RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781199|ref|YP_003065612.1| hypothetical protein
CLIBASIA_05530 [Candidatus Liberibacter asiaticus str. psy62]
(157 letters)
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 41.1 bits (95), Expect = 1e-04
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 7/35 (20%)
Query: 35 KKQSIEYDKLK--LEMAKNDSSTQLDLAEIKAGIE 67
+KQ+++ KL+ L++ +DS+ LA IKA +E
Sbjct: 18 EKQALK--KLQASLKLYADDSAPA--LA-IKATME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 33.4 bits (76), Expect = 0.023
Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 31/104 (29%)
Query: 12 RFLLRFIP--SGFERIVDVVSEYLTK----------KQSIEYDKLKLEMAKNDSSTQLDL 59
+F RF+P S F S L K ++ ++ +++ D+ DL
Sbjct: 415 KFSNRFLPVASPFH------SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL 468
Query: 60 AEIKAGIEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLT 103
+ I E R+ + VKW T T
Sbjct: 469 RVLSGSISE-------RIVDCIIRLP---VKWE---TTTQFKAT 499
Score = 26.8 bits (59), Expect = 2.4
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 21/68 (30%)
Query: 91 WVDGF-TALIRPLTTFFWIIV-----YPLLVWW------SVKEGMFNSDPLTLLS----- 133
W + F ++ + +T F+I V YP S++ P +LS
Sbjct: 289 W-ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN--EGVPSPMLSISNLT 345
Query: 134 -PFTQEII 140
Q+ +
Sbjct: 346 QEQVQDYV 353
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel,
transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Length = 276
Score = 27.9 bits (61), Expect = 0.98
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 46 LEMAKNDSSTQLDLAEIKAGIEELKIDKPI 75
E A +D+ QL E + EL+ + +
Sbjct: 247 PEEALSDAKQQLTPGEFARLMGELRWHRLL 276
>1zy9_A Alpha-galactosidase; TM1192, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP:
b.30.5.11 c.1.8.13
Length = 564
Score = 26.7 bits (58), Expect = 2.7
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Query: 91 WVDGFTALIRPLTTFFWIIVYPLLV--WWSVKEGMFNSDPLTLLSPFTQEIIACILGFWY 148
D ++R T L + + SD L+L+ ++++ L
Sbjct: 435 LNDPDCLILREEKTDLTQKEKELYSYTCGVLDNMIIESDDLSLVRDHGKKVLKETLELLG 494
Query: 149 TDKIVQK 155
VQ
Sbjct: 495 GRPRVQN 501
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase;
1.75A {Corynebacterium glutamicum}
Length = 738
Score = 26.3 bits (58), Expect = 3.6
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 24 RIVDVVSEYLTKKQSIEYDKLKL-EMAKNDSSTQLDLAEIKAGIEELK 70
RI+ E LT+ Q + +L E+AK + + L I A + +LK
Sbjct: 45 RILAQFPERLTEDQKVGNALAELGELAKTPEANIIKLPNISASVPQLK 92
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET:
ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB:
1j1w_A*
Length = 741
Score = 26.3 bits (58), Expect = 3.6
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 24 RIVDVVSEYLTKKQSIEYDKLKL-EMAKNDSSTQLDLAEIKAGIEELK 70
R++ EYLT Q I D +L ++A + + L I A + +LK
Sbjct: 47 RLIATFPEYLTDTQKISDDLAELGKLATTPDANIIKLPNISASVPQLK 94
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3a25_A* 3a26_A*
Length = 278
Score = 25.8 bits (56), Expect = 4.0
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 1 MIQSFLAGGLFRFLLRFIPSGFERIVDVV 29
I+ L+ L L++ +P + RI DV+
Sbjct: 9 RIREILSKELPEELVKLLPKRWVRIGDVL 37
>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme;
structural genomics, NYSGXRC, target 9284B, enolase
family, PSI-2; 2.60A {Bordetella bronchiseptica}
Length = 392
Score = 25.4 bits (55), Expect = 6.4
Identities = 4/32 (12%), Positives = 14/32 (43%)
Query: 48 MAKNDSSTQLDLAEIKAGIEELKIDKPIRLAR 79
M+ + + A ++A + + P++ +
Sbjct: 1 MSLTRDAASITPARVRAHVFRYPVSTPVKTSF 32
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus}
Length = 332
Score = 24.9 bits (54), Expect = 7.6
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 25 IVDVVSEYLTKKQSI------EYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLA 78
+ D +S++L + KLKL ++ K K K
Sbjct: 245 LSDDLSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQ 304
Query: 79 RIEAQKVKSGVKWVDGF 95
+ A+ KSG+K +D F
Sbjct: 305 KALAKVDKSGMKSIDAF 321
>1zq7_A Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8PZK8, structural
genomics, PSI, protein structure initiative; 2.11A
{Methanosarcina mazei} SCOP: d.309.1.1
Length = 207
Score = 24.8 bits (54), Expect = 9.3
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 52 DSSTQLDLAEIKAGIEELKIDKPIRLARIEAQKVK 86
DS L +KAG+ K + E Q K
Sbjct: 152 DSIDFLSHTCMKAGLSPDAWVKGAEVYCFEGQIFK 186
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.324 0.141 0.425
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,412,377
Number of extensions: 62483
Number of successful extensions: 203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 15
Length of query: 157
Length of database: 5,693,230
Length adjustment: 85
Effective length of query: 72
Effective length of database: 3,632,490
Effective search space: 261539280
Effective search space used: 261539280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.5 bits)