Query gi|254781198|ref|YP_003065611.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 117 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 23:10:09 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781198.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1tu9_A Hypothetical protein P 32.3 31 0.00091 16.3 2.3 51 9-59 76-126 (134) 2 >1kol_A Formaldehyde dehydroge 13.3 89 0.0026 13.7 1.4 23 44-66 163-185 (223) 3 >1cg5_A Protein (hemoglobin); 12.8 77 0.0023 14.1 1.0 15 99-113 125-139 (141) 4 >1dc1_A Bsobi restriction endo 12.0 93 0.0028 13.6 1.2 24 20-45 18-41 (82) 5 >1s5j_A DNA polymerase I; repl 11.9 79 0.0023 14.0 0.8 13 17-29 8-20 (67) 6 >1mof_A Moloney murine leukemi 11.1 1.2E+02 0.0035 13.0 1.9 21 44-64 12-32 (55) 7 >1y4m_A HERV-FRD_6P24.1 provir 10.8 1.2E+02 0.0036 12.9 1.9 21 44-64 10-30 (53) 8 >2waq_C DNA-directed RNA polym 10.1 95 0.0028 13.5 0.7 29 33-61 11-40 (63) 9 >3gpu_A DNA glycosylase; DNA g 8.9 1.4E+02 0.004 12.7 1.1 35 7-41 50-84 (124) 10 >1s4x_A Integrin beta-3; cell 8.5 1.5E+02 0.0044 12.4 1.4 21 85-105 15-35 (67) No 1 >>1tu9_A Hypothetical protein PA3967; structural genomics, heme, hemoglobin, PSI, protein structure initiative; HET: HEM; 1.20A {Pseudomonas aeruginosa PAO1} (A:) Probab=32.31 E-value=31 Score=16.33 Aligned_cols=51 Identities=8% Similarity=0.062 Sum_probs=34.1 Q ss_pred HHCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 430456778998678510012202552521799877666768999999950 Q gi|254781198|r 9 VMDTNHKGSNLPPEEIKNIQDHRITLLEKNYERLSDKVEASHTKLMEAILD 59 (117) Q Consensus 9 vmdtnhkgsnlppeeikniqdhritlleknyerlsdkveashtklmeaild 59 (117) -+-..|++-++.|+..+.....-+..+++.....++.++++-++++..|.. T Consensus 76 ~lg~~H~~~gv~~~~f~~~~~~ll~~l~~~lg~~~~~~~~AW~~~~~~i~~ 126 (134) T 1tu9_A 76 GASHSRAALDIRPELYDLWLDALLMAVAEHDRDCDAETRDAWRDVMGRGIA 126 (134) T ss_dssp HHHTSTTTTCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH T ss_conf 988873147998899999999999999988477999999999999999999 No 2 >>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} (A:1-165,A:341-398) Probab=13.34 E-value=89 Score=13.71 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=17.0 Q ss_pred HHHHHHHHHHHHHHHCCHHHHHE Q ss_conf 76667689999999507432110 Q gi|254781198|r 44 DKVEASHTKLMEAILDNREDIAN 66 (117) Q Consensus 44 dkveashtklmeaildnredian 66 (117) +-.-.-|..||.|||-.|-.||. T Consensus 163 ~L~~~~~~~~~~~~~~~~~~~~~ 185 (223) T 1kol_A 163 DLTMKYNRALMQAIMWDRINIAE 185 (223) T ss_dssp HHGHHHHHHHHHHHHTTSCCHHH T ss_pred HHHHHHHHHHHHHHHCCCCCCCC T ss_conf 34399999999999869998746 No 3 >>1cg5_A Protein (hemoglobin); oxygen transport; HET: HEM; 1.60A {Dasyatis akajei} (A:) Probab=12.84 E-value=77 Score=14.07 Aligned_cols=15 Identities=13% Similarity=0.211 Sum_probs=7.5 Q ss_pred HHHHHHHHHHHHHCC Q ss_conf 999999999986321 Q gi|254781198|r 99 ISICLRFLANVMDKG 113 (117) Q Consensus 99 isiclrflanvmdkg 113 (117) -..++.+++++|.+| T Consensus 125 W~~~~~~i~~~l~~~ 139 (141) T 1cg5_A 125 VDKFLELVAYELSSC 139 (141) T ss_dssp HHHHHHHHHHHHTTT T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999999765 No 4 >>1dc1_A Bsobi restriction endonuclease; protein-DNA complex, restriction endonuclease, thermophilic enzyme; HET: DNA; 1.70A {Bacillus stearothermophilus} (A:41-122) Probab=12.00 E-value=93 Score=13.59 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=17.8 Q ss_pred CHHHHHCCHHHHHHHHHHHHHHHHHH Q ss_conf 86785100122025525217998776 Q gi|254781198|r 20 PPEEIKNIQDHRITLLEKNYERLSDK 45 (117) Q Consensus 20 ppeeikniqdhritlleknyerlsdk 45 (117) -|+++-+|.|-+.+||+-. .+||| T Consensus 18 ~p~dll~i~dI~~~LltAa--GvSdK 41 (82) T 1dc1_A 18 TPKDLLYLEDIQDALLYAS--GISDK 41 (82) T ss_dssp SGGGGGGCGGGHHHHHHHT--TCCHH T ss_pred CHHHHHHHHHHHHHHHHHC--CCCHH T ss_conf 9899852553588998861--65578 No 5 >>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} (A:50-116) Probab=11.86 E-value=79 Score=14.01 Aligned_cols=13 Identities=23% Similarity=0.598 Sum_probs=10.7 Q ss_pred CCCCHHHHHCCHH Q ss_conf 8998678510012 Q gi|254781198|r 17 SNLPPEEIKNIQD 29 (117) Q Consensus 17 snlppeeikniqd 29 (117) +++||||++.+.+ T Consensus 8 t~~~Peei~~~~~ 20 (67) T 1s5j_A 8 VDLEPDKVGKIPK 20 (67) T ss_dssp ESSCHHHHTTCHH T ss_pred EECCHHHHHHHHH T ss_conf 9887788789999 No 6 >>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN, viral protein; 1.70A {Moloney murine leukemia virus} (A:) Probab=11.14 E-value=1.2e+02 Score=12.99 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=16.9 Q ss_pred HHHHHHHHHHHHHHHCCHHHH Q ss_conf 766676899999995074321 Q gi|254781198|r 44 DKVEASHTKLMEAILDNREDI 64 (117) Q Consensus 44 dkveashtklmeaildnredi 64 (117) .+.+.|.+.|.+.+|.||-.. T Consensus 12 ~~L~~~l~sla~VvlQNRr~L 32 (55) T 1mof_A 12 SNLEKSLTSLSEVVLQNRRGL 32 (55) T ss_dssp HHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHH T ss_conf 999999989999999887766 No 7 >>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotein; coat protein, membrane fusion, endogenous retrovirus, membrane protein; 1.60A {Homo sapiens} (A:) Probab=10.80 E-value=1.2e+02 Score=12.93 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=16.9 Q ss_pred HHHHHHHHHHHHHHHCCHHHH Q ss_conf 766676899999995074321 Q gi|254781198|r 44 DKVEASHTKLMEAILDNREDI 64 (117) Q Consensus 44 dkveashtklmeaildnredi 64 (117) .+.+.+.+.|.+.+|.||-.. T Consensus 10 ~~l~~~l~sla~vvlQNRr~L 30 (53) T 1y4m_A 10 TTMQEQIDSLAAVVLQNRRGL 30 (53) T ss_dssp HHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHH T ss_conf 999998889999999987765 No 8 >>2waq_C DNA-directed RNA polymerase RPO1C subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_C 3hkz_C 2pmz_C (C:1-63) Probab=10.11 E-value=95 Score=13.55 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=22.5 Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHCCH Q ss_conf 55252179987766676-899999995074 Q gi|254781198|r 33 TLLEKNYERLSDKVEAS-HTKLMEAILDNR 61 (117) Q Consensus 33 tlleknyerlsdkveas-htklmeaildnr 61 (117) ..+|+..+.+|+|+.++ +.+|-++|+++. T Consensus 11 ~Yle~kl~q~s~klP~kii~dLr~~i~n~~ 40 (63) T 2waq_C 11 SYLEEKVKQASNILPQKIVEDLKNLISNKE 40 (63) T ss_dssp CCSHHHHHHHTTTGGGSCCTHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHCCCC T ss_conf 669999987521243999999998743552 No 9 >>3gpu_A DNA glycosylase; DNA glycosylase, DNA repair, damage search, base extrusion; HET: DNA 8OG; 1.62A {Geobacillus stearothermophilus} PDB: 3gpx_A* 3gq3_A* 2f5n_A 2f5o_A 2f5p_A 3gp1_A* 3gq4_A* 3gpy_A* 3gq5_A* 3gpp_A* 2f5q_A* 2f5s_A* 1l1z_A* 1l1t_A* 1l2b_A* 1l2c_A* 1l2d_A* 1r2z_A* 1r2y_A* 3jr5_A* ... (A:133-256) Probab=8.88 E-value=1.4e+02 Score=12.65 Aligned_cols=35 Identities=11% Similarity=0.282 Sum_probs=0.0 Q ss_pred HHHHCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHH Q ss_conf 55430456778998678510012202552521799 Q gi|254781198|r 7 RSVMDTNHKGSNLPPEEIKNIQDHRITLLEKNYER 41 (117) Q Consensus 7 rsvmdtnhkgsnlppeeikniqdhritlleknyer 41 (117) ++-+....++++|++++++.+-+.-...|+..+++ T Consensus 50 ~a~ihP~~~~~~Ls~~~~~~L~~~i~~vl~~ai~~ 84 (124) T 3gpu_A 50 RAGILPGRPAASLSSKEIERLHEEMVATIGEAVMK 84 (124) T ss_dssp HHTCCTTSBGGGCCHHHHHHHHHHHHHHHHHHHC- T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 81688477565554666767899999999999975 No 10 >>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} (A:) Probab=8.51 E-value=1.5e+02 Score=12.42 Aligned_cols=21 Identities=19% Similarity=0.033 Sum_probs=0.0 Q ss_pred HHHHHHHCCHHHHHHHHHHHH Q ss_conf 888887600257769999999 Q gi|254781198|r 85 MLGLIWKIPATAIGISICLRF 105 (117) Q Consensus 85 mlgliwkipataigisiclrf 105 (117) .+|||||+-.+.-.-.---+| T Consensus 15 lIgLiwKll~~i~DrREyakF 35 (67) T 1s4x_A 15 PRGSHMKLLITIHDRKEFAKF 35 (67) T ss_dssp ------CHHHHHHHHHHHHHH T ss_pred CCCCCEEEEEEEEEHHHHHHH T ss_conf 377635899985308999999 Done!