RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781199|ref|YP_003065612.1| hypothetical protein
CLIBASIA_05530 [Candidatus Liberibacter asiaticus str. psy62]
         (157 letters)



>1zq7_A Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8PZK8,
           structural genomics, PSI, protein structure initiative;
           2.11A {Methanosarcina mazei} (A:)
          Length = 207

 Score = 29.4 bits (66), Expect = 0.23
 Identities = 10/35 (28%), Positives = 12/35 (34%)

Query: 52  DSSTQLDLAEIKAGIEELKIDKPIRLARIEAQKVK 86
           DS   L     KAG+      K   +   E Q  K
Sbjct: 152 DSIDFLSHTCXKAGLSPDAWVKGAEVYCFEGQIFK 186


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl reductase,
          beta-ketoacyl synthase, dehydratase; 4.00A
          {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
          Length = 120

 Score = 26.3 bits (58), Expect = 1.9
 Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 5/29 (17%)

Query: 16 RFIPSGFERIVDVVSEY--LTKKQSIEYD 42
            +    E +V+VV  Y  +T + ++  D
Sbjct: 4  DVMS--IESLVEVVF-YRGMTMQVAVPRD 29


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} (F:1-76)
          Length = 76

 Score = 25.8 bits (56), Expect = 2.7
 Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 3/33 (9%)

Query: 35 KKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIE 67
          +KQ+++  +  L++  +DS+  L    IKA +E
Sbjct: 18 EKQALKKLQASLKLYADDSAPAL---AIKATME 47


>3drf_A Oligopeptide-binding protein OPPA; oligo-peptide binding,
          voluminous binding cavity, venus FLY- trap, peptide
          binding protein; 1.30A {Lactococcus lactis} PDB: 3drg_A
          3drh_A 3dri_A 3drj_A 3drk_A 3fto_A (A:76-104,A:156-199)
          Length = 73

 Score = 25.7 bits (56), Expect = 3.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 62 IKAGIEELKIDKPIRLARIEAQKVKSGVKWVDG 94
          IK G  ++ +DK  + A I  +K  SG+ + DG
Sbjct: 7  IKGGAADVALDKESKTATITLRKTISGITFPDG 39


>2bc4_B HLA class II histocompatibility antigen, DM beta chain; MHC
           class II, immune system; HET: NDG BMA; 2.27A {Homo
           sapiens} PDB: 1hdm_B 1k8i_B* (B:1-84)
          Length = 84

 Score = 25.6 bits (56), Expect = 3.7
 Identities = 8/22 (36%), Positives = 10/22 (45%)

Query: 124 FNSDPLTLLSPFTQEIIACILG 145
           FN D LT   P   ++  C  G
Sbjct: 28  FNKDLLTCWDPEENKMAPCEFG 49


>2zuo_A MVP, major vault protein; repeat domains, protein-protein
          complex, cytoplasm, ribonucleoprotein, structural
          protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a
          2qzv_A (A:761-861)
          Length = 101

 Score = 25.2 bits (55), Expect = 4.1
 Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 6/46 (13%)

Query: 45 KLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLARIEAQKVKSGVK 90
          +++  +     +++L   +A   EL++ K  +LA +EA+K K   +
Sbjct: 1  RVKKVR-----EMELIYARA-QLELEVSKAQQLANVEAKKFKEMTE 40


>2kci_A Putative acyl carrier protein; alpha, ACP, PCP, structural
          genomics, unknown function, PSI- 2, protein structure
          initiative; NMR {Geobacter metallireducens gs-15} PDB:
          2kjs_A* (A:1-63)
          Length = 63

 Score = 24.2 bits (53), Expect = 9.4
 Identities = 6/49 (12%), Positives = 15/49 (30%), Gaps = 6/49 (12%)

Query: 22 FERIVDVVSEYLTKKQSIEYDKLKLEMAKND--SSTQLDLAEIKAGIEE 68
           + +  +  +        +   L  E + ND  +   L    +   +E 
Sbjct: 4  LDALTPIFRQVF----DDDSIVLTRETSANDIDAWDSLSHMNLIVSLEV 48


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.324    0.141    0.425 

Gapped
Lambda     K      H
   0.267   0.0555    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,230,325
Number of extensions: 51187
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 14
Length of query: 157
Length of database: 4,956,049
Length adjustment: 81
Effective length of query: 76
Effective length of database: 2,217,844
Effective search space: 168556144
Effective search space used: 168556144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.8 bits)