Query gi|254781199|ref|YP_003065612.1| hypothetical protein CLIBASIA_05530 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 157 No_of_seqs 76 out of 78 Neff 4.5 Searched_HMMs 23785 Date Wed Jun 1 01:59:37 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781199.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3f1i_H Hepatocyte growth facto 25.0 29 0.0012 13.8 9.7 60 9-78 34-93 (98) 2 3bz1_T PSII-T, PSII-TC, photos 24.6 27 0.0011 14.0 1.7 10 139-148 9-18 (32) 3 2kxa_A Haemagglutinin HA2 chai 23.7 31 0.0013 13.7 1.8 23 9-31 1-23 (30) 4 3f5h_A Type I polyketide synth 14.1 49 0.0021 12.4 1.1 15 86-100 34-48 (68) 5 1xme_C Cytochrome C oxidase po 13.8 52 0.0022 12.2 2.0 12 142-153 18-29 (34) 6 1jb0_K Photosystem 1 reaction 11.4 48 0.002 12.5 0.3 32 125-156 4-37 (83) 7 1bzk_A Protein (BAND 3 anion t 11.3 44 0.0019 12.7 0.1 21 89-109 8-28 (43) 8 2rig_A Interferon-gamma; cytok 10.3 67 0.0028 11.5 1.7 10 23-32 27-36 (144) 9 3bz1_X Photosystem II PSBX pro 8.9 76 0.0032 11.2 2.4 16 7-22 13-28 (50) 10 1sf9_A YFHH hypothetical prote 7.1 91 0.0038 10.7 3.3 43 28-70 19-61 (128) No 1 >3f1i_H Hepatocyte growth factor-regulated tyrosine kinase substrate; HGS, ESCRT, ubiquitin, MVB, cytoplasm, endosome, membrane, metal-binding, phosphoprotein; 2.30A {Homo sapiens} Probab=24.95 E-value=29 Score=13.83 Aligned_cols=60 Identities=12% Similarity=0.299 Sum_probs=39.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 6899997422135799999999978879898899999999997211258999999899999877999999 Q gi|254781199|r 9 GLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLA 78 (157) Q Consensus 9 sLLgsLlGF~~S~lP~vld~f~~k~dkkheLe~~kl~~e~~~~~~~aq~~~~e~~~~~~e~~~~~~~~~~ 78 (157) +-.-+|---+++-||.+|++.++.-++. .-++.+|-.+. .+-+..+.+++++.++.++.. T Consensus 34 ssVQtLF~~lt~MH~qLL~~i~~~ee~R--~~yE~LQDkL~--------qIkdAR~ALdalReeHreklr 93 (98) T 3f1i_H 34 SAVLSLFQSINGMHPQLLELLNQLDERR--LYYEGLQDKLA--------QIRDARGALSALREEHREKLR 93 (98) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH T ss_conf 7899999999986699999999989999--88999999999--------999999999999999999999 No 2 >3bz1_T PSII-T, PSII-TC, photosystem II reaction center protein T; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_T* 2axt_T* 3bz2_T* 3kzi_T* 3a0b_T* 3a0h_T* Probab=24.61 E-value=27 Score=14.04 Aligned_cols=10 Identities=40% Similarity=1.228 Sum_probs=5.7 Q ss_pred HHHHHHHHHH Q ss_conf 9999999988 Q gi|254781199|r 139 IIACILGFWY 148 (157) Q Consensus 139 i~a~Ii~FWF 148 (157) |+||||+..| T Consensus 9 i~acii~lff 18 (32) T 3bz1_T 9 IFACIIALFF 18 (32) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999999999 No 3 >2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus} Probab=23.66 E-value=31 Score=13.68 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=15.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 68999974221357999999999 Q gi|254781199|r 9 GLFRFLLRFIPSGFERIVDVVSE 31 (157) Q Consensus 9 sLLgsLlGF~~S~lP~vld~f~~ 31 (157) +|+|.+-||++.+-|-..|=.-- T Consensus 1 g~fgaiagfie~gw~gmi~gwyg 23 (30) T 2kxa_A 1 GLFGAIAGFIEGGWTGMIDGWYG 23 (30) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC T ss_pred CHHHHHHHHHHCCCHHHHHHCCC T ss_conf 90477888885685023300013 No 4 >3f5h_A Type I polyketide synthase PIKAIII, type I polyketide synthase pikaiv fusion protein...; docking domain, pikromycin, H2-T2; 1.75A {Streptomyces venezuelae} Probab=14.13 E-value=49 Score=12.42 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=8.5 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 314369999886545 Q gi|254781199|r 86 KSGVKWVDGFTALIR 100 (157) Q Consensus 86 ~~~~~w~~~l~~sVR 100 (157) .+.-+-||+|++|.. T Consensus 34 ssneqlvdalraslk 48 (68) T 3f5h_A 34 SSNEQLVDALRASLK 48 (68) T ss_dssp HHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHH T ss_conf 248999999999987 No 5 >1xme_C Cytochrome C oxidase polypeptide IIA; cytochrome oxidase, heme, heme-AS, integral membrane protein, oxidoreductase; HET: BNG HEM HAS; 2.30A {Thermus thermophilus} SCOP: f.23.9.1 PDB: 2qpd_C* 2qpe_C* 3bvd_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* Probab=13.81 E-value=52 Score=12.25 Aligned_cols=12 Identities=42% Similarity=0.609 Sum_probs=7.3 Q ss_pred HHHHHHHHHHHH Q ss_conf 999998857786 Q gi|254781199|r 142 CILGFWYTDKIV 153 (157) Q Consensus 142 ~Ii~FWFg~R~~ 153 (157) .|+-||||--++ T Consensus 18 ~ilvfw~gv~av 29 (34) T 1xme_C 18 TILVFWLGVYAV 29 (34) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999998 No 6 >1jb0_K Photosystem 1 reaction centre subunit X; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.30.1.1 Probab=11.38 E-value=48 Score=12.46 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=22.3 Q ss_pred HHHHHHHCCHHHHH--HHHHHHHHHHHHHHHHHH Q ss_conf 88999970988899--999999998857786640 Q gi|254781199|r 125 NSDPLTLLSPFTQE--IIACILGFWYTDKIVQKK 156 (157) Q Consensus 125 ~~a~~~lws~~~qa--i~a~Ii~FWFg~R~~~k~ 156 (157) +.++.+-||+.... |.+.|+.+-+|.++++++ T Consensus 4 a~~P~T~Wsp~va~iMi~cNl~ai~ig~~~I~~p 37 (83) T 1jb0_K 4 ATLPDTTWTPSVGLVVILCNLFAIALGRYAIQSR 37 (83) T ss_dssp ----------------CHHHHHHHHHHHC-CCCS T ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 0378997785157999999999999999886179 No 7 >1bzk_A Protein (BAND 3 anion transport protein); human erythrocyte anion transporter, transmembrane, synthetic peptide; NMR {Synthetic} SCOP: j.35.1.1 Probab=11.27 E-value=44 Score=12.69 Aligned_cols=21 Identities=14% Similarity=0.347 Sum_probs=14.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 369999886545899999999 Q gi|254781199|r 89 VKWVDGFTALIRPLTTFFWII 109 (157) Q Consensus 89 ~~w~~~l~~sVRPvity~f~~ 109 (157) |.|.|+++..+=|.+-+.+|+ T Consensus 8 SD~~Dg~~~q~laa~iflyFA 28 (43) T 1bzk_A 8 SDITDAFSPQVLAAVIFIYFA 28 (43) T ss_dssp HHHTTSSCSHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHH T ss_conf 888875317899999999999 No 8 >2rig_A Interferon-gamma; cytokine; 2.30A {Oryctolagus cuniculus} SCOP: a.26.1.3 Probab=10.30 E-value=67 Score=11.54 Aligned_cols=10 Identities=0% Similarity=0.401 Sum_probs=3.7 Q ss_pred HHHHHHHHHH Q ss_conf 9999999997 Q gi|254781199|r 23 ERIVDVVSEY 32 (157) Q Consensus 23 P~vld~f~~k 32 (157) |..++.+++. T Consensus 27 plFl~ilknw 36 (144) T 2rig_A 27 PLFLNILRNW 36 (144) T ss_pred CCHHHHHHHH T ss_conf 6028854111 No 9 >3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X* 3kzi_X* 3a0b_X* 3a0h_X* Probab=8.88 E-value=76 Score=11.20 Aligned_cols=16 Identities=13% Similarity=0.337 Sum_probs=7.4 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 5368999974221357 Q gi|254781199|r 7 AGGLFRFLLRFIPSGF 22 (157) Q Consensus 7 ~~sLLgsLlGF~~S~l 22 (157) .|||-|+++|..+..+ T Consensus 13 tpslkgffigllsgav 28 (50) T 3bz1_X 13 TPSLKGFFIGLLSGAV 28 (50) T ss_dssp CHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHH T ss_conf 6003245777622018 No 10 >1sf9_A YFHH hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative, midwest center for structural genomics; 1.71A {Bacillus subtilis} SCOP: b.34.15.1 Probab=7.15 E-value=91 Score=10.71 Aligned_cols=43 Identities=19% Similarity=0.058 Sum_probs=29.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999788798988999999999972112589999998999998 Q gi|254781199|r 28 VVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELK 70 (157) Q Consensus 28 ~f~~k~dkkheLe~~kl~~e~~~~~~~aq~~~~e~~~~~~e~~ 70 (157) +|+...+.|+==+|.+-++++..+.+.-+++.+|-.+..-|.. T Consensus 19 ~~~~~~meKRySeMS~~EL~~EIa~L~EKaRKAEq~GivnEya 61 (128) T 1sf9_A 19 YFQSNAMEKRYSQMTPHELNTEIALLSEKARKAEQHGIINELA 61 (128) T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH T ss_pred EEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH T ss_conf 4422255677776699999999999999999999806725999 Done!