HHsearch alignment for GI: 254781202 and conserved domain: PHA00368

>PHA00368 internal virion protein D.
Probab=98.01  E-value=0.0019  Score=43.79  Aligned_cols=463  Identities=14%  Similarity=0.109  Sum_probs=212.7

Q ss_pred             CC-CCCCCCCHHH----HH---------HCCHHHHHHHHHHHHH----HHHHCCC-CCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf             68-1454168799----95---------1368989999997520----8751175-688489899999988763233117
Q gi|254781202|r  193 EN-RIPQPMSVDK----LR---------ATKKDDFVRSMLDWLD----LSRYKDI-DGTPLSRSEIASFVGEVFAERVRS  253 (864)
Q Consensus       193 ~~-~~pq~hd~~~----i~---------~a~~~~W~~~i~~~lD----~~~~~~~-~G~~~~~~~~~~~L~~vy~~i~t~  253 (864)
T Consensus       657 kGtYVP~VYdr~aK~l~~~~~Gg~dgLQeaI~~SWltSY~sRpeVKaRvDe~lkE~~g~-~v~evt~e~VekyA~dKAYG  735 (1316)
T PHA00368        657 KGTYVPHVYDRAAKALYIQRFGGPDGLQEAIAKSWLTSYRSRPEVKARVDEYLKELLGI-DVKEVTPEMVEKYAMDKAYG  735 (1316)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHCC
T ss_conf             77547654527999999998078688999999999887302446899999999987363-41667699999986411116


Q ss_pred             CCCCCCCC----------CHHHHHHC-------CCCCEE-EEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             76566875----------21354311-------457617-8840967899999960887768999998887445567799
Q gi|254781202|r  254 TSFKDPSI----------PSSEVGVK-------REFERV-FHFKDSQAHMDYMEHFGVSTNVNTILTSELASLSKDIVIA  315 (864)
Q Consensus       254 g~~~~~~~----------~~~~~~~~-------~~~~R~-LhFKDa~sw~~Y~~~fG~~~~~~~~m~~hi~~msrDIalm  315 (864)
T Consensus       736 IShTd~F~~Ssvieeni~glvGiEnN~FLEARNLFDSDm~V~lpdGqtFSV-NDLR--~~Dm~~impaYDRRVnGDIaIM  812 (1316)
T PHA00368        736 ISHTDQFTRSSVIEENIEGLVGIENNSFLEARNLFDSDMSVTLPDGQTFSV-NDLR--DFDMKKIMPAYDRRVNGDIAIM  812 (1316)
T ss_pred             CCCHHCCCCCHHHHCCCHHHHCCCCCCHHHHHHCCCCCCCEECCCCCCCCC-CHHH--HHHHHHHHHHHCCCCCCCEEEE
T ss_conf             661210341025541321331445540777764125677326789982002-3266--5035541134315447744552


Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHH
Q ss_conf             98579968999999999998611100000122000014889989999999997625787-67538999999899999999
Q gi|254781202|r  316 RELGPNADSFVKQMIVQTIANDQEASAGNKVLKDWLGRNKLEVRQEAMLQMWEVMRYGE-TVENTGWANWMAGLRSAAGA  394 (864)
Q Consensus       316 ~~lGpNP~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~p~n~~~a~~~a~lR~~~~~  394 (864)
T Consensus       813 ggTGktT----~~LkdeI~aL~~~~~~~----------g~~kgeVeALkdtvKILTGRARRn~D~af~t~~Rsl~DlsFf  878 (1316)
T PHA00368        813 GGTGKTT----KELKDEILALDKKAEGD----------GKLKGEVEALKDTVKILTGRARRNPDTAFETALRSLNDLSFF  878 (1316)
T ss_pred             CCCCCCH----HHHHHHHHHHHHHCCCC----------CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             0688567----99999999987422678----------763113899998899871633368501789998776535566


Q ss_pred             HHHHHHHHHHHCCHHHHHHH-----HCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH---HH----HHHHHHHHCCC
Q ss_conf             87522456641253899985-----01245403899999641380549999999667998---99----99999740266
Q gi|254781202|r  395 SMLGQHPIGALLEDGFISRQ-----MLSRVGIDKEAIQRINKMPLKERMELLSDVGLYAE---GV----VAHGRNMMEGS  462 (864)
Q Consensus       395 akLGgA~ISA~tD~~~i~~t-----~~~~~~~~~~~~~~l~~~~~~d~~~~a~~lGl~~E---~~----~~~~~r~~~~~  462 (864)
T Consensus       879 aKNAYMG~qNiTEIaGMlakGnvral~hGvP~lrd~~~r~kpv~~~ElkEL-H~~~FGkEld~lIRP~r~div~Rlre~t  957 (1316)
T PHA00368        879 AKNAYMGAQNITEIAGMLAKGNVRALLHGVPILRDLAFRNKPVSASELKEL-HGMLFGKELDQLIRPSRQDIVQRLRETT  957 (1316)
T ss_pred             HHHHHHCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCCCCCHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf             544330302688998788434188887276278888760787888999999-9877647788760854788999998637


Q ss_pred             C-CCHHHHHHHH---HHHHHHCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHC--CCCH
Q ss_conf             6-4036799998---9998852437888657676999----999999999763002114773201067899861--7898
Q gi|254781202|r  463 D-AFQIGHKLHS---KMHKWSGAEYLDKKRISSHALI----VYNQIGRMTDTYASLKDLKADPRLDPSIKAFFK--QLDD  532 (864)
Q Consensus       463 ~-~~~~~~~~a~---~~~r~SgL~~wT~~~k~a~~~~----~~~~la~l~~~~~~l~~~k~~d~l~~~~~~~l~--GI~e  532 (864)
T Consensus       958 d~~~~~A~vvgt~ky~TqElAARsP~Tk~LngTtNYilDaaRqG~lgDvv~~al~gk-~~r~~~~-----~~Lk~aSis~ 1031 (1316)
T PHA00368        958 DTGPAVANVVGTLKYGTQELAARSPWTKLLNGTTNYILDAARQGVLGDVVSAALTGK-TTRWFKE-----GFLKSASISP 1031 (1316)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCC-----CHHHHCCCCH
T ss_conf             875789988755211136554138288886263488887774005999998875388-7521332-----3022147799


Q ss_pred             HHHHHHHHHCC--CCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999984121--1135666410052332014457754431000223333200011234570245666665542114577
Q gi|254781202|r  533 TDFTVIKRAKA--MSSPDGYLYARTPSTIKNLKDADLRDLARMSDKIAYHRKKLKNSKTLSPEQRQELQQQLADLERKEI  610 (864)
Q Consensus       533 ~dW~i~r~a~~--~~~~~~~~~~~t~~~i~~~~da~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  610 (864)
T Consensus      1032 EQw~gIkqlire~~trg~dG--------kftikDk~A------------fa~--------DPRa-MDLW----------- 1071 (1316)
T PHA00368       1032 EQWEGIKQLIREHVTRGEDG--------KFTIKDKQA------------FAS--------DPRA-MDLW----------- 1071 (1316)
T ss_pred             HHHHHHHHHHHHHCCCCCCC--------CEEECCHHH------------HCC--------CCHH-HHHH-----------
T ss_conf             99864999999844448898--------456457676------------515--------8336-6888-----------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             88656889999999998653011114566543221000245578755678999998776429999999999987422433
Q gi|254781202|r  611 NILKDKVSNKMHALVLDNVQTSVRGAMHTSLFDRQRLGLLTYKRGTRAGEALRMFQQFTTTPTGMFLNILDLSNSAKMPK  690 (864)
Q Consensus       611 ~~~kd~~~~~l~~~il~~~~~aV~~av~tp~~r~r~~~~~g~~~gT~~GE~~r~~~qFKsFp~a~~~~~~~r~~~~~~~~  690 (864)
T Consensus      1072 ---------Rl~DKvADEtmL-----------RPhKvS~QD---skA~Ga~~km~lQFKsF~iKSlN~rfiRs~ye~tKN 1128 (1316)
T PHA00368       1072 ---------RLADKVADETML-----------RPHKVSLQD---SKAFGALVKMVLQFKSFVIKSLNSRFIRSFYEATKN 1128 (1316)
T ss_pred             ---------HHHHHHHHHHHC-----------CCCCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             ---------763133045523-----------744253101---244415789988777667774023889999875026


Q ss_pred             CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCC----------CCHHHH-HHHHHH----HCCHHHHH
Q ss_conf             113456778999999999999-999999999638999----------927999-999985----05306778
Q gi|254781202|r  691 GASMALNHVWIQYSATMALAG-IGVASIKALLRGEDP----------SLPEVI-YDGTLA----NGALLPYM  746 (864)
Q Consensus       691 ~~~~~~~~~~a~~~~~~t~~G-~~~~q~k~~l~Grdp----------~~~~~~-~~a~~~----gGg~gi~g  746 (864)
T Consensus      1129 ~RaiD---~Alt~viS~GlAggyyvaqahvkA~glpe~qrkeyLk~Aldp~MiayAa~SRSShlGaPL~ian 1197 (1316)
T PHA00368       1129 NRAID---AALTIVISMGLAGGYYVAQAHVKAYGLPEEQRKEYLKNALDPTMIAYAALSRSSHLGAPLSIAN 1197 (1316)
T ss_pred             CHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf             43899---9999999831346889999999971598677889998548878889987612123477446999