. |.++-.+||.+|..+
T Consensus 102 ~l~~rv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ivKf~lhI-sk~eQ~~Rl~~r~~~ 159 (229)
T pfam03976 102 AGVERVMGFCTPKQYERFLREIPEFERMLTDSGIRVVKFWLSI-SDEEQLERFKERRND 159 (229)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC-CHHHHHHHHHHHHCC
T ss_conf 8999983449999999999999999999996794599998854-989999999987429
No 444
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.31 E-value=0.004 Score=38.89 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
++.++|.||+|+|||+|++.++....
T Consensus 38 ~~~l~i~G~~GsGKTHLl~a~~~~~~ 63 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 88699989999988999999999986
No 445
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=96.30 E-value=0.0042 Score=38.76 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|+-+-|+|||||||+||+..|..-++
T Consensus 1195 GqkVaiVGrSGsGKSTii~lL~Rfyd 1220 (1467)
T PTZ00265 1195 KKTTAIVGETGSGKSTFMNLLLRFYD 1220 (1467)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 98899989999839999999997763
No 446
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=96.29 E-value=0.0035 Score=39.23 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=48.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC-----CCEEEEEEECCCCCCCCCCCCCCCCCCCHH--HHHHHCCCCE-E----EEEE
Q ss_conf 89998899999899999998518-----981799861188899983235530001235--4211102763-6----4455
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNS-----EYLVMPVGVTTRRPRVDEKQYIDYRFISQS--QFKGWKHTGL-F----IETT 71 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~-----~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e--~F~~~i~~g~-f----lE~~ 71 (185)
=|+++|=.|||||||+|.|+.+. |.=..+|===||...+-=.|-+-||=-+.- .|..+.+.-- + +=-+
T Consensus 141 NIlv~GGTGSGKTTLaNAlla~I~~l~~P~dR~vIiEDT~ElQC~A~N~V~lrT~d~~Gi~M~~LLk~TLRlRPDRI~VG 220 (315)
T TIGR02782 141 NILVVGGTGSGKTTLANALLAEIAKLNDPDDRVVIIEDTAELQCAAENLVALRTSDDVGISMTRLLKATLRLRPDRIIVG 220 (315)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEE
T ss_conf 88998145885799999999988521699961899854713201378706874489866147888887500588733563
Q ss_pred EECCCEEEEECCCHHHHHHHCC
Q ss_conf 5048605544320023332012
Q gi|254781197|r 72 KVRDEYYGYLKEDINNPMEHGY 93 (185)
Q Consensus 72 ~~~g~~YGt~~~~i~~~~~~g~ 93 (185)
||.|- --=++-++|..|+
T Consensus 221 EVRg~----eAL~LLKAWNTGH 238 (315)
T TIGR02782 221 EVRGG----EALDLLKAWNTGH 238 (315)
T ss_pred EECCH----HHHHHHHHHCCCC
T ss_conf 01438----9999986405899
No 447
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.28 E-value=0.006 Score=37.84 Aligned_cols=26 Identities=38% Similarity=0.599 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|-++-|+||||||||||++.|..-.+
T Consensus 310 GEi~gi~G~nGsGKsTL~k~l~Gl~~ 335 (520)
T TIGR03269 310 GEIFGIVGTSGAGKTTLSKIIAGVLE 335 (520)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 96899987888878999999948878
No 448
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=96.28 E-value=0.0039 Score=38.95 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=19.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 97189998899999899999998
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVV 23 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~ 23 (185)
+|.+.+++|.|||||+||+...+
T Consensus 634 lg~lt~VtGvSGSGKStLi~~~l 656 (944)
T PRK00349 634 LGKFTCVTGVSGSGKSTLINETL 656 (944)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 89668996147886379999999
No 449
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=96.27 E-value=0.0036 Score=39.13 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99988999998999999985189
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|+++|++|||||||.+++...+.
T Consensus 2 ivilG~~~~GKTsll~~l~~~~~ 24 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFS 24 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99999999888899998875036
No 450
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.27 E-value=0.0044 Score=38.61 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
.+|+++.||-|+|||||++.|.....
T Consensus 78 k~IllL~GPvGsGKStl~~~Lk~~lE 103 (361)
T smart00763 78 KQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 56999988998877999999999999
No 451
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.26 E-value=0.0042 Score=38.77 Aligned_cols=46 Identities=17% Similarity=0.181 Sum_probs=30.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC--CEEE-EEEECCCCCCCCCCCCCC
Q ss_conf 1899988999998999999985189--8179-986118889998323553
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQVVLNSE--YLVM-PVGVTTRRPRVDEKQYID 49 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L~~~~~--~~~~-~is~TTR~~R~~E~~g~d 49 (185)
|+|-|+|.||||||||+.+|+.... ++.. ++-|+-..- +-+..|+|
T Consensus 2 kii~ivG~snSGKTTLi~kli~~l~~~G~~V~~iKH~~H~f-~~D~~GkD 50 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHHDF-DIDTPGKD 50 (159)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCC-CCCCCCCH
T ss_conf 29999967999999999999999997798598997347677-77789844
No 452
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=96.26 E-value=0.0035 Score=39.18 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=23.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCC
Q ss_conf 899988999998999999985189817998611888999
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRV 42 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~ 42 (185)
-++|+||||||||+|...|... ... -+||+=.|..
T Consensus 2 tvLl~Gl~~aGKT~Lf~~L~~~--~~~--~T~tS~~~n~ 36 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTG--KYR--STVTSIEPNV 36 (203)
T ss_pred EEEEECCCCCCHHHHHHHHHCC--CCC--CCCCCCCCCC
T ss_conf 5999907999899999999749--988--8778887862
No 453
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.26 E-value=0.004 Score=38.87 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=20.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
++ +++.||+|+||+|++..|+.+.
T Consensus 38 ph-lLf~GppG~GKTt~a~~la~~l 61 (318)
T PRK00440 38 PH-LLFAGPPGTGKTTAALALAREL 61 (318)
T ss_pred CE-EEEECCCCCCHHHHHHHHHHHH
T ss_conf 66-9888959988999999999997
No 454
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.26 E-value=0.0043 Score=38.69 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++-++||+|+||||+++-|+.-
T Consensus 28 Gei~gllGpNGAGKTTl~~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 819999999998199999999679
No 455
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.24 E-value=0.004 Score=38.85 Aligned_cols=21 Identities=43% Similarity=0.648 Sum_probs=13.5
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 999889999989999999851
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++||||||||.|++.|.+.
T Consensus 599 FLFlGPTGVGKTElAK~LA~~ 619 (852)
T TIGR03345 599 FLLVGPSGVGKTETALALAEL 619 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 998789987789999999999
No 456
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=96.24 E-value=0.0044 Score=38.63 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=31.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEE-----EECCCCCCCCCCCCCCCCC
Q ss_conf 71899988999998999999985189817998-----6118889998323553000
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPV-----GVTTRRPRVDEKQYIDYRF 52 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~i-----s~TTR~~R~~E~~g~dY~F 52 (185)
|.++.|+||+||||+||++.|..-.+.-...| ..+.+.|+..-..|+-|.+
T Consensus 289 GEi~gl~G~nGsGKsTL~~~l~Gl~~~~~G~I~~~G~~i~~~~~~~~~~~gi~~v~ 344 (510)
T PRK09700 289 GEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYIT 344 (510)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHCCCEEEE
T ss_conf 81899976888628899999819888886189999999998998999970867753
No 457
>COG3596 Predicted GTPase [General function prediction only]
Probab=96.22 E-value=0.0058 Score=37.91 Aligned_cols=39 Identities=28% Similarity=0.394 Sum_probs=27.2
Q ss_pred EEE-EECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCC
Q ss_conf 899-988999998999999985189817998611888999
Q gi|254781197|r 4 IFV-LIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRV 42 (185)
Q Consensus 4 iiv-i~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~ 42 (185)
+.+ |+|.+|+||++++|.|++....-.-.+..+||++.-
T Consensus 40 vnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~ 79 (296)
T COG3596 40 VNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTR 79 (296)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHH
T ss_conf 1589743777768899999970267342104668870156
No 458
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=96.19 E-value=0.0038 Score=39.02 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=37.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC--CCCCCCCCCCH
Q ss_conf 89998899999899999998518981799861188899983--23553000123
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDE--KQYIDYRFISQ 55 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E--~~g~dY~Fvs~ 55 (185)
++.|+|.+-||||||.|+|+.+..-+.--.+-|||-...+. .+|..+.+|+-
T Consensus 40 iVaIvGRPNVGKStLFNrL~~~~~AIV~d~pGvTRDr~~~~~~~~~~~f~lvDT 93 (474)
T PRK03003 40 VVAVVGRPNVGKSTLVNRILGRREAVVEDIPGVTRDRVSYDAEWNGRRFVVQDT 93 (474)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECCCEEEEEEC
T ss_conf 899989999888999999868863880598998808636899999928999979
No 459
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.18 E-value=0.0051 Score=38.26 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|--.++.||||+||+||.+-|-.++
T Consensus 37 GECvvL~G~SG~GKStllr~LYaNY 61 (235)
T COG4778 37 GECVVLHGPSGSGKSTLLRSLYANY 61 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 5079966898876889999998514
No 460
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=96.17 E-value=0.0052 Score=38.21 Aligned_cols=18 Identities=39% Similarity=0.733 Sum_probs=14.5
Q ss_pred CCEEEEECCCCCCHHHHH
Q ss_conf 718999889999989999
Q gi|254781197|r 2 AHIFVLIGASGVGETTIA 19 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~ 19 (185)
+|++||+|+|||||++|+
T Consensus 26 ~~lvViTGvSGSGKSSLA 43 (1809)
T PRK00635 26 REIVLLTGVSGSGKSSLA 43 (1809)
T ss_pred CCEEEEECCCCCCHHHHH
T ss_conf 988999799889789999
No 461
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=96.17 E-value=0.0057 Score=37.96 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=19.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
+++|.++||+||||||-+-+|...
T Consensus 1 P~vi~lvGptGvGKTTTiaKLAa~ 24 (196)
T pfam00448 1 PNVILLVGLQGSGKTTTIAKLAAY 24 (196)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 969999899999889999999999
No 462
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family; InterPro: IPR004346 This family includes the Helicobacter pylori protein CagE (see examples), which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration . Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro . Similar type IV transport systems are also found in other bacteria. This family includes proteins from the trb and Vir conjugal transfer systems in Agrobacterium tumefaciens and homologues of VirB proteins from other species.; GO: 0005524 ATP binding.
Probab=96.16 E-value=0.0039 Score=38.93 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=21.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 99988999998999999985189817
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEYLV 30 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~~~ 30 (185)
-.|.||||||||||++=|+.+..++.
T Consensus 519 T~IfG~~G~GKTtLl~fL~a~~~ky~ 544 (931)
T TIGR00929 519 TLIFGPTGSGKTTLLNFLLAQLQKYK 544 (931)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 77888889846999999999974248
No 463
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.15 E-value=0.11 Score=30.40 Aligned_cols=98 Identities=15% Similarity=0.281 Sum_probs=60.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHC--CCEEEE-EEEC-CCCCCCCCCCCCCCCCCCHHHHHHHC-CCCEEEEEEEECCCE
Q ss_conf 189998899999899999998518--981799-8611-88899983235530001235421110-276364455504860
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQVVLNS--EYLVMP-VGVT-TRRPRVDEKQYIDYRFISQSQFKGWK-HTGLFIETTKVRDEY 77 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L~~~~--~~~~~~-is~T-TR~~R~~E~~g~dY~Fvs~e~F~~~i-~~g~flE~~~~~g~~ 77 (185)
.+|=|+|+.|+||||+..+|.... .+...+ ++.- |.|.--|-.= =++-.|+.+- ..|-|+-..--.|..
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL------GDRiRM~~~~~~~~vFiRs~~srG~l 125 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL------GDRIRMQRLAVDPGVFIRSSPSRGTL 125 (323)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCC------CCHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 378731799886688999999999977967899998899998785301------20766776446998178426877651
Q ss_pred EEEECCCHHHH--H-HHCCCCCCCCCCCCHHHH
Q ss_conf 55443200233--3-201232002431000133
Q gi|254781197|r 78 YGYLKEDINNP--M-EHGYDILLILTHQGLAPL 107 (185)
Q Consensus 78 YGt~~~~i~~~--~-~~g~~~il~id~~G~~~l 107 (185)
-|.|.++-+-. + ..|.++|+ |+.-|+-|-
T Consensus 126 GGlS~at~~~i~~ldAaG~DvII-VETVGvGQs 157 (323)
T COG1703 126 GGLSRATREAIKLLDAAGYDVII-VETVGVGQS 157 (323)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEE-EEECCCCCC
T ss_conf 01668899999999861898899-981478841
No 464
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=96.15 E-value=0.0094 Score=36.71 Aligned_cols=45 Identities=27% Similarity=0.339 Sum_probs=28.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEEEEECCCCCC-CCCCCCCCC
Q ss_conf 99988999998999999985189--81799861188899-983235530
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSE--YLVMPVGVTTRRPR-VDEKQYIDY 50 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~--~~~~~is~TTR~~R-~~E~~g~dY 50 (185)
|.|+||+|+|||||++++++... ++... -.-|.+.| .|..-|-+.
T Consensus 2 i~ITG~pGvGKTTli~kv~~~l~~~~~~v~-GF~T~evre~g~R~GF~i 49 (168)
T pfam03266 2 IFITGPPGVGKTTLVKKVIELLKSEGVKVG-GFYTPEVREGGRRIGFDI 49 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEE-EEEECCEECCCCEEEEEE
T ss_conf 899789998899999999999986797074-899302125893789999
No 465
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.14 E-value=0.0025 Score=40.10 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=28.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf 7189998899999899999998518981799861188899983235530001235
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQS 56 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e 56 (185)
++-++++||.|+||.+++..+.+..-.-. -+......|-.+-+.-|.++|.+.
T Consensus 26 ~hAyLF~Gp~G~GK~~~A~~fa~~Ll~~~--~~~~~~~~ri~~~nHPDl~~i~P~ 78 (314)
T PRK07399 26 APAYLFAGPEGVGRKLAALRFIEGLLSQG--SPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCC--CCCCCHHHHHHCCCCCCEEEEECC
T ss_conf 74487789998329999999999985789--999766558751899977886056
No 466
>PRK13537 lipooligosaccharide transporter ATP-binding subunit; Provisional
Probab=96.14 E-value=0.0054 Score=38.10 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|.||.|+||||+++-|..-
T Consensus 31 Gei~gllGpNGAGKTTli~~l~Gl 54 (304)
T PRK13537 31 GECFGLLGPNGAGKTTTLKMLLGL 54 (304)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 959999999897299999999779
No 467
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.0086 Score=36.91 Aligned_cols=92 Identities=16% Similarity=0.244 Sum_probs=47.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEE-EEEEEECCCEEEEECC
Q ss_conf 999889999989999999851898179986118889998323553000123542111027636-4455504860554432
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLF-IETTKVRDEYYGYLKE 83 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~f-lE~~~~~g~~YGt~~~ 83 (185)
|.++||+||||+-|++.|.+.. +.+|++.--|--.-+|=+ |.| | +.-..+++..-.| +|-++ .|--| .+
T Consensus 100 ILLiGPTGsGKTlLAqTLAk~L-nVPFaiADATtLTEAGYV-GED---V-ENillkLlqaadydV~rAe-rGIIy---ID 169 (408)
T COG1219 100 ILLIGPTGSGKTLLAQTLAKIL-NVPFAIADATTLTEAGYV-GED---V-ENILLKLLQAADYDVERAE-RGIIY---ID 169 (408)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-CCCEEECCCCCHHHCCCC-CHH---H-HHHHHHHHHHCCCCHHHHH-CCEEE---EE
T ss_conf 7998889975779999999984-898475144412106635-500---8-9999999987645888882-88599---85
Q ss_pred CHHHHHHHCC--CCCCCCCCCCHHH
Q ss_conf 0023332012--3200243100013
Q gi|254781197|r 84 DINNPMEHGY--DILLILTHQGLAP 106 (185)
Q Consensus 84 ~i~~~~~~g~--~~il~id~~G~~~ 106 (185)
+|++..++.- ++--|+.=+|++|
T Consensus 170 EIDKIarkSen~SITRDVSGEGVQQ 194 (408)
T COG1219 170 EIDKIARKSENPSITRDVSGEGVQQ 194 (408)
T ss_pred CHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 1025420578987234367358999
No 468
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=96.13 E-value=0.0042 Score=38.71 Aligned_cols=37 Identities=22% Similarity=0.185 Sum_probs=26.7
Q ss_pred EEEECCCCCCHHHHHHHHHHH---CCC-EEEEEEECCCCCC
Q ss_conf 999889999989999999851---898-1799861188899
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLN---SEY-LVMPVGVTTRRPR 41 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~---~~~-~~~~is~TTR~~R 41 (185)
|.++|-||+||+|++|.|+.- +++ -...+..||..+-
T Consensus 4 iaVtGesGaGKSSfINAlRGl~~~d~~aA~tGv~eTT~~~~ 44 (197)
T cd04104 4 IAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRT 44 (197)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 99955899868999999868898877758888874677862
No 469
>PRK01156 chromosome segregation protein; Provisional
Probab=96.11 E-value=0.0049 Score=38.35 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=18.7
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 189998899999899999998
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQVV 23 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L~ 23 (185)
-+++|+||-|||||||...++
T Consensus 24 Gi~~I~G~NGaGKStIldAI~ 44 (895)
T PRK01156 24 GINIITGKNGAGKSSIVDAIR 44 (895)
T ss_pred CCEEEECCCCCCHHHHHHHHH
T ss_conf 927888999998789999999
No 470
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=96.11 E-value=0.0046 Score=38.49 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||+|+||+||++.|+.-.
T Consensus 278 GEi~gi~G~nGsGKsTL~~~l~Gl~ 302 (501)
T PRK10762 278 GEILGVSGLMGAGRTELMKVLYGAL 302 (501)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8189966788876889999981876
No 471
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=96.11 E-value=0.0057 Score=37.98 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++-+.||.|+||||+++-|..-
T Consensus 33 Gei~gllGpNGAGKSTli~~l~Gl 56 (306)
T PRK13536 33 GECFGLLGPNGAGKSTIARMILGM 56 (306)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 969999999898099999999679
No 472
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.10 E-value=0.0053 Score=38.16 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=15.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 89998899999899999998518
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~ 26 (185)
.|+++||||||||.+++.|.+..
T Consensus 490 sFlf~GPTGVGKTElak~LA~~L 512 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89997899877799999999998
No 473
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=96.09 E-value=0.0056 Score=38.00 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=19.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHH
Q ss_conf 1899988999998999999985
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQVVL 24 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L~~ 24 (185)
+.++|.|++|+||||++++++.
T Consensus 1 r~i~i~G~aG~GKTtll~kl~~ 22 (165)
T pfam05729 1 RTVILQGEAGSGKTTLLQKLAL 22 (165)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 9899982798989999999999
No 474
>PRK08181 transposase; Validated
Probab=96.08 E-value=0.0038 Score=38.98 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=18.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 18999889999989999999851
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
.=++++||+|+|||.|+..|..+
T Consensus 107 ~Nvil~Gp~GtGKThLA~Alg~~ 129 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA 129 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 70899899998788999999999
No 475
>PRK13409 putative ATPase RIL; Provisional
Probab=96.07 E-value=0.0085 Score=36.95 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=18.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH-CCCEE
Q ss_conf 718999889999989999999851-89817
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN-SEYLV 30 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~-~~~~~ 30 (185)
|+++=|+||-|+||||+++-|... .|++.
T Consensus 99 G~v~GLiG~NGaGKST~lkILsG~l~Pn~G 128 (590)
T PRK13409 99 GKVTGILGPNGIGKSTAVKILSGELIPNLG 128 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 878998899999899999999587148889
No 476
>PRK06526 transposase; Provisional
Probab=96.06 E-value=0.0035 Score=39.20 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=18.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 18999889999989999999851
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
.=++++||+|+|||.|+..|..+
T Consensus 99 ~Nvil~G~~GtGKThLA~Alg~~ 121 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
T ss_conf 87899899998689999999999
No 477
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.008 Score=37.10 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|.=+.|+|||||||||+.+.|....+
T Consensus 364 GEkvAIlG~SGsGKSTllqLl~~~~~ 389 (573)
T COG4987 364 GEKVAILGRSGSGKSTLLQLLAGAWD 389 (573)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 87688877999878999999972358
No 478
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=96.03 E-value=0.0061 Score=37.80 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
|-++.|+|||||||+||++.|+.-.+
T Consensus 288 GEi~gi~G~nGsGKsTLl~~L~Gl~~ 313 (513)
T PRK13549 288 GEILGIAGLVGAGRTELVQCLFGAYP 313 (513)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 84899747988658999999838988
No 479
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381 Members of this family function in ethanolamine and propanediol degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=96.02 E-value=0.003 Score=39.59 Aligned_cols=86 Identities=23% Similarity=0.384 Sum_probs=44.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE-E-EEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEEEEC
Q ss_conf 99988999998999999985189817-9-986118889998323553000123542111027636445550486055443
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEYLV-M-PVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLK 82 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~~~-~-~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YGt~~ 82 (185)
+.++|++|+|||||.+.|....-..+ . +|.|-- ++-+| |+ |+|+||-. ||-
T Consensus 3 ~~f~G~~gCGKTTL~q~L~g~~~~YKKTQAvE~~~-------k~~ID----TP---------GEY~enr~----~Y~--- 55 (144)
T TIGR02528 3 IMFIGSVGCGKTTLTQALQGEEIKYKKTQAVEYKD-------KEAID----TP---------GEYVENRR----YYS--- 55 (144)
T ss_pred EEEEECCCCCHHHHHHHCCCCCCCEEEEEEEEECC-------CCCCC----CC---------CCCCCCCC----HHH---
T ss_conf 78871588874435431168732102334454258-------88655----98---------50015752----378---
Q ss_pred CCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHC
Q ss_conf 200233320123200243100013321055310112221
Q gi|254781197|r 83 EDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIA 121 (185)
Q Consensus 83 ~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~ 121 (185)
++--.+..-.++++. +++..=...++-....+|.+
T Consensus 56 -AL~vtaaDAd~i~lV---~~a~~~~~~f~PgF~~~f~k 90 (144)
T TIGR02528 56 -ALIVTAADADVIALV---QSATDEESRFSPGFASIFVK 90 (144)
T ss_pred -HHHHHHHCCEEEEEE---ECCCCCCCCCCCCCCCCCCC
T ss_conf -888887210236677---35776422378500023678
No 480
>PRK05416 hypothetical protein; Provisional
Probab=96.02 E-value=0.0095 Score=36.67 Aligned_cols=21 Identities=19% Similarity=0.525 Sum_probs=19.2
Q ss_pred CCEEEEECCCCCCHHHHHHHH
Q ss_conf 718999889999989999999
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQV 22 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L 22 (185)
-+++||+|.|||||||-++.|
T Consensus 6 m~lviVTGlSGAGKStAl~~L 26 (292)
T PRK05416 6 MRLVIVTGLSGAGKSVALRAL 26 (292)
T ss_pred EEEEEEECCCCCCHHHHHHHH
T ss_conf 689999689978799999999
No 481
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=96.01 E-value=0.0045 Score=38.57 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=18.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 18999889999989999999851
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
+=+++.||+|+|||.|+..+..+
T Consensus 48 ~Nlll~G~~GtGKThLA~Ai~~~ 70 (178)
T pfam01695 48 ENLLLLGPPGVGKTHLACALGHQ 70 (178)
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
T ss_conf 76899899998789999999999
No 482
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=96.01 E-value=0.0038 Score=38.99 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=26.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf 999889999989999999851898179986118889
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRP 40 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~ 40 (185)
+.|+|-+.||||||++.|+.+.--....++.|||-.
T Consensus 103 i~ivG~PNVGKSsliN~L~~~~~~~v~~~pGtTrd~ 138 (155)
T cd01849 103 VGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ 138 (155)
T ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEECE
T ss_conf 999877774477899998478506266999838355
No 483
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=96.00 E-value=0.0022 Score=40.42 Aligned_cols=47 Identities=17% Similarity=0.128 Sum_probs=30.5
Q ss_pred EECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCC--CCCCCCCCC
Q ss_conf 988999998999999985189817998611888999832--355300012
Q gi|254781197|r 7 LIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEK--QYIDYRFIS 54 (185)
Q Consensus 7 i~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~--~g~dY~Fvs 54 (185)
|+|++.||||||.++|+..... .-..+-|||-+..+.. +|..+.|++
T Consensus 1 ivG~pNvGKSTL~N~L~g~~~~-vs~~pgtTrd~~~~~~~~~~~~~~lvD 49 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQK-VGNWPGVTVEKKEGRFKLGGKEIEIVD 49 (158)
T ss_pred CCCCCCCCHHHHHHHHHCCCCE-ECCCCCCEEEEEEEEEEECCEEEEEEE
T ss_conf 9798988899999999599864-617898276347889962993799997
No 484
>KOG0744 consensus
Probab=96.00 E-value=0.0062 Score=37.74 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
.|+|.+-||.|.||++|+|.|+++.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL 201 (423)
T KOG0744 177 NRLILLHGPPGTGKTSLCKALAQKL 201 (423)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1489985799988227999998751
No 485
>COG1160 Predicted GTPases [General function prediction only]
Probab=96.00 E-value=0.0091 Score=36.79 Aligned_cols=53 Identities=19% Similarity=0.229 Sum_probs=39.2
Q ss_pred CC-CEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCC--CCCCCCCCCC
Q ss_conf 97-18999889999989999999851898179986118889998--3235530001
Q gi|254781197|r 1 MA-HIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVD--EKQYIDYRFI 53 (185)
Q Consensus 1 m~-kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~--E~~g~dY~Fv 53 (185)
|. ..++|+|-..||||||.|+|+.+..-+.--.+-|||-+..+ |..|..+..|
T Consensus 1 m~~~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lI 56 (444)
T COG1160 1 MSTPVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILI 56 (444)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCEEEEEECCCCCCCCCCCCEEEECCCEEEEE
T ss_conf 99778999899987589999887577026760699975577545069838607999
No 486
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=95.99 E-value=0.007 Score=37.44 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=22.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf 8999889999989999999851898179986118889
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRP 40 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~ 40 (185)
-|+|+||+|||||+|...|... ... -++|+=.|
T Consensus 5 tvLllGl~~sGKT~Lf~~L~~~--~~~--~T~tS~~~ 37 (181)
T pfam09439 5 AVIIAGLCDSGKTSLFTLLTTG--SVR--KTVTSQEP 37 (181)
T ss_pred EEEEECCCCCCHHHHHHHHHCC--CCC--CEECCCCC
T ss_conf 6999868999899999999759--948--75888678
No 487
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.99 E-value=0.0094 Score=36.68 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=24.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 7189998899999899999998518981799861
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGV 35 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~ 35 (185)
|..+-|+|.||+||||+.+.++.-.+-....|.+
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f 72 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTSGEILF 72 (268)
T ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 9878999368887787999997283888726998
No 488
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=95.99 E-value=0.0062 Score=37.73 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 89998899999899999998518
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~ 26 (185)
=|+++||+|||||||+++|....
T Consensus 7 kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 7 KIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999998899999996476
No 489
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.98 E-value=0.0071 Score=37.42 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 1899988999998999999985189
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
.+|+|.||=|+|||||++.|.++.+
T Consensus 5 ~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 5 MVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 0899844644687899999998838
No 490
>pfam03668 ATP_bind_2 P-loop ATPase protein family. This family contains an ATP-binding site and could be an ATPase (personal obs:C Yeats).
Probab=95.98 E-value=0.0096 Score=36.64 Aligned_cols=20 Identities=20% Similarity=0.586 Sum_probs=18.5
Q ss_pred CEEEEECCCCCCHHHHHHHH
Q ss_conf 18999889999989999999
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQV 22 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L 22 (185)
+++||+|.|||||||-++.|
T Consensus 2 ~lviVTGlSGAGKStAl~~L 21 (284)
T pfam03668 2 DLVIITGRSGAGKSVALRAL 21 (284)
T ss_pred EEEEEECCCCCCHHHHHHHH
T ss_conf 69999579977799999999
No 491
>KOG3308 consensus
Probab=95.97 E-value=0.0097 Score=36.61 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=23.8
Q ss_pred CC-EEE-EECCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 71-899-9889999989999999851898179
Q gi|254781197|r 2 AH-IFV-LIGASGVGETTIAKQVVLNSEYLVM 31 (185)
Q Consensus 2 ~k-iiv-i~GpSGsGK~tl~~~L~~~~~~~~~ 31 (185)
.| +|| |+|-|.||||||++.|..-+++...
T Consensus 2 ~K~~ivgiSG~TnsGKTTLak~l~~~f~~~~l 33 (225)
T KOG3308 2 MKTLIVGISGCTNSGKTTLAKSLHRFFPGCSL 33 (225)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 61899986424678776899999987368746
No 492
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=95.97 E-value=0.0079 Score=37.13 Aligned_cols=23 Identities=39% Similarity=0.601 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99988999998999999985189
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
+.+.||+|+|||++++.+++...
T Consensus 1 iLl~GppGtGKT~~a~~la~~~~ 23 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKELG 23 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHHC
T ss_conf 98789999999999999999978
No 493
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=95.96 E-value=0.0068 Score=37.52 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 89998899999899999998518
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~ 26 (185)
.|.++||||+||+.+++.|.+..
T Consensus 5 ~~l~~GPsGvGKT~lAk~la~~l 27 (168)
T pfam07724 5 SFLFLGPTGVGKTELAKALAELL 27 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99988989989999999999996
No 494
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.011 Score=36.28 Aligned_cols=74 Identities=16% Similarity=0.173 Sum_probs=47.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCC---CCEEEE-EEEECCC
Q ss_conf 971899988999998999999985189817998611888999832355300012354211102---763644-5550486
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKH---TGLFIE-TTKVRDE 76 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~---~g~flE-~~~~~g~ 76 (185)
.|+.+.++||||+||+||.+.|..-++.-..+|. .||.|-.=++++.-.+.|. ++.-+- -.-++..
T Consensus 288 ~g~tvAiVG~SG~gKsTI~rLlfRFyD~~sG~I~----------id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yNi 357 (497)
T COG5265 288 LGKTVAIVGESGAGKSTILRLLFRFYDVNSGSIT----------IDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNI 357 (497)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEE----------ECCHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHH
T ss_conf 7647999807887477999999998177674377----------762067887799999983757553000325599987
Q ss_pred EEEEECCC
Q ss_conf 05544320
Q gi|254781197|r 77 YYGYLKED 84 (185)
Q Consensus 77 ~YGt~~~~ 84 (185)
.||-+..+
T Consensus 358 ~ygr~~at 365 (497)
T COG5265 358 KYGRPDAT 365 (497)
T ss_pred HCCCCCCC
T ss_conf 42685665
No 495
>pfam01202 SKI Shikimate kinase.
Probab=95.93 E-value=0.022 Score=34.50 Aligned_cols=55 Identities=7% Similarity=0.066 Sum_probs=30.8
Q ss_pred HHHHHHCCCCHHHHHHHHHHCCC-------CCHHHH----HHHHHHHHHCCCEEEECC--CHHHHHHHH
Q ss_conf 01122213328999998863034-------207899----999998763698899939--789999999
Q gi|254781197|r 115 VTSIFIAPPSEAELIQRRIKRRE-------DTPFNL----DPDLFGKNHSYSFTIVNN--HLPTACRQV 170 (185)
Q Consensus 115 ~~~IfI~pps~~~L~~RL~~R~~-------d~~~~i----~~rl~~~~~~fD~~IvNd--dle~a~~~l 170 (185)
..+|||.+ +.+.+.+|+..+.. +..+.+ .+|...+...-|++|..+ +.++.+++|
T Consensus 86 g~vi~L~~-~~~~i~~Rl~~~~~RPll~~~~~~~~~~~l~~~R~~~Y~~~a~~~i~~~~~~~~ei~~~I 153 (158)
T pfam01202 86 GIVVYLDA-DPEVLLERLKADKTRPLLQDKDPEEELLELLFERCPLYEEAADIVVDTDESSPEEVAEEI 153 (158)
T ss_pred CEEEEEEC-CHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHH
T ss_conf 92799849-999999997179999989899879999999999999999869999879999999999999
No 496
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.93 E-value=0.014 Score=35.77 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71899988999998999999985189
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
++=|+++|+.||||||+++.|+...+
T Consensus 144 r~nilVsGgTGSGKTTllnaL~~~i~ 169 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89689991777756899999998640
No 497
>pfam00931 NB-ARC NB-ARC domain.
Probab=95.93 E-value=0.0071 Score=37.42 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 18999889999989999999851
Q gi|254781197|r 3 HIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 3 kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
++|-|+|++|+|||||++.+...
T Consensus 20 ~vI~I~G~gGiGKTtLA~~v~~~ 42 (285)
T pfam00931 20 GVVGIVGMGGVGKTTLAKQIYND 42 (285)
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 39998899956399999999716
No 498
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=95.93 E-value=0.0098 Score=36.60 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7189998899999899999998518
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNS 26 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~ 26 (185)
|.++.|+||+||||+||++.|+.-.
T Consensus 279 GEivgivG~nGsGKSTL~k~L~Gl~ 303 (501)
T PRK11288 279 GEIVGFFGLVGAGRSELMKLLYGAT 303 (501)
T ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 8399975688864879999843874
No 499
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD; InterPro: IPR014138 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are related families..
Probab=95.93 E-value=0.0072 Score=37.39 Aligned_cols=54 Identities=13% Similarity=0.163 Sum_probs=38.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEECCCCCCCCC--CCCCCCCCCCHHHHHHHCC
Q ss_conf 971899988999998999999985189-81799861188899983--2355300012354211102
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSE-YLVMPVGVTTRRPRVDE--KQYIDYRFISQSQFKGWKH 63 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~-~~~~~is~TTR~~R~~E--~~g~dY~Fvs~e~F~~~i~ 63 (185)
+|+++-|+|.||||||.-+..++.--| +...+ .|| .+|+++-=..+++++....
T Consensus 11 ~G~~~aLvG~SGSGKS~tc~A~Lg~L~~~~~~~---------~G~i~l~G~~~~~~p~kemr~~Rg 67 (239)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---------SGEILLDGRPLLALPKKEMRSIRG 67 (239)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEE---------EEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 243788874878758999999850358652231---------026677172314587368998866
No 500
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.93 E-value=0.0079 Score=37.14 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
|.++.|+||-|+|||||++.++.-
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 968999999888889999999678
Done!