RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781197|ref|YP_003065610.1| guanylate kinase [Candidatus
Liberibacter asiaticus str. psy62]
(185 letters)
>gnl|CDD|132307 TIGR03263, guanyl_kin, guanylate kinase. Members of this family
are the enzyme guanylate kinase, also called GMP kinase.
This enzyme transfers a phosphate from ATP to GMP,
yielding ADP and GDP.
Length = 180
Score = 112 bits (282), Expect = 7e-26
Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 7/173 (4%)
Query: 4 IFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKH 63
+ V+ G SGVG++T+ K ++ L + TTR+PR E +DY F+S+ +F+
Sbjct: 3 LIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIA 62
Query: 64 TGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPP 123
G F+E +V YYG K + + G D+LL + QG +KK + D SIFI PP
Sbjct: 63 AGEFLEWAEVHGNYYGTPKSPVEEALAAGKDVLLEIDVQGARQVKKKFPD-AVSIFILPP 121
Query: 124 SEAELIQRRIKRREDTPFNLDPDL------FGKNHSYSFTIVNNHLPTACRQV 170
S EL +R KR D+ ++ L + + IVN+ L A ++
Sbjct: 122 SLEELERRLRKRGTDSEEVIERRLAKAKKEIAHADEFDYVIVNDDLEKAVEEL 174
>gnl|CDD|178968 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 104 bits (263), Expect = 1e-23
Identities = 57/175 (32%), Positives = 84/175 (48%), Gaps = 11/175 (6%)
Query: 4 IFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKH 63
+ VL G SG G++T+ K ++ L + V TTR PR E +DY F+S+ +F+
Sbjct: 7 LIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIE 66
Query: 64 TGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPP 123
G F+E +V YYG + + + G D+LL + QG +KK D SIFI PP
Sbjct: 67 NGEFLEWAEVFGNYYGTPRSPVEEALAAGKDVLLEIDWQGARQVKKKMPD-AVSIFILPP 125
Query: 124 SEAELIQRRIKRREDTPFNLDPDLFGKN--------HSYSFTIVNNHLPTACRQV 170
S EL +R R D+ + L Y + IVN+ L TA ++
Sbjct: 126 SLEELERRLRGRGTDSEEVIARRL--AKAREEIAHASEYDYVIVNDDLDTALEEL 178
>gnl|CDD|128386 smart00072, GuKc, Guanylate kinase homologues. Active enzymes
catalyze ATP-dependent phosphorylation of GMP to GDP.
Structure resembles that of adenylate kinase. So-called
membrane-associated guanylate kinase homologues (MAGUKs)
do not possess guanylate kinase activities; instead at
least some possess protein-binding functions.
Length = 184
Score = 93.9 bits (234), Expect = 2e-20
Identities = 57/174 (32%), Positives = 84/174 (48%), Gaps = 8/174 (4%)
Query: 4 IFVLIGASGVGETTIAKQVVL-NSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK 62
VL G SGVG+ T+ +++ + V TTR PR E +DY F+S+ +F+
Sbjct: 4 PIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDI 63
Query: 63 HTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAP 122
+GLF+E + YYG KE I E G LL + QG+ L+K + IFIAP
Sbjct: 64 KSGLFLEWGEYSGNYYGTSKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPI-VIFIAP 122
Query: 123 PSEAELIQRRIKRREDTPFNLDPDL------FGKNHSYSFTIVNNHLPTACRQV 170
PS EL +R R +T + L + H + + IVN+ L A ++
Sbjct: 123 PSSEELERRLRGRGTETAERIQKRLAAAQKEAQEYHLFDYVIVNDDLEDAYEEL 176
>gnl|CDD|184809 PRK14738, gmk, guanylate kinase; Provisional.
Length = 206
Score = 79.0 bits (195), Expect = 7e-16
Identities = 43/139 (30%), Positives = 69/139 (49%), Gaps = 1/139 (0%)
Query: 6 VLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTG 65
V+ G SGVG+ + ++ V TTR R E +DY F++ +F+
Sbjct: 17 VISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQN 76
Query: 66 LFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSE 125
+E +V YYG K + + G D+++ + QG A +K+L + V IF+APPS
Sbjct: 77 ELLEWAEVYGNYYGVPKAPVRQALASGRDVIVKVDVQGAASIKRLVPEAVF-IFLAPPSM 135
Query: 126 AELIQRRIKRREDTPFNLD 144
EL +R RR ++P L+
Sbjct: 136 DELTRRLELRRTESPEELE 154
>gnl|CDD|173199 PRK14737, gmk, guanylate kinase; Provisional.
Length = 186
Score = 77.7 bits (191), Expect = 1e-15
Identities = 45/176 (25%), Positives = 89/176 (50%), Gaps = 6/176 (3%)
Query: 4 IFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKH 63
+F++ +G G++TI + ++ + + TTR PR +++ Y F++ +FK
Sbjct: 6 LFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIA 65
Query: 64 TGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPP 123
G F+E +V D YYG K I + + G ++ + QG +K+ + +++ +IFI PP
Sbjct: 66 DGEFLEWAEVHDNYYGTPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPP 125
Query: 124 SEAELIQRRIKRREDTPFNLDPDL------FGKNHSYSFTIVNNHLPTACRQVGFI 173
SE E +R I R D+ +++ + + + + + I+N+ L A + I
Sbjct: 126 SEEEWEERLIHRGTDSEESIEKRIENGIIELDEANEFDYKIINDDLEDAIADLEAI 181
>gnl|CDD|178371 PLN02772, PLN02772, guanylate kinase.
Length = 398
Score = 48.7 bits (116), Expect = 9e-07
Identities = 44/138 (31%), Positives = 62/138 (44%), Gaps = 8/138 (5%)
Query: 6 VLIGASGVGE-TTIAKQVVLNSEYLVM---PVGVTTRRPRVDEKQYIDYRFISQSQFKGW 61
V+ G SGVG+ T I+ L E+ M V TTR PR EK + Y F +S +
Sbjct: 139 VISGPSGVGKGTLISM---LMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKE 195
Query: 62 KHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIA 121
G F+E V YG E + + G +L + QG ++ + + IFI
Sbjct: 196 IKDGKFLEFASVHGNLYGTSIEAVEVVTDSGKRCILDIDVQGARSVRASSLEAIF-IFIC 254
Query: 122 PPSEAELIQRRIKRREDT 139
PPS EL +R R +T
Sbjct: 255 PPSMEELEKRLRARGTET 272
>gnl|CDD|169554 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau;
Validated.
Length = 709
Score = 31.6 bits (71), Expect = 0.11
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 3 HIFVLIGASGVGETTIAKQVV--LNSEYLVM--PVGVTTRRPRVDEKQYID 49
H ++L G GVG+TTIA+ + LN E P GV ++D +Y+D
Sbjct: 39 HAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVD 89
>gnl|CDD|180790 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 31.7 bits (72), Expect = 0.12
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 3 HIFVLIGASGVGETTI----AKQVVLNSEYLV--MPVGVTTRRPRVDEKQYIDY 50
H ++ G GVG+TT+ AK LN E V P GV +DE +++DY
Sbjct: 39 HAYLFTGTRGVGKTTLSRIFAK--ALNCETGVTSQPCGVCRACREIDEGRFVDY 90
>gnl|CDD|184929 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 28.9 bits (65), Expect = 0.69
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 1 MAHIFVLIGASGVGETTIAKQV--VLNSE 27
+AH F+ GA GVG+T+ A+ + LN E
Sbjct: 37 VAHAFLFTGARGVGKTSTARILAKALNCE 65
>gnl|CDD|184924 PRK14960, PRK14960, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 702
Score = 28.5 bits (63), Expect = 1.1
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 3 HIFVLIGASGVGETTIAKQVV--LNSEYLV--MPVGVTTRRPRVDEKQYID 49
H ++ G GVG+TTIA+ + LN E V P V V+E ++ID
Sbjct: 38 HAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFID 88
>gnl|CDD|162298 TIGR01313, therm_gnt_kin, carbohydrate kinase, thermoresistant
glucokinase family. This model represents a subfamily
of proteins that includes thermoresistant and
thermosensitve isozymes of gluconate kinase
(gluconokinase) in E. coli and other related proteins;
members of this family are often named by similarity to
the thermostable isozyme. These proteins show homology
to shikimate kinases and adenylate kinases but not to
gluconate kinases from the FGGY family of carbohydrate
kinases.
Length = 163
Score = 27.8 bits (62), Expect = 1.7
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 5 FVLIGASGVGETTIAKQV 22
FVL+G +G G++TIA +
Sbjct: 1 FVLMGVAGSGKSTIASAL 18
>gnl|CDD|163294 TIGR03499, FlhF, flagellar biosynthetic protein FlhF.
Length = 282
Score = 27.7 bits (62), Expect = 2.0
Identities = 9/18 (50%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Query: 4 IFVLIGASGVGETT-IAK 20
+ L+G +GVG+TT +AK
Sbjct: 196 VIALVGPTGVGKTTTLAK 213
>gnl|CDD|163592 TIGR03880, KaiC_arch_3, KaiC domain protein, AF_0351 family.
This model represents a rather narrowly distributed
archaeal protein family in which members have a single
copy of the KaiC domain. This stands in contrast to the
circadian clock protein KaiC itself, with two copies of
the domain. Members are expected to have weak ATPase
activity, by homology to the
autokinase/autophosphorylase KaiC itself.
Length = 224
Score = 27.4 bits (61), Expect = 2.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 3 HIFVLIGASGVGETTIAKQ 21
H+ V+IG G G+TT + Q
Sbjct: 17 HVIVVIGEYGTGKTTFSLQ 35
>gnl|CDD|180787 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 484
Score = 27.3 bits (61), Expect = 2.2
Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Query: 4 IFVLIGASGVGE-TTIAK 20
+F L+G +GVG+ TT AK
Sbjct: 258 VFALMGPTGVGKTTTTAK 275
>gnl|CDD|184920 PRK14956, PRK14956, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 484
Score = 27.2 bits (60), Expect = 2.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 1 MAHIFVLIGASGVGETTIAK 20
+ H ++ G GVG+TTIA+
Sbjct: 39 IGHAYIFFGPRGVGKTTIAR 58
>gnl|CDD|178887 PRK00131, aroK, shikimate kinase; Reviewed.
Length = 175
Score = 27.1 bits (61), Expect = 2.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 6 VLIGASGVGETTIAKQV 22
VLIG G G++TI + +
Sbjct: 8 VLIGFMGAGKSTIGRLL 24
>gnl|CDD|181656 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau;
Validated.
Length = 598
Score = 27.2 bits (61), Expect = 2.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 2 AHIFVLIGASGVGETTIA 19
A F+L G GVG+TT A
Sbjct: 46 AQAFMLTGVRGVGKTTTA 63
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2.
Length = 520
Score = 27.1 bits (60), Expect = 2.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 2 AHIFVLIGASGVGETTIAK 20
IF ++G SG G+TT++K
Sbjct: 310 GEIFGIVGTSGAGKTTLSK 328
>gnl|CDD|162028 TIGR00763, lon, ATP-dependent protease La. This protein is induced
by heat shock and other stresses in E. coli, B.
subtilis, and other species. The yeast member,
designated PIM1, is located in the mitochondrial matrix,
required for mitochondrial function, and also induced by
heat shock.
Length = 775
Score = 27.3 bits (61), Expect = 2.8
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 4 IFVLIGASGVGETTIAKQV--VLNSEYLVMPVG 34
I L+G GVG+T++ K + LN +++ +G
Sbjct: 349 ILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLG 381
>gnl|CDD|184928 PRK14964, PRK14964, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 491
Score = 27.0 bits (60), Expect = 2.8
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 7 LIGASGVGETTIAKQVVL 24
L+GASGVG+TT A+ + L
Sbjct: 40 LVGASGVGKTTCARIISL 57
>gnl|CDD|179681 PRK03946, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase;
Provisional.
Length = 307
Score = 26.9 bits (60), Expect = 2.9
Identities = 12/17 (70%), Positives = 13/17 (76%), Gaps = 2/17 (11%)
Query: 102 QGLAPLKKLYEDQVTSI 118
QGLAPLK LY D+ SI
Sbjct: 246 QGLAPLKALYFDE--SI 260
>gnl|CDD|184933 PRK14969, PRK14969, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 527
Score = 27.0 bits (60), Expect = 2.9
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 3 HIFVLIGASGVGETTIAKQVV--LNSEYLVM--PVGVTTRRPRVDEKQYIDY 50
H ++ G GVG+TT+A+ + LN E V P GV + +D +++D
Sbjct: 39 HAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90
>gnl|CDD|150614 pfam09960, DUF2194, Uncharacterized protein conserved in bacteria
(DUF2194). This domain, found in various hypothetical
bacterial proteins, has no known function.
Length = 573
Score = 27.0 bits (60), Expect = 3.0
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 22/68 (32%)
Query: 62 KHTGLFIET-------------TKVRDEYYGYLKEDINNPME---HGYDILLILTHQGLA 105
K+TG+ IE K DE+ + KE +N+ E HGY+ HQ L
Sbjct: 290 KYTGVVIENYNNKTTPPFSFFEQKNTDEFIYFGKELLNSGGEIGIHGYN------HQPLL 343
Query: 106 PLKKLYED 113
P Y D
Sbjct: 344 PENVDYGD 351
>gnl|CDD|181520 PRK08645, PRK08645, bifunctional homocysteine
S-methyltransferase/5,10-methylenetetrahydrofolate
reductase protein; Reviewed.
Length = 612
Score = 27.1 bits (61), Expect = 3.1
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 11/58 (18%)
Query: 102 QGLAPLKKLYEDQVTSIFIAPPSEAELIQR-----RIKRRE------DTPFNLDPDLF 148
+ L LK + E +V +E L + ++K+ + D P LD D F
Sbjct: 283 RALKGLKPVTEKEVKPRPKVVVTEEPLKAKSSLLDKLKKGKTVIVELDPPKGLDTDKF 340
>gnl|CDD|133910 PHA00540, PHA00540, hypothetical protein.
Length = 715
Score = 26.9 bits (59), Expect = 3.4
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 24 LNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETT 71
LN E + +T + ++E +I+ F+ S F+ W T FI T
Sbjct: 31 LNEEQYTLKQESSTGKG-INETDFINTMFLRSSFFENWSETNYFINPT 77
>gnl|CDD|161928 TIGR00557, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase.
This model represents PdxA, an NAD+-dependent
4-hydroxythreonine 4-phosphate dehydrogenase (EC
1.1.1.262) active in pyridoxal phosphate biosynthesis.
Length = 320
Score = 26.7 bits (60), Expect = 3.4
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 92 GYDILLILTH-QGLAPLKKLYEDQ 114
YD +L + H QGL PLK L D+
Sbjct: 252 KYDAVLAMYHDQGLIPLKYLGFDE 275
>gnl|CDD|183453 PRK12338, PRK12338, hypothetical protein; Provisional.
Length = 319
Score = 26.6 bits (59), Expect = 3.4
Identities = 13/28 (46%), Positives = 22/28 (78%), Gaps = 3/28 (10%)
Query: 6 VLIG-ASGVGETTIAKQVV--LNSEYLV 30
+LIG ASG+G++TIA ++ LN ++L+
Sbjct: 7 ILIGSASGIGKSTIASELARTLNIKHLI 34
>gnl|CDD|182791 PRK10865, PRK10865, protein disaggregation chaperone; Provisional.
Length = 857
Score = 26.7 bits (59), Expect = 3.5
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Query: 6 VLIGASGVGETTIAK---QVVLNSEYLVMPVGVTTRR 39
VLIG GVG+T I + Q ++N E +P G+ RR
Sbjct: 203 VLIGEPGVGKTAIVEGLAQRIINGE---VPEGLKGRR 236
>gnl|CDD|181681 PRK09183, PRK09183, transposase/IS protein; Provisional.
Length = 259
Score = 26.6 bits (59), Expect = 3.8
Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 29/104 (27%)
Query: 6 VLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTG 65
VL+G SGVG+T +A + L Y + G+ RF + +
Sbjct: 106 VLLGPSGVGKTHLA--IALG--YEAVRAGIKV-------------RFTTAADLL------ 142
Query: 66 LFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKK 109
L + T + + Y L+ + P LLI+ G P +
Sbjct: 143 LQLSTAQRQGRYKTTLQRGVMAPR------LLIIDEIGYLPFSQ 180
>gnl|CDD|162839 TIGR02397, dnaX_nterm, DNA polymerase III, subunit gamma and tau.
This model represents the well-conserved first ~ 365
amino acids of the translation of the dnaX gene. The
full-length product of the dnaX gene in the model
bacterium E. coli is the DNA polymerase III tau
subunit. A translational frameshift leads to early
termination and a truncated protein subunit gamma,
about 1/3 shorter than tau and present in roughly equal
amounts. This frameshift mechanism is not necessarily
universal for species with DNA polymerase III but
appears conserved in the exterme thermophile Thermus
thermophilis.
Length = 355
Score = 26.4 bits (59), Expect = 4.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 2 AHIFVLIGASGVGETTIAK 20
AH ++ G G G+T+IA+
Sbjct: 36 AHAYLFSGPRGTGKTSIAR 54
>gnl|CDD|178910 PRK00166, apaH, diadenosine tetraphosphatase; Reviewed.
Length = 275
Score = 26.3 bits (59), Expect = 4.6
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 94 DILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELI 129
D+ L+ G+ KK +D + I AP + EL+
Sbjct: 67 DLHLLAVAAGIKRNKK--KDTLDPILEAPDRD-ELL 99
>gnl|CDD|180683 PRK06762, PRK06762, hypothetical protein; Provisional.
Length = 166
Score = 26.1 bits (58), Expect = 5.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 1 MAHIFVLIGASGVGETTIAKQV 22
M + ++ G SG G+TTIAKQ+
Sbjct: 1 MTTLIIIRGNSGSGKTTIAKQL 22
>gnl|CDD|184172 PRK13600, PRK13600, putative ribosomal protein L7Ae-like;
Provisional.
Length = 84
Score = 26.4 bits (58), Expect = 5.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 107 LKKLYEDQVTSIFIAPPSEAELIQR 131
LK L +DQVTS+ IA E L+ R
Sbjct: 22 LKALKKDQVTSLIIAEDVEVYLMTR 46
>gnl|CDD|162266 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH.
HflB(FtsH) is a pleiotropic protein required for correct
cell division in bacteria. It has ATP-dependent zinc
metalloprotease activity. It was formerly designated
cell division protein FtsH.
Length = 495
Score = 26.1 bits (58), Expect = 5.2
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 10/45 (22%)
Query: 7 LIGASGVGETTIAKQV----------VLNSEYLVMPVGVTTRRPR 41
L+G G G+T +AK V + S+++ M VGV R R
Sbjct: 93 LVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVR 137
>gnl|CDD|183702 PRK12723, PRK12723, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 388
Score = 26.0 bits (57), Expect = 6.1
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 4 IFVLIGASGVGE-TTIAKQVVLNS 26
+F+L+G +GVG+ TTIAK +
Sbjct: 176 VFILVGPTGVGKTTTIAKLAAIYG 199
>gnl|CDD|179793 PRK04220, PRK04220, 2-phosphoglycerate kinase; Provisional.
Length = 301
Score = 26.1 bits (58), Expect = 6.2
Identities = 12/17 (70%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
Query: 4 IFVLIG-ASGVGETTIA 19
I +LIG ASGVG +TIA
Sbjct: 93 IIILIGGASGVGTSTIA 109
>gnl|CDD|163188 TIGR03223, Phn_opern_protn, putative phosphonate metabolism
protein. This family of proteins is observed in the
vicinity of other caharacterized genes involved in the
catabolism of phosphonates via the3 C-P lyase system
(GenProp0232), its function is unknown. These proteins
are members of the somewhat broader pfam06299 model
"Protein of unknown function (DUF1045)" which contains
proteins found in a different genomic context as well.
Length = 228
Score = 25.8 bits (57), Expect = 6.7
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 97 LILTHQGLAPLKKLYEDQVTSI--FIAPPSEAELIQRRIKR 135
L L+ L V + F AP +EAEL +RR +
Sbjct: 107 LRPAA-PCPALQALAAACVRELDPFRAPLTEAELARRRPDQ 146
>gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes an multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHPM, Nitrile Hydratase
Propeptide Microcin.
Length = 710
Score = 25.7 bits (57), Expect = 6.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 7 LIGASGVGETTIAKQV 22
L+G SG G++TIAK V
Sbjct: 510 LVGGSGSGKSTIAKLV 525
>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional.
Length = 216
Score = 25.7 bits (56), Expect = 7.0
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 6 VLIGASGVGETTIAKQVVLNSEYL----VMPVGVTTRRPRVDEK----QYID------YR 51
VLIG SGVG++ I + N L + V TR +V+ K Q D YR
Sbjct: 16 VLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYR 75
Query: 52 FISQSQFKGWKHTGLFIETTK 72
I+ + ++G L + TK
Sbjct: 76 AITSAYYRGAVGALLVYDITK 96
>gnl|CDD|181235 PRK08118, PRK08118, topology modulation protein; Reviewed.
Length = 167
Score = 25.7 bits (57), Expect = 7.2
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Query: 6 VLIGASGVGETTIAKQVVLNSEYLVMPV 33
+LIG+ G G++T+A+Q+ E L +PV
Sbjct: 5 ILIGSGGSGKSTLARQL---GEKLNIPV 29
>gnl|CDD|177379 PHA02544, 44, clamp loader, small subunit; Provisional.
Length = 316
Score = 25.7 bits (57), Expect = 7.4
Identities = 8/31 (25%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 3 HIFVLIGASGVGETTIAKQVV--LNSEYLVM 31
++ + + G G+TT+AK + + +E L +
Sbjct: 44 NMLLHSPSPGTGKTTVAKALCNEVGAEVLFV 74
>gnl|CDD|162958 TIGR02639, ClpA, ATP-dependent Clp protease ATP-binding subunit
clpA.
Length = 731
Score = 25.8 bits (57), Expect = 7.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 5 FVLIGASGVGETTIAKQ 21
F+ G +GVG+T +AKQ
Sbjct: 487 FLFTGPTGVGKTELAKQ 503
>gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 25.7 bits (57), Expect = 7.8
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 6 VLIGASGVGETTIA 19
L+G+SGVG++T+
Sbjct: 199 ALLGSSGVGKSTLV 212
>gnl|CDD|168472 PRK06217, PRK06217, hypothetical protein; Validated.
Length = 183
Score = 25.4 bits (56), Expect = 8.1
Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 1 MAHIFVLIGASGVGETTIA 19
M I + GASG G TT+
Sbjct: 1 MMRIHIT-GASGSGTTTLG 18
>gnl|CDD|182388 PRK10337, PRK10337, sensor protein QseC; Provisional.
Length = 449
Score = 25.4 bits (56), Expect = 9.0
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 95 ILLILTHQGLAPLKKL 110
IL++L + LAPLKKL
Sbjct: 177 ILMVLLGRELAPLKKL 192
>gnl|CDD|163223 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members
of this protein family are the bacterial ATP-dependent
chaperone ClpB. This protein belongs to the AAA family,
ATPases associated with various cellular activities
(pfam00004). This molecular chaperone does not act as a
protease, but rather serves to disaggregate misfolded
and aggregated proteins.
Length = 852
Score = 25.3 bits (56), Expect = 9.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 6 VLIGASGVGETTIA 19
VLIG GVG+T I
Sbjct: 198 VLIGEPGVGKTAIV 211
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.323 0.140 0.416
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,166,183
Number of extensions: 200188
Number of successful extensions: 593
Number of sequences better than 10.0: 1
Number of HSP's gapped: 586
Number of HSP's successfully gapped: 66
Length of query: 185
Length of database: 5,994,473
Length adjustment: 88
Effective length of query: 97
Effective length of database: 4,092,969
Effective search space: 397017993
Effective search space used: 397017993
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.7 bits)