HHsearch alignment for GI: 254781202 and conserved domain: PHA01972
>PHA01972 structural protein.
Probab=100.00 E-value=0 Score=1566.01 Aligned_cols=788 Identities=22% Similarity=0.288 Sum_probs=715.8
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH------HHCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf 915899999987457877899999999999999998------661999799999999999-9999999999999999999
Q gi|254781202|r 1 MKPECIQVLNKAAGRELSKKELRRLEDGIVRAYVSL------DGKGLSKAERYRLAGLKA-EEDFQKELIRSVNDAIDEA 73 (864)
Q Consensus 1 mk~~Ci~~V~~algr~lsa~E~~~i~d~i~~~~r~~------~~~~ls~ae~~~~AA~~a-~~~~~~e~~~~~~~~~~~~ 73 (864)
T Consensus 1 M~~~C~~aV~~AaGR~Lsa~E~~~iedri~~~mr~~ar~d~~~w~~ls~aer~~~~a~e~a~~~~~~e~~~~r~r~~~~i 80 (828)
T PHA01972 1 MPQKCVEAVAQAAGRQLTADEIKGIEDRIKEAMRSVARKDPKGWKEESIAKRFYKTDADLARQELVHDAIKKKKRVALAI 80 (828)
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 93789999999866877789997799999999999985295233337999999988999988999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Q ss_conf 999999998541356641078999987632100--2376699999999999999999998520001456-----------
Q gi|254781202|r 74 YKRHQLRSDLDRVQAGVYGKSQALFNKLFFKAG--SAEVPLEMKIKAAETKVLSKFNEYAEVGSKNLGF----------- 140 (864)
Q Consensus 74 ~~~~~l~~~l~~~~~~~~~~~~al~~~~~~~~~--~~~~sV~~~~~a~~~~~~~~l~~~~~~~~~~~~~----------- 140 (864)
T Consensus 81 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (828)
T PHA01972 81 AKQAEATKKINEVLTADKDPAAALLGMLSRDPNEEAKFLSVEQRINATRDVSKAKISDFMAALDPTTRQIFAGIATGERR 160 (828)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHH
T ss_conf 99999999987431478555789866550275431002108888878999998899999985111344331043303443
Q ss_pred --HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCC-CCCCCCHHHHHHCCHHHHHHHH
Q ss_conf --5418889999999848888998999999999999999999998617984002681-4541687999513689899999
Q gi|254781202|r 141 --TLDKQFGLDVFDEMKGKKTQNEQASRLVKQYFETQRELHSQAHEAGLDYKFFENR-IPQPMSVDKLRATKKDDFVRSM 217 (864)
Q Consensus 141 --~~dka~~~~~~~e~~g~~tgn~~a~~~A~~~~~~~e~~r~~~N~aG~~Igkl~~~-~pq~hd~~~i~~a~~~~W~~~i 217 (864)
T Consensus 161 f~~~~~~~~~dli~E~~g~~Tgn~~Ak~~A~~~~~~~e~~R~rfN~aGg~Ig~ldd~~~pq~Hd~~ki~~ag~~~W~~~i 240 (828)
T PHA01972 161 FDKAQQRLLDDIVHELYGRQTGNADAKKAAKGWKKVTEDLRARFNDAGGDIGELDDWRLPQKHNRMKISKAGADAWVDDV 240 (828)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHH
T ss_conf 21445899999999983788899999999999999999999999873798543558899976789999733689999999
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC---CHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCC
Q ss_conf 97520875117568848989999998876323311776566875---213543114576178840967899999960887
Q gi|254781202|r 218 LDWLDLSRYKDIDGTPLSRSEIASFVGEVFAERVRSTSFKDPSI---PSSEVGVKREFERVFHFKDSQAHMDYMEHFGVS 294 (864)
Q Consensus 218 ~~~lD~~~~~~~~G~~~~~~~~~~~L~~vy~~i~t~g~~~~~~~---~~~~~~~~~~~~R~LhFKDa~sw~~Y~~~fG~~ 294 (864)
T Consensus 241 ~~~LD~~~~v~~~G~~~~~~el~~~L~~VY~ti~T~G~nk~~~~~~~G~~~~anr~s~~RvLhFKDa~sw~~Yq~~fG-~ 319 (828)
T PHA01972 241 WDLLDRSKYVKKDGKPMNDAELREALYSVYNTIATDGMNKIDPGSKTGSGARANRGSAERVIHFKDADSHLQYQREFG-D 319 (828)
T ss_pred HHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHC-C
T ss_conf 865079986266789799899999999998520248877678521122355521022310256457688999999867-9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHH-CCC
Q ss_conf 7689999988874455677999857996899999999999861110000012200001488998999999999762-578
Q gi|254781202|r 295 TNVNTILTSELASLSKDIVIARELGPNADSFVKQMIVQTIANDQEASAGNKVLKDWLGRNKLEVRQEAMLQMWEVM-RYG 373 (864)
Q Consensus 295 ~~~~~~m~~hi~~msrDIalm~~lGpNP~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~ 373 (864)
T Consensus 320 ~~~~~~m~~hl~~msrdialme~lGpNP~~~f~~l~d~~~~~~~~~~------------~~~~g~~~~~~~m~~~v~G~~ 387 (828)
T PHA01972 320 TSVYASMVGHLDGMSRDIGLVETFGPDPDRNFNTLLDAVKTKKGTTS------------RQPTGAMKMVEPTFNMLMGYN 387 (828)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC------------CCHHHHHHHHHHHHHHHHCCC
T ss_conf 98899999989877678999998399857899999999986404345------------225779999999999971878
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-CCCCCCHHHHHHHHHHCCC--HHHHHHHHHHHHHHHH
Q ss_conf 767538999999899999999875224566412538999850-1245403899999641380--5499999996679989
Q gi|254781202|r 374 ETVENTGWANWMAGLRSAAGASMLGQHPIGALLEDGFISRQM-LSRVGIDKEAIQRINKMPL--KERMELLSDVGLYAEG 450 (864)
Q Consensus 374 ~~p~n~~~a~~~a~lR~~~~~akLGgA~ISA~tD~~~i~~t~-~~~~~~~~~~~~~l~~~~~--~d~~~~a~~lGl~~E~ 450 (864)
T Consensus 388 ~~~~n~~~An~~aglR~~~taskLG~A~lSa~tD~~~~~~~a~y~gl~~~~~~~~~l~~l~~~ske~~~~a~~~GL~aE~ 467 (828)
T PHA01972 388 MVEENPVWGRRVAGLRNLWTASKLGAAVLSALSDSGTMSMAASYNAMPPARLLRNMLSEMMPGSKSEASRAQDFGLGAES 467 (828)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 77655999999987999999998621255440359999999986388889999999998575767899999970147888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHC--
Q ss_conf 999999740266640367999989998852437888657676999999999999763002114773201067899861--
Q gi|254781202|r 451 VVAHGRNMMEGSDAFQIGHKLHSKMHKWSGAEYLDKKRISSHALIVYNQIGRMTDTYASLKDLKADPRLDPSIKAFFK-- 528 (864)
Q Consensus 451 ~~~~~~r~~~~~~~~~~~~~~a~~~~r~SgL~~wT~~~k~a~~~~~~~~la~l~~~~~~l~~~k~~d~l~~~~~~~l~-- 528 (864)
T Consensus 468 ~~~~~~R~~~d~~~~~~~~~~a~~~mR~SGLs~wT~a~k~af~~~m~~~lg~~--------a~~~~~dL~~~drrvL~~~ 539 (828)
T PHA01972 468 LLDRVNRWGTDNLGGHRSRNLAEAVMKVSGLTAWTDAARAAFQFEMMTALGEA--------ADSDWSDLPESDRRILGRK 539 (828)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH--------CCCCHHHCCHHHHHHHHHC
T ss_conf 98999986066643078899999999984408988989999999999999876--------1488444798999999877
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 78988999998412111356664100523320144577544310002233332000112345702456666655421145
Q gi|254781202|r 529 QLDDTDFTVIKRAKAMSSPDGYLYARTPSTIKNLKDADLRDLARMSDKIAYHRKKLKNSKTLSPEQRQELQQQLADLERK 608 (864)
Q Consensus 529 GI~e~dW~i~r~a~~~~~~~~~~~~~t~~~i~~~~da~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 608 (864)
T Consensus 540 GIte~DW~i~~~~~~~~~~g~~--~ltPd~i~~ip~~~------------------------------------------ 575 (828)
T PHA01972 540 GITESDWAIIAAAPRTNYGGAK--MLTPDAIYAVPRNM------------------------------------------ 575 (828)
T ss_pred CCCHHHHHHHHCCCCCCCCCCC--CCCHHHHHHCCHHH------------------------------------------
T ss_conf 9986779999708860689987--56889887546889------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 77886568899999999986530111145665432210002455787556789999987764299999999999874224
Q gi|254781202|r 609 EINILKDKVSNKMHALVLDNVQTSVRGAMHTSLFDRQRLGLLTYKRGTRAGEALRMFQQFTTTPTGMFLNILDLSNSAKM 688 (864)
Q Consensus 609 ~~~~~kd~~~~~l~~~il~~~~~aV~~av~tp~~r~r~~~~~g~~~gT~~GE~~r~~~qFKsFp~a~~~~~~~r~~~~~~ 688 (864)
T Consensus 576 -----~~ela~KL~g~i~de~~~AV----~tp~~r~rai~~~g~q~GT~~GE~~Rs~~qFKSFpia~~~~~~~R~~~~~G 646 (828)
T PHA01972 576 -----DAEAQTKLLGMVDGETMMAV----PTPDARTRAIMAGGTKSGTFGGELHRSFFLFKSFPIATIMRHWRRAFTGKG 646 (828)
T ss_pred -----HHHHHHHHHHHHHCCCCEEC----CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
T ss_conf -----99999999999851121101----588536789882788898488999999999841489999999999986068
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHC
Q ss_conf 3311345677899999999999999999999963899992---7999999985053067788760577863035777740
Q gi|254781202|r 689 PKGASMALNHVWIQYSATMALAGIGVASIKALLRGEDPSL---PEVIYDGTLANGALLPYMDRLTKLVSKGDRAAIGGLL 765 (864)
Q Consensus 689 ~~~~~~~~~~~~a~~~~~~t~~G~~~~q~k~~l~Grdp~~---~~~~~~a~~~gGg~gi~gd~l~~~~~r~g~~~~~~~~ 765 (864)
T Consensus 647 ~~~~~~-~~~y~a~l~~~tTl~G~~s~q~K~ll~GrdPr~~~~~~fw~~a~lqGGGlGi~GDfL~~~~~r~G~~~~~~~a 725 (828)
T PHA01972 647 YPGAFD-RMAYAAIMVASTTLLGAGSIQAKDLLNGKDPRSMTDPKFWIEALLKGGSFGYYGDFLRNAHTGYGSDMTSYIG 725 (828)
T ss_pred CCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHC
T ss_conf 886046-7889999999999999999999999779999999862499999973687125799987653143510788862
Q ss_pred CHHHHHHHHHHHHHHH----HHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 4015558899999986----402676542258999997318774489999999999999999870812479999999874
Q gi|254781202|r 766 GPVPSMVTNLTSSAVE----LATKDNENSKVNATKAIRKTLPFMNMWYLKNSFDHLILNQILEELNPGYLDRQQSKKKKK 841 (864)
Q Consensus 766 GP~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~P~~nLwy~k~a~d~li~~~~~e~~~Pgy~~r~~~r~~~~ 841 (864)
T Consensus 726 GP~~s~~~~l~~l~~~~~~~a~~G~~~~~g~d~~~~~k~~tP~~NLWy~k~a~d~Li~dqlqe~~~PGy~~R~~~R~~k~ 805 (828)
T PHA01972 726 GPVLSYGDQLTKWVAMNPQDAAQGKAESAGADLLKFATQQTPFANLWYTKAATDRLIMDQLQELSSPGYDKKQLNRSRRE 805 (828)
T ss_pred CCCHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 86056799999986213888856995034899999998569606699999999999999999883986589999999998
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -7443458643587679998778
Q gi|254781202|r 842 -GIELFQNMDEGLPHRLPFPFGE 863 (864)
Q Consensus 842 -~~~~~w~p~~~~p~r~p~~~~~ 863 (864)
T Consensus 806 ~~q~ywW~Pg~~~P~r~p~~~~~ 828 (828)
T PHA01972 806 FNQTYWWSPGIGTPQRIPSLFEA 828 (828)
T ss_pred HCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 18813207999886668886769