HHsearch alignment for GI: 254781197 and conserved domain: pfam00485
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=98.33 E-value=1.1e-06 Score=59.61 Aligned_cols=132 Identities=20% Similarity=0.178 Sum_probs=63.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC--EEE-EE----EECC-C---C--CCCCC-CCCCCCCCCCHHHHH--------HH
Q ss_conf 8999889999989999999851898--179-98----6118-8---8--99983-235530001235421--------11
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEY--LVM-PV----GVTT-R---R--PRVDE-KQYIDYRFISQSQFK--------GW 61 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~--~~~-~i----s~TT-R---~--~R~~E-~~g~dY~Fvs~e~F~--------~~ 61 (185)
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~~~~~~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~d~P~a~d~~ll~~~l~~ 80 (196)
T pfam00485 1 IIGVAGSSGAGKTTVARTFVSIFGREGVPAAGIEGDSFHRYDRFYMDLHMEDRKRAGNNHYSFFSPEANDFDLLYEQFKE 80 (196)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECHHCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 98998998571999999999996605877641243179860410244375767651457889789662359999999999
Q ss_pred CCCCEEEEEEEECCCEEEEECCCHHHHHHHCCCCCCCCCCCCHHH-----HHHCCCCCHHHHHHCCCCHHHHHHHHHH--
Q ss_conf 027636445550486055443200233320123200243100013-----3210553101122213328999998863--
Q gi|254781197|r 62 KHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAP-----LKKLYEDQVTSIFIAPPSEAELIQRRIK-- 134 (185)
Q Consensus 62 i~~g~flE~~~~~g~~YGt~~~~i~~~~~~g~~~il~id~~G~~~-----lk~~~~~~~~~IfI~pps~~~L~~RL~~-- 134 (185)
T Consensus 81 Lk~g~~i~~P~Y-df~~~~r~~~-~~~i~p~~viI----vEGi~~l~~~~ir~l~D---~kIfid~~~d~rl~RRi~RD~ 151 (196)
T pfam00485 81 LKEGGSGDKPIY-NHVTGEADPW-PELIEGADILF----IEGLHGLYDERVAQLLD---LKIYVDPDIDLELIQKIQRDM 151 (196)
T ss_pred HHCCCCEEEEEE-ECCCCCCCCC-CEECCCCCEEE----EECHHHCCCHHHHHHHC---EEEEEECCCCHHHHHHHHHCH
T ss_conf 708994576567-5134533677-36617885699----94333303277887638---479972680199999987345
Q ss_pred --CCCCCHHHHH
Q ss_conf --0342078999
Q gi|254781197|r 135 --RREDTPFNLD 144 (185)
Q Consensus 135 --R~~d~~~~i~ 144 (185)
T Consensus 152 ~eRgrs~~~v~~ 163 (196)
T pfam00485 152 AERGHSLEGVTD 163 (196)
T ss_pred HHHCCCHHHHHH
T ss_conf 751999999999