RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781198|ref|YP_003065611.1| guanylate kinase [Candidatus
Liberibacter asiaticus str. psy62]
         (117 letters)



>3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880,
           FABD, xanthomonas oryzae PV. oryzae KACC10331; 1.60A
           {Xanthomonas oryzae PV} PDB: 3een_A (A:1-129,A:203-314)
          Length = 241

 Score = 24.7 bits (53), Expect = 4.3
 Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 41  RLSDKVEASHTKLMEAILDN-REDIANVRIEVANVRIEVANVRTEML 86
           +       +HT LM    +   E +A +      + + V NV   + 
Sbjct: 121 QFMQAAAPAHTPLMRDAANQLGEAMAGLSWHAPQIPV-VQNVDARVH 166


>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA
          binding protein/DNA complex; HET: DNA; 2.25A
          {Saccharomyces cerevisiae} (A:94-246)
          Length = 153

 Score = 24.5 bits (53), Expect = 5.5
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 6  RRSVMDTNHKGSNLPPEEIKNIQDHRITLLEKNYERLSDKVEASHTK 52
          R   MD NH   + P       Q  R  +  + ++  +++  A+HT+
Sbjct: 48 RNMTMDPNHVPGSEPNFAAYRTQSRRGPIAREFFKHFAEEH-AAHTE 93


>1nm2_A Malonyl COA:acyl carrier protein malonyltransferase;
           alpha/beta hydrolase-like core; 2.00A {Streptomyces
           coelicolor A3} (A:1-134,A:202-317)
          Length = 250

 Score = 24.3 bits (52), Expect = 6.5
 Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 2/46 (4%)

Query: 42  LSDKVEASHTKLMEAILDN-REDIANVRIEVANVRIEVANVRTEML 86
           +++    +HT+ M   +D   E    +      V   V+N     +
Sbjct: 127 MAEAAAVTHTRHMAPAVDKLAEAAKALTPADPKVTY-VSNKDGRAV 171


>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2
           intergenic region; yeast protein, ATP binding protein;
           2.25A {Saccharomyces cerevisiae} (A:1-73,A:153-290)
          Length = 211

 Score = 24.1 bits (52), Expect = 7.0
 Identities = 4/55 (7%), Positives = 16/55 (29%)

Query: 14  HKGSNLPPEEIKNIQDHRITLLEKNYERLSDKVEASHTKLMEAILDNREDIANVR 68
             G  +  E++    D  +   +                 +   +D+  ++ + +
Sbjct: 152 KVGKGMTDEQVHAFVDRYMPSYKLYLNDFVRSESLGSIATLTLGIDSNRNVYSTK 206


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.320    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0523    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 838,502
Number of extensions: 33368
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 17
Length of query: 117
Length of database: 4,956,049
Length adjustment: 70
Effective length of query: 47
Effective length of database: 2,589,699
Effective search space: 121715853
Effective search space used: 121715853
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.5 bits)