HHsearch alignment for GI: 254781202 and conserved domain: PHA01972

>PHA01972 structural protein.
Probab=100.00  E-value=0  Score=1566.01  Aligned_cols=788  Identities=22%  Similarity=0.288  Sum_probs=715.8

Q ss_pred             CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH------HHCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf             915899999987457877899999999999999998------661999799999999999-9999999999999999999
Q gi|254781202|r    1 MKPECIQVLNKAAGRELSKKELRRLEDGIVRAYVSL------DGKGLSKAERYRLAGLKA-EEDFQKELIRSVNDAIDEA   73 (864)
Q Consensus         1 mk~~Ci~~V~~algr~lsa~E~~~i~d~i~~~~r~~------~~~~ls~ae~~~~AA~~a-~~~~~~e~~~~~~~~~~~~   73 (864)
T Consensus         1 M~~~C~~aV~~AaGR~Lsa~E~~~iedri~~~mr~~ar~d~~~w~~ls~aer~~~~a~e~a~~~~~~e~~~~r~r~~~~i   80 (828)
T PHA01972          1 MPQKCVEAVAQAAGRQLTADEIKGIEDRIKEAMRSVARKDPKGWKEESIAKRFYKTDADLARQELVHDAIKKKKRVALAI   80 (828)
T ss_pred             CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             93789999999866877789997799999999999985295233337999999988999988999999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Q ss_conf             999999998541356641078999987632100--2376699999999999999999998520001456-----------
Q gi|254781202|r   74 YKRHQLRSDLDRVQAGVYGKSQALFNKLFFKAG--SAEVPLEMKIKAAETKVLSKFNEYAEVGSKNLGF-----------  140 (864)
Q Consensus        74 ~~~~~l~~~l~~~~~~~~~~~~al~~~~~~~~~--~~~~sV~~~~~a~~~~~~~~l~~~~~~~~~~~~~-----------  140 (864)
T Consensus        81 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (828)
T PHA01972         81 AKQAEATKKINEVLTADKDPAAALLGMLSRDPNEEAKFLSVEQRINATRDVSKAKISDFMAALDPTTRQIFAGIATGERR  160 (828)
T ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHH
T ss_conf             99999999987431478555789866550275431002108888878999998899999985111344331043303443


Q ss_pred             --HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCC-CCCCCCHHHHHHCCHHHHHHHH
Q ss_conf             --5418889999999848888998999999999999999999998617984002681-4541687999513689899999
Q gi|254781202|r  141 --TLDKQFGLDVFDEMKGKKTQNEQASRLVKQYFETQRELHSQAHEAGLDYKFFENR-IPQPMSVDKLRATKKDDFVRSM  217 (864)
Q Consensus       141 --~~dka~~~~~~~e~~g~~tgn~~a~~~A~~~~~~~e~~r~~~N~aG~~Igkl~~~-~pq~hd~~~i~~a~~~~W~~~i  217 (864)
T Consensus       161 f~~~~~~~~~dli~E~~g~~Tgn~~Ak~~A~~~~~~~e~~R~rfN~aGg~Ig~ldd~~~pq~Hd~~ki~~ag~~~W~~~i  240 (828)
T PHA01972        161 FDKAQQRLLDDIVHELYGRQTGNADAKKAAKGWKKVTEDLRARFNDAGGDIGELDDWRLPQKHNRMKISKAGADAWVDDV  240 (828)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHH
T ss_conf             21445899999999983788899999999999999999999999873798543558899976789999733689999999


Q ss_pred             HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC---CHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCC
Q ss_conf             97520875117568848989999998876323311776566875---213543114576178840967899999960887
Q gi|254781202|r  218 LDWLDLSRYKDIDGTPLSRSEIASFVGEVFAERVRSTSFKDPSI---PSSEVGVKREFERVFHFKDSQAHMDYMEHFGVS  294 (864)
Q Consensus       218 ~~~lD~~~~~~~~G~~~~~~~~~~~L~~vy~~i~t~g~~~~~~~---~~~~~~~~~~~~R~LhFKDa~sw~~Y~~~fG~~  294 (864)
T Consensus       241 ~~~LD~~~~v~~~G~~~~~~el~~~L~~VY~ti~T~G~nk~~~~~~~G~~~~anr~s~~RvLhFKDa~sw~~Yq~~fG-~  319 (828)
T PHA01972        241 WDLLDRSKYVKKDGKPMNDAELREALYSVYNTIATDGMNKIDPGSKTGSGARANRGSAERVIHFKDADSHLQYQREFG-D  319 (828)
T ss_pred             HHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHC-C
T ss_conf             865079986266789799899999999998520248877678521122355521022310256457688999999867-9


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHH-CCC
Q ss_conf             7689999988874455677999857996899999999999861110000012200001488998999999999762-578
Q gi|254781202|r  295 TNVNTILTSELASLSKDIVIARELGPNADSFVKQMIVQTIANDQEASAGNKVLKDWLGRNKLEVRQEAMLQMWEVM-RYG  373 (864)
Q Consensus       295 ~~~~~~m~~hi~~msrDIalm~~lGpNP~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~  373 (864)
T Consensus       320 ~~~~~~m~~hl~~msrdialme~lGpNP~~~f~~l~d~~~~~~~~~~------------~~~~g~~~~~~~m~~~v~G~~  387 (828)
T PHA01972        320 TSVYASMVGHLDGMSRDIGLVETFGPDPDRNFNTLLDAVKTKKGTTS------------RQPTGAMKMVEPTFNMLMGYN  387 (828)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC------------CCHHHHHHHHHHHHHHHHCCC
T ss_conf             98899999989877678999998399857899999999986404345------------225779999999999971878


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-CCCCCCHHHHHHHHHHCCC--HHHHHHHHHHHHHHHH
Q ss_conf             767538999999899999999875224566412538999850-1245403899999641380--5499999996679989
Q gi|254781202|r  374 ETVENTGWANWMAGLRSAAGASMLGQHPIGALLEDGFISRQM-LSRVGIDKEAIQRINKMPL--KERMELLSDVGLYAEG  450 (864)
Q Consensus       374 ~~p~n~~~a~~~a~lR~~~~~akLGgA~ISA~tD~~~i~~t~-~~~~~~~~~~~~~l~~~~~--~d~~~~a~~lGl~~E~  450 (864)
T Consensus       388 ~~~~n~~~An~~aglR~~~taskLG~A~lSa~tD~~~~~~~a~y~gl~~~~~~~~~l~~l~~~ske~~~~a~~~GL~aE~  467 (828)
T PHA01972        388 MVEENPVWGRRVAGLRNLWTASKLGAAVLSALSDSGTMSMAASYNAMPPARLLRNMLSEMMPGSKSEASRAQDFGLGAES  467 (828)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             77655999999987999999998621255440359999999986388889999999998575767899999970147888


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHC--
Q ss_conf             999999740266640367999989998852437888657676999999999999763002114773201067899861--
Q gi|254781202|r  451 VVAHGRNMMEGSDAFQIGHKLHSKMHKWSGAEYLDKKRISSHALIVYNQIGRMTDTYASLKDLKADPRLDPSIKAFFK--  528 (864)
Q Consensus       451 ~~~~~~r~~~~~~~~~~~~~~a~~~~r~SgL~~wT~~~k~a~~~~~~~~la~l~~~~~~l~~~k~~d~l~~~~~~~l~--  528 (864)
T Consensus       468 ~~~~~~R~~~d~~~~~~~~~~a~~~mR~SGLs~wT~a~k~af~~~m~~~lg~~--------a~~~~~dL~~~drrvL~~~  539 (828)
T PHA01972        468 LLDRVNRWGTDNLGGHRSRNLAEAVMKVSGLTAWTDAARAAFQFEMMTALGEA--------ADSDWSDLPESDRRILGRK  539 (828)
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH--------CCCCHHHCCHHHHHHHHHC
T ss_conf             98999986066643078899999999984408988989999999999999876--------1488444798999999877


Q ss_pred             CCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             78988999998412111356664100523320144577544310002233332000112345702456666655421145
Q gi|254781202|r  529 QLDDTDFTVIKRAKAMSSPDGYLYARTPSTIKNLKDADLRDLARMSDKIAYHRKKLKNSKTLSPEQRQELQQQLADLERK  608 (864)
Q Consensus       529 GI~e~dW~i~r~a~~~~~~~~~~~~~t~~~i~~~~da~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  608 (864)
T Consensus       540 GIte~DW~i~~~~~~~~~~g~~--~ltPd~i~~ip~~~------------------------------------------  575 (828)
T PHA01972        540 GITESDWAIIAAAPRTNYGGAK--MLTPDAIYAVPRNM------------------------------------------  575 (828)
T ss_pred             CCCHHHHHHHHCCCCCCCCCCC--CCCHHHHHHCCHHH------------------------------------------
T ss_conf             9986779999708860689987--56889887546889------------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             77886568899999999986530111145665432210002455787556789999987764299999999999874224
Q gi|254781202|r  609 EINILKDKVSNKMHALVLDNVQTSVRGAMHTSLFDRQRLGLLTYKRGTRAGEALRMFQQFTTTPTGMFLNILDLSNSAKM  688 (864)
Q Consensus       609 ~~~~~kd~~~~~l~~~il~~~~~aV~~av~tp~~r~r~~~~~g~~~gT~~GE~~r~~~qFKsFp~a~~~~~~~r~~~~~~  688 (864)
T Consensus       576 -----~~ela~KL~g~i~de~~~AV----~tp~~r~rai~~~g~q~GT~~GE~~Rs~~qFKSFpia~~~~~~~R~~~~~G  646 (828)
T PHA01972        576 -----DAEAQTKLLGMVDGETMMAV----PTPDARTRAIMAGGTKSGTFGGELHRSFFLFKSFPIATIMRHWRRAFTGKG  646 (828)
T ss_pred             -----HHHHHHHHHHHHHCCCCEEC----CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
T ss_conf             -----99999999999851121101----588536789882788898488999999999841489999999999986068


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHC
Q ss_conf             3311345677899999999999999999999963899992---7999999985053067788760577863035777740
Q gi|254781202|r  689 PKGASMALNHVWIQYSATMALAGIGVASIKALLRGEDPSL---PEVIYDGTLANGALLPYMDRLTKLVSKGDRAAIGGLL  765 (864)
Q Consensus       689 ~~~~~~~~~~~~a~~~~~~t~~G~~~~q~k~~l~Grdp~~---~~~~~~a~~~gGg~gi~gd~l~~~~~r~g~~~~~~~~  765 (864)
T Consensus       647 ~~~~~~-~~~y~a~l~~~tTl~G~~s~q~K~ll~GrdPr~~~~~~fw~~a~lqGGGlGi~GDfL~~~~~r~G~~~~~~~a  725 (828)
T PHA01972        647 YPGAFD-RMAYAAIMVASTTLLGAGSIQAKDLLNGKDPRSMTDPKFWIEALLKGGSFGYYGDFLRNAHTGYGSDMTSYIG  725 (828)
T ss_pred             CCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHC
T ss_conf             886046-7889999999999999999999999779999999862499999973687125799987653143510788862


Q ss_pred             CHHHHHHHHHHHHHHH----HHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             4015558899999986----402676542258999997318774489999999999999999870812479999999874
Q gi|254781202|r  766 GPVPSMVTNLTSSAVE----LATKDNENSKVNATKAIRKTLPFMNMWYLKNSFDHLILNQILEELNPGYLDRQQSKKKKK  841 (864)
Q Consensus       766 GP~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~P~~nLwy~k~a~d~li~~~~~e~~~Pgy~~r~~~r~~~~  841 (864)
T Consensus       726 GP~~s~~~~l~~l~~~~~~~a~~G~~~~~g~d~~~~~k~~tP~~NLWy~k~a~d~Li~dqlqe~~~PGy~~R~~~R~~k~  805 (828)
T PHA01972        726 GPVLSYGDQLTKWVAMNPQDAAQGKAESAGADLLKFATQQTPFANLWYTKAATDRLIMDQLQELSSPGYDKKQLNRSRRE  805 (828)
T ss_pred             CCCHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             86056799999986213888856995034899999998569606699999999999999999883986589999999998


Q ss_pred             -CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             -7443458643587679998778
Q gi|254781202|r  842 -GIELFQNMDEGLPHRLPFPFGE  863 (864)
Q Consensus       842 -~~~~~w~p~~~~p~r~p~~~~~  863 (864)
T Consensus       806 ~~q~ywW~Pg~~~P~r~p~~~~~  828 (828)
T PHA01972        806 FNQTYWWSPGIGTPQRIPSLFEA  828 (828)
T ss_pred             HCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             18813207999886668886769