RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781199|ref|YP_003065612.1| hypothetical protein CLIBASIA_05530 [Candidatus Liberibacter asiaticus str. psy62] (157 letters) >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 41.1 bits (95), Expect = 1e-04 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 7/35 (20%) Query: 35 KKQSIEYDKLK--LEMAKNDSSTQLDLAEIKAGIE 67 +KQ+++ KL+ L++ +DS+ LA IKA +E Sbjct: 18 EKQALK--KLQASLKLYADDSAPA--LA-IKATME 47 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 33.4 bits (76), Expect = 0.023 Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 31/104 (29%) Query: 12 RFLLRFIP--SGFERIVDVVSEYLTK----------KQSIEYDKLKLEMAKNDSSTQLDL 59 +F RF+P S F S L K ++ ++ +++ D+ DL Sbjct: 415 KFSNRFLPVASPFH------SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL 468 Query: 60 AEIKAGIEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLT 103 + I E R+ + VKW T T Sbjct: 469 RVLSGSISE-------RIVDCIIRLP---VKWE---TTTQFKAT 499 Score = 26.8 bits (59), Expect = 2.4 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 21/68 (30%) Query: 91 WVDGF-TALIRPLTTFFWIIV-----YPLLVWW------SVKEGMFNSDPLTLLS----- 133 W + F ++ + +T F+I V YP S++ P +LS Sbjct: 289 W-ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN--EGVPSPMLSISNLT 345 Query: 134 -PFTQEII 140 Q+ + Sbjct: 346 QEQVQDYV 353 >1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} Length = 276 Score = 27.9 bits (61), Expect = 0.98 Identities = 8/30 (26%), Positives = 14/30 (46%) Query: 46 LEMAKNDSSTQLDLAEIKAGIEELKIDKPI 75 E A +D+ QL E + EL+ + + Sbjct: 247 PEEALSDAKQQLTPGEFARLMGELRWHRLL 276 >1zy9_A Alpha-galactosidase; TM1192, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP: b.30.5.11 c.1.8.13 Length = 564 Score = 26.7 bits (58), Expect = 2.7 Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 2/67 (2%) Query: 91 WVDGFTALIRPLTTFFWIIVYPLLV--WWSVKEGMFNSDPLTLLSPFTQEIIACILGFWY 148 D ++R T L + + SD L+L+ ++++ L Sbjct: 435 LNDPDCLILREEKTDLTQKEKELYSYTCGVLDNMIIESDDLSLVRDHGKKVLKETLELLG 494 Query: 149 TDKIVQK 155 VQ Sbjct: 495 GRPRVQN 501 >2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} Length = 738 Score = 26.3 bits (58), Expect = 3.6 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 24 RIVDVVSEYLTKKQSIEYDKLKL-EMAKNDSSTQLDLAEIKAGIEELK 70 RI+ E LT+ Q + +L E+AK + + L I A + +LK Sbjct: 45 RILAQFPERLTEDQKVGNALAELGELAKTPEANIIKLPNISASVPQLK 92 >1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A* Length = 741 Score = 26.3 bits (58), Expect = 3.6 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 24 RIVDVVSEYLTKKQSIEYDKLKL-EMAKNDSSTQLDLAEIKAGIEELK 70 R++ EYLT Q I D +L ++A + + L I A + +LK Sbjct: 47 RLIATFPEYLTDTQKISDDLAELGKLATTPDANIIKLPNISASVPQLK 94 >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3a25_A* 3a26_A* Length = 278 Score = 25.8 bits (56), Expect = 4.0 Identities = 9/29 (31%), Positives = 16/29 (55%) Query: 1 MIQSFLAGGLFRFLLRFIPSGFERIVDVV 29 I+ L+ L L++ +P + RI DV+ Sbjct: 9 RIREILSKELPEELVKLLPKRWVRIGDVL 37 >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} Length = 392 Score = 25.4 bits (55), Expect = 6.4 Identities = 4/32 (12%), Positives = 14/32 (43%) Query: 48 MAKNDSSTQLDLAEIKAGIEELKIDKPIRLAR 79 M+ + + A ++A + + P++ + Sbjct: 1 MSLTRDAASITPARVRAHVFRYPVSTPVKTSF 32 >3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2, protein complex, autoimmune disease, endonuclease, hydrolase, metal-binding; 2.90A {Mus musculus} Length = 332 Score = 24.9 bits (54), Expect = 7.6 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 6/77 (7%) Query: 25 IVDVVSEYLTKKQSI------EYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLA 78 + D +S++L + KLKL ++ K K K Sbjct: 245 LSDDLSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQ 304 Query: 79 RIEAQKVKSGVKWVDGF 95 + A+ KSG+K +D F Sbjct: 305 KALAKVDKSGMKSIDAF 321 >1zq7_A Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8PZK8, structural genomics, PSI, protein structure initiative; 2.11A {Methanosarcina mazei} SCOP: d.309.1.1 Length = 207 Score = 24.8 bits (54), Expect = 9.3 Identities = 10/35 (28%), Positives = 13/35 (37%) Query: 52 DSSTQLDLAEIKAGIEELKIDKPIRLARIEAQKVK 86 DS L +KAG+ K + E Q K Sbjct: 152 DSIDFLSHTCMKAGLSPDAWVKGAEVYCFEGQIFK 186 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.324 0.141 0.425 Gapped Lambda K H 0.267 0.0603 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,412,377 Number of extensions: 62483 Number of successful extensions: 203 Number of sequences better than 10.0: 1 Number of HSP's gapped: 203 Number of HSP's successfully gapped: 15 Length of query: 157 Length of database: 5,693,230 Length adjustment: 85 Effective length of query: 72 Effective length of database: 3,632,490 Effective search space: 261539280 Effective search space used: 261539280 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 53 (24.5 bits)