RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781199|ref|YP_003065612.1| hypothetical protein
CLIBASIA_05530 [Candidatus Liberibacter asiaticus str. psy62]
(157 letters)
>gnl|CDD|148704 pfam07253, Gypsy, Gypsy protein. This family consists of several
Gypsy/Env proteins from Drosophila and Ceratitis fruit
fly species. Gypsy is an endogenous retrovirus of
Drosophila melanogaster. Phylogenetic studies suggest
that occasional horizontal transfer events of gypsy
occur between Drosophila species. gypsy possesses
infective properties associated with the products of the
envelope gene that might be at the origin of these
interspecies transfers.
Length = 472
Score = 31.4 bits (71), Expect = 0.12
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 14/80 (17%)
Query: 36 KQSIEYDKLKLEMAKND--SSTQLDLAEIKAGIEELKIDKPIRLARIEAQKVKSGVKWVD 93
K+ I+ KL + +AK + + T LD A++++ +EE K + PI +EA K+K
Sbjct: 167 KEEIQNLKLTITLAKLNIVNPTILDHADLESLVEENKENTPIVEL-LEAAKIK------- 218
Query: 94 GFTALIRPLTTFFWIIVYPL 113
+++ II YP
Sbjct: 219 ----VLQSENIIHIIIKYPK 234
>gnl|CDD|162705 TIGR02103, pullul_strch, alpha-1,6-glucosidases, pullulanase-type.
Members of this protein family include secreted (or
membrane-anchored) pullulanases of Gram-negative
bacteria and pullulanase-type starch debranching enzymes
of plants. Both enzymes hydrolyze alpha-1,6 glycosidic
linkages. Pullulan is an unusual, industrially important
polysaccharide in which short alpha-1,4 chains
(maltotriose) are connected in alpha-1,6 linkages.
Enzymes that cleave alpha-1,6 linkages in pullulan and
release maltotriose are called pullulanases although
pullulan itself may not be the natural substrate. This
family is closely homologous to, but architecturally
different from, the Gram-positive pullulanases of
Gram-positive bacteria (TIGR02102).
Length = 898
Score = 30.6 bits (69), Expect = 0.19
Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 16/100 (16%)
Query: 29 VSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLARIEAQKVKSG 88
V+E K I+ KL DS + +G + + D E Q + +
Sbjct: 314 VNEEKEKVADIQQPFSKLCELNPDSKSSEFAGYCDSGSQLKQNDSK---DNPEVQALNTL 370
Query: 89 VKWVDGFTALIRPLTTFFWIIVYPLLVWWSVKEGMFNSDP 128
V+ +D + P ++V EG + +DP
Sbjct: 371 VRNLDSYNWGYDP-------------FHYTVPEGSYATDP 397
>gnl|CDD|185380 PRK15483, PRK15483, type III restriction-modification system StyLTI
enzyme res; Provisional.
Length = 986
Score = 29.2 bits (66), Expect = 0.46
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 18 IPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDK 73
+P V +V KK + K E+A + +LA+I G E L I+
Sbjct: 283 MPEEQANNVKIVDSVTAKKLILRRGKKTFELAVGE-----NLADIDPGFEGLTIEY 333
>gnl|CDD|185669 PTZ00491, PTZ00491, major vault protein; Provisional.
Length = 850
Score = 28.1 bits (63), Expect = 0.96
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 34 TKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLARIEAQKVK 86
K IE + LE + +L+L +A EL+I K LA IEA K +
Sbjct: 743 AKALRIEAEAE-LEKLRKRQ--ELELEYEQA-QNELEIAKAKELADIEATKFE 791
>gnl|CDD|163538 TIGR03826, YvyF, flagellar operon protein TIGR03826. This gene
is found in flagellar operons of Bacillus-related
organisms. Its function has not been determined and an
official gene symbol has not been assigned, although
the gene is designated yvyF in B. subtilus. A tentative
assignment as a regulator is suggested in the NCBI
record GI:16080597.
Length = 137
Score = 27.7 bits (62), Expect = 1.3
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 14/60 (23%)
Query: 23 ERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLARIEA 82
ER + V ++L K + N +T ++ E + G+ E I K IR R++
Sbjct: 29 EREFEKVYKFLRKHE-------------NRQATVSEIVE-ETGVSEKLILKFIREGRLQL 74
>gnl|CDD|180570 PRK06457, PRK06457, pyruvate dehydrogenase; Provisional.
Length = 549
Score = 27.5 bits (61), Expect = 1.8
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 9/75 (12%)
Query: 19 PSGFERIVDV-------VSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKI 71
S + +DV V+E+L + DK E+ K LD K K
Sbjct: 289 NSNIGKRLDVDLSYPIPVAEFLNIDIEEKSDKFYEEL-KGKKEDWLDSIS-KQENSLDKP 346
Query: 72 DKPIRLARIEAQKVK 86
KP R+A I +QK K
Sbjct: 347 MKPQRVAYIVSQKCK 361
>gnl|CDD|183410 PRK12292, hisZ, ATP phosphoribosyltransferase regulatory subunit;
Provisional.
Length = 391
Score = 26.8 bits (60), Expect = 2.7
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 9 GLFRFLLRFIPSGF-ERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIE 67
GLFR LL +G E + +V+ L K + ++L L++++ L L ++ G E
Sbjct: 164 GLFRALLE--AAGLSEELEEVLRRALANKDYVALEELVLDLSEELRDALLALPRLRGGRE 221
Query: 68 ELK 70
L+
Sbjct: 222 VLE 224
>gnl|CDD|171504 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewed.
Length = 505
Score = 26.2 bits (57), Expect = 3.6
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 13 FLLRFIPSGFERIVDV----VSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAE 61
+L R + GFER+ ++ +E ++ + + E+ ++L MA D ++L E
Sbjct: 243 YLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTE 295
>gnl|CDD|162728 TIGR02146, LysS_fung_arch, homocitrate synthase. This model
includes the yeast LYS21 gene which carries out the
first step of the alpha-aminoadipate (AAA) lysine
biosynthesis pathway. A related pathway is found in
Thermus thermophilus. This enzyme is closely related to
2-isopropylmalate synthase (LeuA) and citramalate
synthase (CimA), both of which are present in the
euryarchaeota. Some archaea have a separate homocitrate
synthase (AksA) which also synthesizes longer
homocitrate analogs.
Length = 344
Score = 26.3 bits (58), Expect = 4.0
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 19 PSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKA 64
P F R ++ LT K +I+ K KL + + + A+IK+
Sbjct: 299 PEVFGRKRHILIARLTGKHAIKARKEKLGVKLIEEELKRVTAKIKS 344
>gnl|CDD|180189 PRK05667, dnaG, DNA primase; Validated.
Length = 580
Score = 26.0 bits (58), Expect = 4.4
Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 24 RIVDVVSEYLT-KKQSIEY 41
IVDV+ EY+ KK Y
Sbjct: 17 DIVDVIGEYVKLKKAGRNY 35
>gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 25.4 bits (55), Expect = 6.6
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 1 MIQSFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDK 43
+I S + G+F+F+L FI S +DVV+ + K +E+ K
Sbjct: 99 IIFSLVLIGIFQFILSFISS---FCMDVVTTKILKTLKLEFLK 138
>gnl|CDD|172649 PRK14161, PRK14161, heat shock protein GrpE; Provisional.
Length = 178
Score = 25.3 bits (55), Expect = 6.7
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 39 IEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIR 76
+ + E+ + + ++ +KA IEELK DK IR
Sbjct: 11 QTINDIAEEIVETANP---EITALKAEIEELK-DKLIR 44
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.324 0.141 0.425
Gapped
Lambda K H
0.267 0.0693 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,623,530
Number of extensions: 160311
Number of successful extensions: 479
Number of sequences better than 10.0: 1
Number of HSP's gapped: 479
Number of HSP's successfully gapped: 30
Length of query: 157
Length of database: 5,994,473
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,136,185
Effective search space: 293669135
Effective search space used: 293669135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.3 bits)