BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781198|ref|YP_003065611.1| guanylate kinase [Candidatus
Liberibacter asiaticus str. psy62]
         (117 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781198|ref|YP_003065611.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 117

 Score =  238 bits (608), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MNSMERRSVMDTNHKGSNLPPEEIKNIQDHRITLLEKNYERLSDKVEASHTKLMEAILDN 60
           MNSMERRSVMDTNHKGSNLPPEEIKNIQDHRITLLEKNYERLSDKVEASHTKLMEAILDN
Sbjct: 1   MNSMERRSVMDTNHKGSNLPPEEIKNIQDHRITLLEKNYERLSDKVEASHTKLMEAILDN 60

Query: 61  REDIANVRIEVANVRIEVANVRTEMLGLIWKIPATAIGISICLRFLANVMDKGIHLF 117
           REDIANVRIEVANVRIEVANVRTEMLGLIWKIPATAIGISICLRFLANVMDKGIHLF
Sbjct: 61  REDIANVRIEVANVRIEVANVRTEMLGLIWKIPATAIGISICLRFLANVMDKGIHLF 117


>gi|254780339|ref|YP_003064752.1| hypothetical protein CLIBASIA_01120 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 88

 Score = 34.7 bits (78), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 3/50 (6%)

Query: 51  TKLMEAILDNREDIANVRIEVANVRIEVANVRTEMLGLIWKIPATAIGIS 100
           + L EAI +NR +IAN+R +++   ++   +++E+  + WKI  T IG S
Sbjct: 8   SNLKEAITNNRVEIANIRADMSGTSMK---IQSEINNMSWKILTTMIGCS 54


>gi|254781224|ref|YP_003065637.1| hypothetical protein CLIBASIA_05655 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 103

 Score = 29.6 bits (65), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 20/84 (23%)

Query: 31 RITLLEKNYERLSDKVEASHTKLMEAILDNREDIANVRIE----VANVRIEVANVRTEM- 85
          R T LE     L+ K +     L +   + ++DIANVR E    +A+VR E+A  ++E+ 
Sbjct: 18 RFTKLETALPYLATKAD-----LADVRTELKQDIANVRTELKADIADVRTELACTKSELK 72

Query: 86 ----------LGLIWKIPATAIGI 99
                    +G+I  +  + IGI
Sbjct: 73 DAINSQTKWFMGIIVSVLVSTIGI 96


>537021.9.peg.472_1 
          Length = 369

 Score = 22.7 bits (47), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 32  ITLLEKNYERLSDKVEASHTKLMEAILD 59
           ++LL++   R +DK+  S  +LM A+ D
Sbjct: 205 LSLLDQAIARCNDKIVTSSVRLMLALAD 232


>gi|254780316|ref|YP_003064729.1| phenylalanyl-tRNA synthetase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 805

 Score = 21.2 bits (43), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 41  RLSDKVEASHTKLMEAILDNREDIANVR 68
           RLSD +E S   +  ++  NR D   VR
Sbjct: 145 RLSDYLELSDPIIDVSLTPNRSDCIGVR 172


>gi|255764494|ref|YP_003065050.2| molecular chaperone DnaK [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 652

 Score = 20.4 bits (41), Expect = 10.0,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 27/52 (51%)

Query: 5   ERRSVMDTNHKGSNLPPEEIKNIQDHRITLLEKNYERLSDKVEASHTKLMEA 56
           +RR  ++T +   +L     +++++H   + E   + + + ++A  T L +A
Sbjct: 523 KRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKSIRESIDALRTLLNDA 574


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.134    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,623
Number of Sequences: 1233
Number of extensions: 2515
Number of successful extensions: 20
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of query: 117
length of database: 328,796
effective HSP length: 63
effective length of query: 54
effective length of database: 251,117
effective search space: 13560318
effective search space used: 13560318
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 33 (17.3 bits)