HHsearch alignment for GI: 254781202 and conserved domain: PHA00368
>PHA00368 internal virion protein D.
Probab=98.01 E-value=0.0019 Score=43.79 Aligned_cols=463 Identities=14% Similarity=0.109 Sum_probs=212.7
Q ss_pred CC-CCCCCCCHHH----HH---------HCCHHHHHHHHHHHHH----HHHHCCC-CCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 68-1454168799----95---------1368989999997520----8751175-688489899999988763233117
Q gi|254781202|r 193 EN-RIPQPMSVDK----LR---------ATKKDDFVRSMLDWLD----LSRYKDI-DGTPLSRSEIASFVGEVFAERVRS 253 (864)
Q Consensus 193 ~~-~~pq~hd~~~----i~---------~a~~~~W~~~i~~~lD----~~~~~~~-~G~~~~~~~~~~~L~~vy~~i~t~ 253 (864)
T Consensus 657 kGtYVP~VYdr~aK~l~~~~~Gg~dgLQeaI~~SWltSY~sRpeVKaRvDe~lkE~~g~-~v~evt~e~VekyA~dKAYG 735 (1316)
T PHA00368 657 KGTYVPHVYDRAAKALYIQRFGGPDGLQEAIAKSWLTSYRSRPEVKARVDEYLKELLGI-DVKEVTPEMVEKYAMDKAYG 735 (1316)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHCC
T ss_conf 77547654527999999998078688999999999887302446899999999987363-41667699999986411116
Q ss_pred CCCCCCCC----------CHHHHHHC-------CCCCEE-EEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 76566875----------21354311-------457617-8840967899999960887768999998887445567799
Q gi|254781202|r 254 TSFKDPSI----------PSSEVGVK-------REFERV-FHFKDSQAHMDYMEHFGVSTNVNTILTSELASLSKDIVIA 315 (864)
Q Consensus 254 g~~~~~~~----------~~~~~~~~-------~~~~R~-LhFKDa~sw~~Y~~~fG~~~~~~~~m~~hi~~msrDIalm 315 (864)
T Consensus 736 IShTd~F~~Ssvieeni~glvGiEnN~FLEARNLFDSDm~V~lpdGqtFSV-NDLR--~~Dm~~impaYDRRVnGDIaIM 812 (1316)
T PHA00368 736 ISHTDQFTRSSVIEENIEGLVGIENNSFLEARNLFDSDMSVTLPDGQTFSV-NDLR--DFDMKKIMPAYDRRVNGDIAIM 812 (1316)
T ss_pred CCCHHCCCCCHHHHCCCHHHHCCCCCCHHHHHHCCCCCCCEECCCCCCCCC-CHHH--HHHHHHHHHHHCCCCCCCEEEE
T ss_conf 661210341025541321331445540777764125677326789982002-3266--5035541134315447744552
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHH
Q ss_conf 98579968999999999998611100000122000014889989999999997625787-67538999999899999999
Q gi|254781202|r 316 RELGPNADSFVKQMIVQTIANDQEASAGNKVLKDWLGRNKLEVRQEAMLQMWEVMRYGE-TVENTGWANWMAGLRSAAGA 394 (864)
Q Consensus 316 ~~lGpNP~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~p~n~~~a~~~a~lR~~~~~ 394 (864)
T Consensus 813 ggTGktT----~~LkdeI~aL~~~~~~~----------g~~kgeVeALkdtvKILTGRARRn~D~af~t~~Rsl~DlsFf 878 (1316)
T PHA00368 813 GGTGKTT----KELKDEILALDKKAEGD----------GKLKGEVEALKDTVKILTGRARRNPDTAFETALRSLNDLSFF 878 (1316)
T ss_pred CCCCCCH----HHHHHHHHHHHHHCCCC----------CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 0688567----99999999987422678----------763113899998899871633368501789998776535566
Q ss_pred HHHHHHHHHHHCCHHHHHHH-----HCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH---HH----HHHHHHHHCCC
Q ss_conf 87522456641253899985-----01245403899999641380549999999667998---99----99999740266
Q gi|254781202|r 395 SMLGQHPIGALLEDGFISRQ-----MLSRVGIDKEAIQRINKMPLKERMELLSDVGLYAE---GV----VAHGRNMMEGS 462 (864)
Q Consensus 395 akLGgA~ISA~tD~~~i~~t-----~~~~~~~~~~~~~~l~~~~~~d~~~~a~~lGl~~E---~~----~~~~~r~~~~~ 462 (864)
T Consensus 879 aKNAYMG~qNiTEIaGMlakGnvral~hGvP~lrd~~~r~kpv~~~ElkEL-H~~~FGkEld~lIRP~r~div~Rlre~t 957 (1316)
T PHA00368 879 AKNAYMGAQNITEIAGMLAKGNVRALLHGVPILRDLAFRNKPVSASELKEL-HGMLFGKELDQLIRPSRQDIVQRLRETT 957 (1316)
T ss_pred HHHHHHCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCCCCCHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf 544330302688998788434188887276278888760787888999999-9877647788760854788999998637
Q ss_pred C-CCHHHHHHHH---HHHHHHCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHC--CCCH
Q ss_conf 6-4036799998---9998852437888657676999----999999999763002114773201067899861--7898
Q gi|254781202|r 463 D-AFQIGHKLHS---KMHKWSGAEYLDKKRISSHALI----VYNQIGRMTDTYASLKDLKADPRLDPSIKAFFK--QLDD 532 (864)
Q Consensus 463 ~-~~~~~~~~a~---~~~r~SgL~~wT~~~k~a~~~~----~~~~la~l~~~~~~l~~~k~~d~l~~~~~~~l~--GI~e 532 (864)
T Consensus 958 d~~~~~A~vvgt~ky~TqElAARsP~Tk~LngTtNYilDaaRqG~lgDvv~~al~gk-~~r~~~~-----~~Lk~aSis~ 1031 (1316)
T PHA00368 958 DTGPAVANVVGTLKYGTQELAARSPWTKLLNGTTNYILDAARQGVLGDVVSAALTGK-TTRWFKE-----GFLKSASISP 1031 (1316)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCC-----CHHHHCCCCH
T ss_conf 875789988755211136554138288886263488887774005999998875388-7521332-----3022147799
Q ss_pred HHHHHHHHHCC--CCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999984121--1135666410052332014457754431000223333200011234570245666665542114577
Q gi|254781202|r 533 TDFTVIKRAKA--MSSPDGYLYARTPSTIKNLKDADLRDLARMSDKIAYHRKKLKNSKTLSPEQRQELQQQLADLERKEI 610 (864)
Q Consensus 533 ~dW~i~r~a~~--~~~~~~~~~~~t~~~i~~~~da~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 610 (864)
T Consensus 1032 EQw~gIkqlire~~trg~dG--------kftikDk~A------------fa~--------DPRa-MDLW----------- 1071 (1316)
T PHA00368 1032 EQWEGIKQLIREHVTRGEDG--------KFTIKDKQA------------FAS--------DPRA-MDLW----------- 1071 (1316)
T ss_pred HHHHHHHHHHHHHCCCCCCC--------CEEECCHHH------------HCC--------CCHH-HHHH-----------
T ss_conf 99864999999844448898--------456457676------------515--------8336-6888-----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 88656889999999998653011114566543221000245578755678999998776429999999999987422433
Q gi|254781202|r 611 NILKDKVSNKMHALVLDNVQTSVRGAMHTSLFDRQRLGLLTYKRGTRAGEALRMFQQFTTTPTGMFLNILDLSNSAKMPK 690 (864)
Q Consensus 611 ~~~kd~~~~~l~~~il~~~~~aV~~av~tp~~r~r~~~~~g~~~gT~~GE~~r~~~qFKsFp~a~~~~~~~r~~~~~~~~ 690 (864)
T Consensus 1072 ---------Rl~DKvADEtmL-----------RPhKvS~QD---skA~Ga~~km~lQFKsF~iKSlN~rfiRs~ye~tKN 1128 (1316)
T PHA00368 1072 ---------RLADKVADETML-----------RPHKVSLQD---SKAFGALVKMVLQFKSFVIKSLNSRFIRSFYEATKN 1128 (1316)
T ss_pred ---------HHHHHHHHHHHC-----------CCCCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf ---------763133045523-----------744253101---244415789988777667774023889999875026
Q ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCC----------CCHHHH-HHHHHH----HCCHHHHH
Q ss_conf 113456778999999999999-999999999638999----------927999-999985----05306778
Q gi|254781202|r 691 GASMALNHVWIQYSATMALAG-IGVASIKALLRGEDP----------SLPEVI-YDGTLA----NGALLPYM 746 (864)
Q Consensus 691 ~~~~~~~~~~a~~~~~~t~~G-~~~~q~k~~l~Grdp----------~~~~~~-~~a~~~----gGg~gi~g 746 (864)
T Consensus 1129 ~RaiD---~Alt~viS~GlAggyyvaqahvkA~glpe~qrkeyLk~Aldp~MiayAa~SRSShlGaPL~ian 1197 (1316)
T PHA00368 1129 NRAID---AALTIVISMGLAGGYYVAQAHVKAYGLPEEQRKEYLKNALDPTMIAYAALSRSSHLGAPLSIAN 1197 (1316)
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 43899---9999999831346889999999971598677889998548878889987612123477446999