Query gi|254781202|ref|YP_003065615.1| hypothetical protein CLIBASIA_05545 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 864 No_of_seqs 122 out of 124 Neff 6.3 Searched_HMMs 23785 Date Wed Jun 1 02:02:15 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781202.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3ohe_A Histidine triad (HIT) p 33.3 14 0.00058 12.8 1.7 50 160-209 51-100 (137) 2 3i4s_A Histidine triad protein 32.0 2.5 0.00011 18.4 -2.5 86 160-253 56-141 (149) 3 3nrd_A Histidine triad (HIT) p 25.2 3.5 0.00015 17.3 -2.8 80 161-248 54-133 (135) 4 3e3u_A Peptide deformylase; me 24.7 19 0.00079 11.8 1.3 11 852-862 186-196 (197) 5 2dat_A Possible global transcr 23.4 20 0.00084 11.6 5.3 38 196-233 56-100 (123) 6 2hyv_A Annexin A2; calcium-bin 20.3 23 0.00096 11.2 5.7 93 204-307 127-219 (308) 7 2blf_B SORB, sulfite\:cytochro 20.1 23 0.00097 11.1 4.9 42 199-246 32-77 (81) 8 3i24_A HIT family hydrolase; s 18.0 25 0.0011 10.8 2.6 39 162-200 53-91 (149) 9 2oik_A Histidine triad (HIT) p 15.6 29 0.0012 10.4 2.4 39 162-200 60-98 (154) 10 3imk_A Putative molybdenum car 15.4 14 0.00059 12.8 -1.4 34 820-853 53-86 (158) No 1 >3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 1.20A {Marinobacter aquaeolei} Probab=33.33 E-value=14 Score=12.84 Aligned_cols=50 Identities=18% Similarity=0.125 Sum_probs=33.1 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHCC Q ss_conf 99899999999999999999999861798400268145416879995136 Q gi|254781202|r 160 QNEQASRLVKQYFETQRELHSQAHEAGLDYKFFENRIPQPMSVDKLRATK 209 (864) Q Consensus 160 gn~~a~~~A~~~~~~~e~~r~~~N~aG~~Igkl~~~~pq~hd~~~i~~a~ 209 (864) .+..+.++-..+..+.+.++..++..|.++..+.+.+|+.|=+.-=|..+ T Consensus 51 ~~ee~~~l~~~~~~v~~al~~~~~~~~~N~~~~g~~v~HlH~HiIPR~~~ 100 (137) T 3ohe_A 51 PNEQQQRLLFESSALSEGMMELFGGDKMNVAALGNMVPQLHLHHIVRYQG 100 (137) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECCSSCCSCCEEEEEECTT T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCEEEEEEEEEECCCCC T ss_conf 99999999999999999975243975205887588020899999605479 No 2 >3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum} Probab=32.01 E-value=2.5 Score=18.43 Aligned_cols=86 Identities=15% Similarity=0.153 Sum_probs=55.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH Q ss_conf 99899999999999999999999861798400268145416879995136898999999752087511756884898999 Q gi|254781202|r 160 QNEQASRLVKQYFETQRELHSQAHEAGLDYKFFENRIPQPMSVDKLRATKKDDFVRSMLDWLDLSRYKDIDGTPLSRSEI 239 (864) Q Consensus 160 gn~~a~~~A~~~~~~~e~~r~~~N~aG~~Igkl~~~~pq~hd~~~i~~a~~~~W~~~i~~~lD~~~~~~~~G~~~~~~~~ 239 (864) ....+.++...+..+...+++.|+..|.+|+-.-+-+|+.|=..-=|..+...|...++ -.....+.++.++ T Consensus 56 ~~ee~~~l~~~v~~v~~al~~~~~~~~vNi~~~Gq~VpHlHiHIIPR~~~D~~~p~pvw--------~~~~~~~~d~~e~ 127 (149) T 3i4s_A 56 DEVQQAQLMTEISRVSRALKEITKCDKLNIAALGNLVPQLHVHIIARRTGDAAWPRPVW--------GVMQPLAHDATEV 127 (149) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECCSSCCSCCEEEEEECTTSTTTTSCCT--------TTSCCCCCCHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCC--------CCCCCCCCCHHHH T ss_conf 99999999999999999999872952553997689733257988524468988987702--------6788877999999 Q ss_pred HHHHHHHHHHHHCC Q ss_conf 99988763233117 Q gi|254781202|r 240 ASFVGEVFAERVRS 253 (864) Q Consensus 240 ~~~L~~vy~~i~t~ 253 (864) .++...+-+.|..+ T Consensus 128 ~~~~~~ir~~L~lg 141 (149) T 3i4s_A 128 QNFISALRRKIWLG 141 (149) T ss_dssp HHHHHHHHHHHCC- T ss_pred HHHHHHHHHHHCCC T ss_conf 99999999987788 No 3 >3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti} Probab=25.16 E-value=3.5 Score=17.34 Aligned_cols=80 Identities=10% Similarity=0.042 Sum_probs=49.1 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH Q ss_conf 98999999999999999999998617984002681454168799951368989999997520875117568848989999 Q gi|254781202|r 161 NEQASRLVKQYFETQRELHSQAHEAGLDYKFFENRIPQPMSVDKLRATKKDDFVRSMLDWLDLSRYKDIDGTPLSRSEIA 240 (864) Q Consensus 161 n~~a~~~A~~~~~~~e~~r~~~N~aG~~Igkl~~~~pq~hd~~~i~~a~~~~W~~~i~~~lD~~~~~~~~G~~~~~~~~~ 240 (864) ...+.++-+.+..+++.++..++..|.+|.-.-+-+|+.|=+.-=|..+...|...+++ .....+.++.+++ T Consensus 54 ~ee~~~l~~~~~~v~~al~~~~~~~~iN~~~~gq~vpHlH~HiIPR~~~D~~~p~~vw~--------~~~~~~~~~~e~~ 125 (135) T 3nrd_A 54 PLDQAMLTFETNLVAAGLKKATGAEKINIGALGNIVRQLHVHVIARREGDPNWPGPVWG--------FGKAEPWPEEEHR 125 (135) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECCSSCCSCCEEEEEECTTSTTTTSCSTT--------CSCCCCCCHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEEEEEECCCCCCCCCCCCCCC--------CCCCCCCCHHHHH T ss_conf 99999999999999999999839760329886897775799995674799888876127--------7888779999999 Q ss_pred HHHHHHHH Q ss_conf 99887632 Q gi|254781202|r 241 SFVGEVFA 248 (864) Q Consensus 241 ~~L~~vy~ 248 (864) ++...+-+ T Consensus 126 ~l~~kI~~ 133 (135) T 3nrd_A 126 TFAARIME 133 (135) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99999996 No 4 >3e3u_A Peptide deformylase; metallo-enzyme, hydrolase, iron, metal-binding, protein biosynthesis; HET: NVC; 1.56A {Mycobacterium tuberculosis} Probab=24.72 E-value=19 Score=11.79 Aligned_cols=11 Identities=55% Similarity=0.815 Sum_probs=6.0 Q ss_pred CCCCCCCCCCC Q ss_conf 58767999877 Q gi|254781202|r 852 GLPHRLPFPFG 862 (864) Q Consensus 852 ~~p~r~p~~~~ 862 (864) .+|...|-||| T Consensus 186 ~~p~~~~~~~~ 196 (197) T 3e3u_A 186 WLPGEDPDPFG 196 (197) T ss_dssp ECBTTBCCTTC T ss_pred CCCCCCCCCCC T ss_conf 69897989899 No 5 >2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=23.43 E-value=20 Score=11.61 Aligned_cols=38 Identities=13% Similarity=0.336 Sum_probs=18.0 Q ss_pred CCCCCCHHHHHH-------CCHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 454168799951-------36898999999752087511756884 Q gi|254781202|r 196 IPQPMSVDKLRA-------TKKDDFVRSMLDWLDLSRYKDIDGTP 233 (864) Q Consensus 196 ~pq~hd~~~i~~-------a~~~~W~~~i~~~lD~~~~~~~~G~~ 233 (864) |.+..|...|++ ...++|.+++.=.+...+..++.|.. T Consensus 56 Ik~PmdL~~I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~ 100 (123) T 2dat_A 56 IRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQ 100 (123) T ss_dssp CSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHHHHHHHSCTTSH T ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCH T ss_conf 289777999999886601598999999999999999998789999 No 6 >2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein, helix bundle, heparin, hexasaccharide, metal binding protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB: 2hyu_A* 2hyw_A 1w7b_A 1xjl_A Probab=20.33 E-value=23 Score=11.17 Aligned_cols=93 Identities=14% Similarity=0.075 Sum_probs=48.6 Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCEEEEECCHHH Q ss_conf 99513689899999975208751175688489899999988763233117765668752135431145761788409678 Q gi|254781202|r 204 KLRATKKDDFVRSMLDWLDLSRYKDIDGTPLSRSEIASFVGEVFAERVRSTSFKDPSIPSSEVGVKREFERVFHFKDSQA 283 (864) Q Consensus 204 ~i~~a~~~~W~~~i~~~lD~~~~~~~~G~~~~~~~~~~~L~~vy~~i~t~g~~~~~~~~~~~~~~~~~~~R~LhFKDa~s 283 (864) .|..-.-..|.+.++.+|--.+. |++.+.+...+.+-....|+... ..+.++...+..-+.++...|....|+ T Consensus 127 di~~e~sG~~~~ll~~ll~~~R~--e~~~~vd~~~a~~da~~L~~a~~-~~~gtde~~~i~Il~~rs~~ql~~i~~---- 199 (308) T 2hyv_A 127 DIISDTSGDFRKLMVALAKGRRA--EDGSVIDYELIDQDARDLYDAGV-KRKGTDVPKWISIMTERSVPHLQKVFD---- 199 (308) T ss_dssp HHHHTCCHHHHHHHHHHHTCCCC--CCCSSCCHHHHHHHHHHHHHTTT-TSSSCCHHHHHHHHHHSCHHHHHHHHH---- T ss_pred HHHHCCCHHHHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHCCCHHHHHHHHH---- T ss_conf 98853678899999998706878--78887899999989999998764-435887457502450499999999999---- Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHH Q ss_conf 999999608877689999988874 Q gi|254781202|r 284 HMDYMEHFGVSTNVNTILTSELAS 307 (864) Q Consensus 284 w~~Y~~~fG~~~~~~~~m~~hi~~ 307 (864) +|.+.|| .++..++.+.+.+ T Consensus 200 --~Y~~~~g--~~l~~~i~~e~sG 219 (308) T 2hyv_A 200 --RYKSYSP--YDMLESIRKEVKG 219 (308) T ss_dssp --HHTTTCS--SCHHHHHHHHCCH T ss_pred --HHHHHCC--CCHHHHHHHHCCC T ss_conf --9998629--9889999876365 No 7 >2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B* Probab=20.05 E-value=23 Score=11.13 Aligned_cols=42 Identities=10% Similarity=0.161 Sum_probs=29.3 Q ss_pred CCCHHHHHH----CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH Q ss_conf 168799951----368989999997520875117568848989999998876 Q gi|254781202|r 199 PMSVDKLRA----TKKDDFVRSMLDWLDLSRYKDIDGTPLSRSEIASFVGEV 246 (864) Q Consensus 199 ~hd~~~i~~----a~~~~W~~~i~~~lD~~~~~~~~G~~~~~~~~~~~L~~v 246 (864) -|+...|.. -+.+.|...| .+|++.-|.+.++.+.+..+... T Consensus 32 CHs~~~v~~~~~~~t~~~W~~~V------~~M~~~~ga~i~~~e~~~I~~YL 77 (81) T 2blf_B 32 CHSVDYINTQPPGKGQAFWDAEV------QKMIKVYHAPVDEADAKAIADYL 77 (81) T ss_dssp SSCTHHHHTSCTTCCHHHHHHHH------HHHHHTSCCCCCHHHHHHHHHHH T ss_pred CCCCHHHCCCCCCCCHHHHHHHH------HHHHHHCCCCCCHHHHHHHHHHH T ss_conf 07966653065789989999999------99997549998888899999999 No 8 >3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114} Probab=17.98 E-value=25 Score=10.80 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCC Q ss_conf 899999999999999999999861798400268145416 Q gi|254781202|r 162 EQASRLVKQYFETQRELHSQAHEAGLDYKFFENRIPQPM 200 (864) Q Consensus 162 ~~a~~~A~~~~~~~e~~r~~~N~aG~~Igkl~~~~pq~h 200 (864) ....++...+..+...++..++..|.+|.-.-+.+|+.| T Consensus 53 ee~~~l~~~~~~v~~al~~~~~~~~~N~~~~gq~v~HlH 91 (149) T 3i24_A 53 EQQIQFIKESSAVAQLLEDNFSPDKINIGALGNLVPQLH 91 (149) T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSEEEEEECCSSCCSCC T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHCCEEEEEE T ss_conf 999999999999999999881976573888599833799 No 9 >2oik_A Histidine triad (HIT) protein; YP_546612.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus KT} SCOP: d.13.1.1 Probab=15.58 E-value=29 Score=10.39 Aligned_cols=39 Identities=10% Similarity=0.186 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCC Q ss_conf 899999999999999999999861798400268145416 Q gi|254781202|r 162 EQASRLVKQYFETQRELHSQAHEAGLDYKFFENRIPQPM 200 (864) Q Consensus 162 ~~a~~~A~~~~~~~e~~r~~~N~aG~~Igkl~~~~pq~h 200 (864) .....+...+.++...++..++..+.+++..-+-+|+.| T Consensus 60 ~e~~~l~~~~~~~~~~l~~~~~~~~~n~~~~g~~vpHlH 98 (154) T 2oik_A 60 AERDHLMLVVFAVEEAVREVMRPDKINLASLGNMTPHVH 98 (154) T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSEEEEEECCSSSCSCE T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEE T ss_conf 899999999999988889870645533998778778899 No 10 >3imk_A Putative molybdenum carrier protein; YP_461806.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE MES PG4 PG6; 1.45A {Syntrophus aciditrophicus SB} Probab=15.38 E-value=14 Score=12.76 Aligned_cols=34 Identities=15% Similarity=0.024 Sum_probs=0.0 Q ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 9999870812479999999874744345864358 Q gi|254781202|r 820 NQILEELNPGYLDRQQSKKKKKGIELFQNMDEGL 853 (864) Q Consensus 820 ~~~~e~~~Pgy~~r~~~r~~~~~~~~~w~p~~~~ 853 (864) |+|+|+-+++|..|.++-++.-+-+-...+|+.. T Consensus 53 Y~L~E~~~~~y~~RT~~NV~DsD~TLI~~~g~l~ 86 (158) T 3imk_A 53 YQLQEMPTSDYSKRTEKNVLDSDGTLIISHGILK 86 (158) T ss_dssp SCCEECSSCCHHHHHHHHHHTSSEEEEEESSSCC T ss_pred CCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCC T ss_conf 6644158776657777442336705998559888 Done!