Query gi|254781198|ref|YP_003065611.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 117
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 01:46:02 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781198.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ke4_A CDC42-interacting prote 34.4 26 0.0011 15.9 4.7 51 16-67 8-60 (98)
2 1xou_A ESPA; coiled coil, heli 26.2 11 0.00048 17.9 0.0 43 18-60 102-144 (192)
3 3kyp_A Pfnaps, nucleosome asse 24.5 39 0.0016 14.9 3.7 43 22-65 3-45 (193)
4 1x46_A Globin chain, hemoglobi 18.6 35 0.0015 15.1 1.2 12 100-111 136-147 (150)
5 1ygt_A Cytoplasmic dynein ligh 13.1 63 0.0026 13.7 1.4 51 10-62 1-53 (111)
6 3m1f_V VOPL, putative uncharac 11.4 76 0.0032 13.2 1.4 12 48-59 4-15 (31)
7 3lay_A Zinc resistance-associa 10.8 86 0.0036 12.9 1.5 77 15-92 64-143 (175)
8 1y4m_A HERV-FRD_6P24.1 proviru 7.7 1.1E+02 0.0048 12.2 2.5 23 42-64 8-30 (53)
9 3m91_A Proteasome-associated A 6.3 84 0.0035 13.0 -0.2 26 46-71 21-46 (51)
10 2blf_B SORB, sulfite\:cytochro 6.2 1.4E+02 0.0058 11.8 1.2 13 16-28 62-74 (81)
No 1
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=34.40 E-value=26 Score=15.90 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=41.3
Q ss_pred CCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH--HHHEE
Q ss_conf 78998678510012202552521799877666768999999950743--21102
Q gi|254781198|r 16 GSNLPPEEIKNIQDHRITLLEKNYERLSDKVEASHTKLMEAILDNRE--DIANV 67 (117)
Q Consensus 16 gsnlppeeikniqdhritlleknyerlsdkveashtklmeaildnre--dianv 67 (117)
-|.||||.-+-.--..|..+++..++..+.-|+ -+|+..+.-+|-. |..+|
T Consensus 8 fs~lPPeqRrkkL~~ki~~l~~ei~ke~~~ReG-l~KM~~vY~~nP~~Gd~~sv 60 (98)
T 2ke4_A 8 FSHLPPEQQRKRLQQQLEERSRELQKEVDQREA-LKKMKDVYEKTPQMGDPASL 60 (98)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTH-HHHHHHHHHHCGGGCCGGGS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCHHHH
T ss_conf 556986999999999999999999999998999-99999999868777887778
No 2
>1xou_A ESPA; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.1
Probab=26.22 E-value=11 Score=17.90 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=27.1
Q ss_pred CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9986785100122025525217998776667689999999507
Q gi|254781198|r 18 NLPPEEIKNIQDHRITLLEKNYERLSDKVEASHTKLMEAILDN 60 (117)
Q Consensus 18 nlppeeikniqdhritlleknyerlsdkveashtklmeaildn 60 (117)
.|||+-|+-+.||+|...-+..+.+-++.....-....|-||+
T Consensus 102 ~LP~dVi~Ymrdn~~~I~~~~Iddy~~~L~kG~LqaVKaALd~ 144 (192)
T 1xou_A 102 QLPDEVISYINDPRNDITISGIDNINAQLGAGDLQTVKAAISA 144 (192)
T ss_dssp -------------------------------------------
T ss_pred CCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 7999999999854987563568887645472109999999870
No 3
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=24.54 E-value=39 Score=14.90 Aligned_cols=43 Identities=12% Similarity=0.262 Sum_probs=35.5
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 78510012202552521799877666768999999950743211
Q gi|254781198|r 22 EEIKNIQDHRITLLEKNYERLSDKVEASHTKLMEAILDNREDIA 65 (117)
Q Consensus 22 eeikniqdhritlleknyerlsdkveashtklmeaildnredia 65 (117)
++++++|+-.. -|++.+++---.+|....+++..+.+.|.+|-
T Consensus 3 ~~L~~lq~e~~-~l~~~~~~e~~~le~k~~~~~~ply~kR~~ii 45 (193)
T 3kyp_A 3 QDFEDIQKDIE-QLDIKCAHEQMNIQKQYDEKKKPLFEKRDEII 45 (193)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf 89999999999-99999999999999999998686999998987
No 4
>1x46_A Globin chain, hemoglobin component VII; diptera, midge larva, oxygen storage/transport complex; HET: HEM; 1.50A {Tokunagayusurika akamusi}
Probab=18.60 E-value=35 Score=15.13 Aligned_cols=12 Identities=8% Similarity=0.014 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999863
Q gi|254781198|r 100 SICLRFLANVMD 111 (117)
Q Consensus 100 siclrflanvmd 111 (117)
.-++..++++|-
T Consensus 136 ~~~~~~~~~vi~ 147 (150)
T 1x46_A 136 DSAFNNMYSVVF 147 (150)
T ss_dssp HHHHHHHHHHHG
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999998
No 5
>1ygt_A Cytoplasmic dynein light chain; domain swapping, protein transport; 1.70A {Drosophila melanogaster} PDB: 2pg1_E 3fm7_A
Probab=13.13 E-value=63 Score=13.70 Aligned_cols=51 Identities=22% Similarity=0.309 Sum_probs=33.3
Q ss_pred HCCCCCCCCCCHHHHHCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 30456778998678510012202--552521799877666768999999950743
Q gi|254781198|r 10 MDTNHKGSNLPPEEIKNIQDHRI--TLLEKNYERLSDKVEASHTKLMEAILDNRE 62 (117)
Q Consensus 10 mdtnhkgsnlppeeikniqdhri--tlleknyerlsdkveashtklmeaildnre 62 (117)
||........+|+++++|-...+ .|-.+.|+. +++..--..+.+.|++.--
T Consensus 1 m~~~~e~~~F~~~~v~~Ii~~~l~~~L~~~~Y~~--~~~~~~~~~i~~~i~~~lk 53 (111)
T 1ygt_A 1 MDDSREESQFIVDDVSKTIKEAIETTIGGNAYQH--DKVNNWTGQVVENCLTVLT 53 (111)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHHTTCCCCH--HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHHHHHHHH
T ss_conf 9974435773889999999999999768898896--9999999999999999998
No 6
>3m1f_V VOPL, putative uncharacterized protein VPA1370; actin, actin-binding protein, crosslinking, nucleator, prote protein interaction; HET: HIC ATP; 2.89A {Oryctolagus cuniculus}
Probab=11.43 E-value=76 Score=13.23 Aligned_cols=12 Identities=50% Similarity=0.711 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHC
Q ss_conf 768999999950
Q gi|254781198|r 48 ASHTKLMEAILD 59 (117)
Q Consensus 48 ashtklmeaild 59 (117)
..|.||||.|-.
T Consensus 4 edhsklmeqirq 15 (31)
T 3m1f_V 4 EDHSKLMEQIRQ 15 (31)
T ss_dssp TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
T ss_conf 059999999996
No 7
>3lay_A Zinc resistance-associated protein; salmonella typhimurium LT2, ZRAP, periplasm, structural genomics; 2.70A {Salmonella enterica subsp}
Probab=10.78 E-value=86 Score=12.92 Aligned_cols=77 Identities=13% Similarity=0.100 Sum_probs=46.0
Q ss_pred CCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---HHHHHEEEEEEEEEEEEEHHHHHHHHHHHHH
Q ss_conf 7789986785100122025525217998776667689999999507---4321102568743577501436898888876
Q gi|254781198|r 15 KGSNLPPEEIKNIQDHRITLLEKNYERLSDKVEASHTKLMEAILDN---REDIANVRIEVANVRIEVANVRTEMLGLIWK 91 (117)
Q Consensus 15 kgsnlppeeikniqdhritlleknyerlsdkveashtklmeaildn---redianvrievanvrievanvrtemlgliwk 91 (117)
.+++|.||....+++-+-....+. ..|-.+..+.+..|...+... .+.|....-|++..+-+...-|.+|---+.+
T Consensus 64 ~~~~LT~EQq~~~~~I~~~~~~~~-~~Lr~qL~akr~EL~aLl~~~~~D~akI~aL~~eI~~Lr~qL~~~R~~~~~qm~k 142 (175)
T 3lay_A 64 GGSPLTTEQQATAQKIYDDYYTQT-SALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQ 142 (175)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 788899999999999999999999-9999999999999999971799999999999999999999999999999999998
Q ss_pred C
Q ss_conf 0
Q gi|254781198|r 92 I 92 (117)
Q Consensus 92 i 92 (117)
.
T Consensus 143 ~ 143 (175)
T 3lay_A 143 A 143 (175)
T ss_dssp T
T ss_pred H
T ss_conf 4
No 8
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotein; coat protein, membrane fusion, endogenous retrovirus, membrane protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=7.71 E-value=1.1e+02 Score=12.21 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 87766676899999995074321
Q gi|254781198|r 42 LSDKVEASHTKLMEAILDNREDI 64 (117)
Q Consensus 42 lsdkveashtklmeaildnredi 64 (117)
--.+.+.|.+.+.+.+|.||-..
T Consensus 8 si~~L~~~l~sls~vvlQNRr~L 30 (53)
T 1y4m_A 8 ALTTMQEQIDSLAAVVLQNRRGL 30 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998889999999988876
No 9
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=6.27 E-value=84 Score=12.97 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHCCHHHHHEEEEEE
Q ss_conf 66768999999950743211025687
Q gi|254781198|r 46 VEASHTKLMEAILDNREDIANVRIEV 71 (117)
Q Consensus 46 veashtklmeaildnredianvriev 71 (117)
+.+-..||+...-+-|+.|+..|-||
T Consensus 21 ls~qNekL~~TLrEAR~qiv~LreEV 46 (51)
T 3m91_A 21 LAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99857899999999999999999999
No 10
>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*
Probab=6.22 E-value=1.4e+02 Score=11.77 Aligned_cols=13 Identities=15% Similarity=0.207 Sum_probs=6.5
Q ss_pred CCCCCHHHHHCCH
Q ss_conf 7899867851001
Q gi|254781198|r 16 GSNLPPEEIKNIQ 28 (117)
Q Consensus 16 gsnlppeeikniq 28 (117)
|..++++|++.|-
T Consensus 62 ga~i~~~e~~~I~ 74 (81)
T 2blf_B 62 HAPVDEADAKAIA 74 (81)
T ss_dssp CCCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHH
T ss_conf 9998888899999
Done!