BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781199|ref|YP_003065612.1| hypothetical protein
CLIBASIA_05530 [Candidatus Liberibacter asiaticus str. psy62]
         (157 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781199|ref|YP_003065612.1| hypothetical protein CLIBASIA_05530 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 157

 Score =  315 bits (807), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 157/157 (100%), Positives = 157/157 (100%)

Query: 1   MIQSFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLA 60
           MIQSFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLA
Sbjct: 1   MIQSFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLA 60

Query: 61  EIKAGIEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSVK 120
           EIKAGIEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSVK
Sbjct: 61  EIKAGIEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSVK 120

Query: 121 EGMFNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK 157
           EGMFNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK
Sbjct: 121 EGMFNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK 157


>gi|254780988|ref|YP_003065401.1| hypothetical protein CLIBASIA_04445 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 151

 Score =  160 bits (406), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 79/158 (50%), Positives = 114/158 (72%), Gaps = 15/158 (9%)

Query: 4   SFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIK 63
           SFL G + RF ++F+PS F    +++ EY+ K++SIE+D+L+LE+AK  S+TQ+DL  ++
Sbjct: 3   SFLTGSIARFFIKFVPSLF----NLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDLKALE 58

Query: 64  AGIEELKIDKPIRLARIEAQ----KVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSV 119
           +       + P+RLAR++ Q    + +   K +  F ALIRP TT FWII+YPLL+WW V
Sbjct: 59  S-------ETPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWWGV 111

Query: 120 KEGMFNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK 157
           ++G    DPLTLL+PFTQ+IIACILGFW+TD IVQ++K
Sbjct: 112 EKGYLTKDPLTLLAPFTQDIIACILGFWFTDTIVQRRK 149


>gi|254780505|ref|YP_003064918.1| 6-phosphogluconolactonase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 234

 Score = 22.3 bits (46), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 90  KWVDGFTALIRPLTTFFWIIVYPLLVWWS 118
           K + G  AL  P+    W    PL V W+
Sbjct: 205 KAISGDDALEMPIRAILWNAQSPLEVHWT 233


>gi|254780546|ref|YP_003064959.1| hypothetical protein CLIBASIA_02165 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 423

 Score = 21.6 bits (44), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 14/53 (26%), Positives = 23/53 (43%)

Query: 70  KIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSVKEG 122
           K D P  +  I AQ+  S +   +G   L+ P + F      P+   +S+  G
Sbjct: 361 KADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFG 413


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.324    0.141    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,925
Number of Sequences: 1233
Number of extensions: 3791
Number of successful extensions: 22
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 15
length of query: 157
length of database: 328,796
effective HSP length: 67
effective length of query: 90
effective length of database: 246,185
effective search space: 22156650
effective search space used: 22156650
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 35 (18.1 bits)