RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781202|ref|YP_003065615.1| hypothetical protein
CLIBASIA_05545 [Candidatus Liberibacter asiaticus str. psy62]
(864 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 78.8 bits (194), Expect = 4e-15
Identities = 106/694 (15%), Positives = 184/694 (26%), Gaps = 306/694 (44%)
Query: 78 QLRSDLDRVQAGVYGKSQALFNKLFFKAGSAEV--PLEMKIKAAETKVLSKFNEYAEVGS 135
QL+ ++ + ++ A E P E+ + KF
Sbjct: 32 QLQ---EQFNKILPEPTEGF-------AADDEPTTPAEL---------VGKF-------- 64
Query: 136 KNLGFTLDKQFGLDVFDEMKGKKTQNEQASRLVKQYFETQ----RELHSQAHEAGLDYKF 191
LG+ V G Q +Q L FE ++H+
Sbjct: 65 --LGYVSSL-----VEPSKVG---QFDQVLNLCLTEFENCYLEGNDIHA----------- 103
Query: 192 FENRIPQPMSVDKLRATKKDDFVRSMLDWLDLSRYKDIDGTPLSRSEIASFVGEVFAERV 251
+L + D T + E+ + R+
Sbjct: 104 ---------------------LAAKLLQ--------ENDTTLVKTKEL---IKNYITARI 131
Query: 252 RSTSFKDPSIPSSEVGVKREFERVFHFKDSQAHMDYMEHFGVSTNVNTILTSELASLSKD 311
+ +S + F V + A + + FG N + EL
Sbjct: 132 MAKR-PFDKKSNSAL-----FRAV---GEGNAQL--VAIFGGQGNTDDYFE-EL------ 173
Query: 312 IVIAREL----GPNADSFVKQM--IVQTIA-NDQEA----SAGNKVLKDWLGRNKLEVRQ 360
R+L +K + + +A + G +L+ WL
Sbjct: 174 ----RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE-WL--ENPSNTP 226
Query: 361 E--------------AMLQMWEVMRY-----------GETVEN----TG----------- 380
+ ++Q+ Y GE TG
Sbjct: 227 DKDYLLSIPISCPLIGVIQL---AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI 283
Query: 381 -----WAN-------------WMAGLRS--AAGASMLGQHPIGALLED------GFISRQ 414
W + ++ G+R A + L ++LED G S
Sbjct: 284 AETDSWESFFVSVRKAITVLFFI-GVRCYEAYPNTSLPP----SILEDSLENNEGVPS-P 337
Query: 415 MLSRVGIDKEAIQRI----NK-MPLKERMELLSDVGLYAEGVVAHGRNMMEGSDAFQIGH 469
MLS + +E +Q N +P +++E + L N G+ +
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVE----ISL---------VN---GAKNLVV-- 379
Query: 470 KLHSKMHKWSG-AEYLDKKRISSHALIVYNQIGRMTDTYASLKDLKADPRLDPSIKAFFK 528
SG + L + L + L+ KA LD S + F
Sbjct: 380 ---------SGPPQSL-------YGLNLT------------LRKAKAPSGLDQS-RIPFS 410
Query: 529 Q--LD-DTDFTVIKRAKAMSSP--DGYLYARTPSTIKNLKDADLR----DLARMSDKIA- 578
+ L F + +SP L + K+L ++ D+ +I
Sbjct: 411 ERKLKFSNRFLPV------ASPFHSHLLVPASDLINKDLVKNNVSFNAKDI-----QIPV 459
Query: 579 YHRKKLKNSKTLSPEQRQELQQQLADLERKEINILKDKVSNKMHALVLDNV---QTSVRG 635
Y + S DL +I + V ++ V T+
Sbjct: 460 YD------TFDGS------------DLRVLSGSISERIVD----CIIRLPVKWETTTQFK 497
Query: 636 AMHTSLFDR---QRLGLLTYK----RGTR---AG 659
A H F LG+LT++ G R AG
Sbjct: 498 ATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAG 531
Score = 56.5 bits (136), Expect = 3e-08
Identities = 85/525 (16%), Positives = 149/525 (28%), Gaps = 209/525 (39%)
Query: 439 ELLSDVGLYAE--GVVAH-------G--------------RNMMEGSDAFQIGHKLHSKM 475
E + L + G V+ G +EG+D I H L +K+
Sbjct: 53 EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND---I-HALAAKL 108
Query: 476 HKWSGAEYLDKKRISSHALIVYNQIGRMTDTYASLKDLKADPRLDPSIKAFFKQLDDTDF 535
+ + + K + + Y M + + S A F+ + +
Sbjct: 109 LQENDTTLVKTKEL----IKNYITARIMAK--------RPFDKKSNS--ALFRAVGE--- 151
Query: 536 TVIKRAKAMS------SPDGY------LYARTPSTIKNLKD---ADLRDLARMSDKIAYH 580
A+ ++ + D Y LY + +L L +L R +
Sbjct: 152 ---GNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 581 RKK-------LKNSKTLSPEQRQELQQQLADLERKEINILKDKVSNKMHALV-LDNVQTS 632
+ L+N P + +L +S + ++ L
Sbjct: 209 FTQGLNILEWLEN-----PSNTPDKDY-----------LLSIPISCPLIGVIQL--AHYV 250
Query: 633 VRGAMHTSLFDRQRLGLLTYKRGTRAGEALRMFQQFTTTPTGMFLNILDLSNSAKMPKG- 691
V LG T GE LR TG +S +G
Sbjct: 251 V--TAKL-------LGF------T-PGE-LR--SYLKGA-TG---------HS----QGL 277
Query: 692 ---ASMALNHVWIQY--SATMALA---GIGVASIKALLRGEDP--SLPEVIYDGTLANGA 741
++A W + S A+ IGV +A P SLP I + +L N
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY-----PNTSLPPSILEDSLENNE 332
Query: 742 LLP-YM--------DRLTKLVSK-----------------GDRAAIGGLLGPVPSMVT-N 774
+P M +++ V+K G + + + GP S+ N
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV--VSGPPQSLYGLN 390
Query: 775 LTSSAVELATKDNENSKVNATKAIRK----------TLPFMNMWYLKNSFDHLILNQILE 824
LT + A + S++ ++ RK PF + L + D I +
Sbjct: 391 LTLRKAK-APSGLDQSRIPFSE--RKLKFSNRFLPVASPFHSH-LLVPASD-----LINK 441
Query: 825 ELNPGYLDRQQSKKKKKGIELFQNMDEGLPHRLPFP-F----GED 864
+L K + + P + G D
Sbjct: 442 DL------------VKNNVSF-------NAKDIQIPVYDTFDGSD 467
Score = 38.4 bits (89), Expect = 0.007
Identities = 69/425 (16%), Positives = 125/425 (29%), Gaps = 175/425 (41%)
Query: 562 LKDADLRDLARMSDKIAYHRKKLKNSKTLSPE-----------QRQELQQQ--------- 601
L++ + L ++ A + + +P E +
Sbjct: 33 LQEQFNKILPEPTEGFAA------DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNL 86
Query: 602 -LADLERKEINILKDKVSNKMHALVLDNVQTSVRGAMHTSLFDRQRLGLLTYKRGTRAGE 660
L + E L+ N +HAL + T+L + L + Y A
Sbjct: 87 CLTEFEN---CYLEG---NDIHALA-----AKLLQENDTTLVKTKEL-IKNY---ITARI 131
Query: 661 ALRMFQQFTTTPTGMFLNILDLSNSAKMPKGASMAL------NHVWIQ-----YSATMAL 709
+ + F + +A++ +A+ + + Y L
Sbjct: 132 MAK--RPFDKKSNSALFRAVG-EGNAQL-----VAIFGGQGNTDDYFEELRDLYQTYHVL 183
Query: 710 AGIGVASIKALL---------------RG-------EDP-SLPEVIYDGTLANGAL-LP- 744
G + L +G E+P + P+ Y L + + P
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY---LLSIPISCPL 240
Query: 745 --------YMDRLT-KL--VSKGD-RAAIGGLLGPVPSMVTNLTSSAVELATKDNENS-K 791
Y+ +T KL + G+ R+ + G G +VT AV +A D+ S
Sbjct: 241 IGVIQLAHYV--VTAKLLGFTPGELRSYLKGATGHSQGLVT-----AVAIAETDSWESFF 293
Query: 792 VNATKAIRKTLPFM----NMWY---------LKNSFDH--------L-I-------LNQI 822
V+ KAI L F+ Y L++S ++ L I +
Sbjct: 294 VSVRKAIT-VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY 352
Query: 823 LEELNPGYL--DRQ------------------QS--------KKKKKGIELFQNMDEGLP 854
+ + N +L +Q QS +K K L Q+
Sbjct: 353 VNKTN-SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS------ 405
Query: 855 HRLPF 859
R+PF
Sbjct: 406 -RIPF 409
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.9 bits (79), Expect = 0.068
Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 580 HRKKLKN----SKTLSPEQRQELQQQLADL-ERKEINILKDKVSNKM 621
RK+L+ SK + E R++ ++ L + +R+ + K+K++N++
Sbjct: 94 QRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI 140
>1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A,
alpha/beta hydrolase family; 1.85A {Bacillus subtilis}
SCOP: c.69.1.2
Length = 361
Score = 32.3 bits (72), Expect = 0.47
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 501 GRMTDTYASLKDLKADPRLDPSIKAFFKQLD 531
GR+ D + + DPR P++
Sbjct: 5 GRLGDESSGPRT---DPRFSPAMVEALATFG 32
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, alternative splicing, amyloid,
amyloidosis, blood coagulation, coiled coil; HET: NAG
NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 31.2 bits (69), Expect = 0.93
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 558 TIKNLKDADLRDLARMSDKIAYHRK----KLKNSKTLSPEQRQELQQQLADLERKEINIL 613
I LK+ L + + + L+ + + + + DL + I +L
Sbjct: 65 RINKLKN-SLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSR-IEVL 122
Query: 614 KDKVSNK 620
K KV K
Sbjct: 123 KRKVIEK 129
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_D*
Length = 1407
Score = 31.2 bits (70), Expect = 1.0
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 549 GYLYARTPSTIKNLKDADLRDLARMSDKIAYHRKKLKNSKTLSPEQRQELQQQLADLERK 608
+L PS I L D LRD+ +++ Y + ++ +RQ++ L + +
Sbjct: 115 WFL-KSLPSRIGLLLDMPLRDI----ERVLYFESYVVIEGGMTNLERQQI---LTEEQYL 166
Query: 609 E-INILKDKVSNKMHA 623
+ + D+ KM A
Sbjct: 167 DALEEFGDEFDAKMGA 182
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 1.1
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 7/24 (29%)
Query: 509 SLKDLKADPRL--D---P--SIKA 525
+LK L+A +L D P +IKA
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKA 44
Score = 29.2 bits (64), Expect = 3.7
Identities = 6/23 (26%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 832 DRQQSKKKKKGIELFQNMDEGLP 854
++Q KK + ++L+ D+ P
Sbjct: 18 EKQALKKLQASLKLYA--DDSAP 38
Score = 29.2 bits (64), Expect = 4.4
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 21/45 (46%)
Query: 422 DKEAIQRINKMPLKERMELLSDVGLYAE------GVVAHGRNMME 460
+K+A++++ + LK LYA+ + A ME
Sbjct: 18 EKQALKKL-QASLK----------LYADDSAPALAIKA----TME 47
Score = 28.4 bits (62), Expect = 7.5
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 15/36 (41%)
Query: 198 QPMSVDKLRATKKDDFVRSMLDWLDLSRYKDIDGTP 233
+ ++ KL+A+ L L Y D D P
Sbjct: 18 EKQALKKLQAS------------LKL--YAD-DSAP 38
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics,
PSI-2, protein structure initiative; 2.00A {Listeria
monocytogenes}
Length = 464
Score = 30.0 bits (66), Expect = 2.5
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 561 NLKDADLRDLARMSDKIAYHRKKLKNSKTLSPEQRQELQQQLADL--ERKE 609
+L+D DLR + + + I K K +S +Q + + +AD +E
Sbjct: 2 SLEDKDLRSIQEVRNLIESANKAQKELAAMSQQQIDTIVKAIADAGYGARE 52
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer; HET: FYA; 2.50A {Thermus thermophilus} SCOP:
d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A*
3hfz_A* 2aly_A* 2akw_A* 2amc_A*
Length = 350
Score = 30.0 bits (67), Expect = 2.5
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 20/97 (20%)
Query: 559 IKNLKD-ADLRDLARMSDKIAYHRKK------LKNSKTLSPEQRQELQQQLADLERKEIN 611
I+N +D +L+ L K Y KK +K L E+R++ +E+N
Sbjct: 9 IQNARDLEELKAL-----KARYLGKKGLLTQEMKGLSALPLEERRKR--------GQELN 55
Query: 612 ILKDKVSNKMHALVLDNVQTSVRGAMHTSLFDRQRLG 648
+K + + A + +++ A+ D G
Sbjct: 56 AIKAALEAALEAREKALEEAALKEALERERVDVSLPG 92
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine
BEAT-lyase, aluminium resistance protein, Q81A77_baccr,
NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Length = 431
Score = 28.8 bits (64), Expect = 4.6
Identities = 24/184 (13%), Positives = 55/184 (29%), Gaps = 17/184 (9%)
Query: 595 RQELQQQLADLERKEINILKDKVSNKMHALVLDNVQTSVRGAMHTSLFDRQRLGLLTYKR 654
R L++ AD+ E +++ ++ + HA+ + L+ + +
Sbjct: 67 RDTLEKVYADVFGAEAGLVRPQIISGTHAIST--ALFGILRPGDELLYITGKPYDTLEEI 124
Query: 655 GTRAGEALRMFQQFTTTPTGMFLNILDLSNSAKMPKGASMALNHVWIQ----YSATMALA 710
G+ + F+++ + L L + + + IQ Y+ +
Sbjct: 125 VGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFT 184
Query: 711 GIGVASIKALLRGEDPSLPEVIYDGTLANGALLPY---------MDRLTKLVSKGDRAAI 761
+ + A ++ P + V D L K G
Sbjct: 185 ISQIKEMIAFVKEIKPDVV-VFVDNCYGEFIEEQEPCHVGADLMAGSLIKN-PGGGIVKT 242
Query: 762 GGLL 765
GG +
Sbjct: 243 GGYI 246
>2hw2_A Rifampin ADP-ribosyl transferase; protein-antibiotic complex,
ADP-ribosylation; HET: RFP; 1.45A {Mycobacterium
smegmatis}
Length = 143
Score = 28.6 bits (64), Expect = 5.3
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 590 LSPEQRQELQQQLADLERKEINILKD 615
PEQ ++Q L +L RK + ++ D
Sbjct: 118 HPPEQLAAMRQGLEELRRKGLAVIYD 143
>1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP:
c.69.1.2 PDB: 1lzk_A
Length = 323
Score = 28.8 bits (63), Expect = 5.5
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 513 LKADPRLDPSIKAFFKQLDDTDFTVIKRAKAM 544
+ P LDP + A L DF + A+A
Sbjct: 1 MTTFPTLDPELAAALTMLPKVDFADLPNARAT 32
>2kpt_A Putative secreted protein; methods development, alpha/beta,
structural genomics, PSI-2, protein structure
initiative; NMR {Corynebacterium glutamicum}
Length = 148
Score = 28.7 bits (64), Expect = 6.2
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 589 TLSPEQRQELQQQLADLERKE 609
+S +Q + D++ E
Sbjct: 23 QISSSDITNIQAAIDDVKASE 43
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis/exocytosis complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A
Length = 1630
Score = 28.5 bits (64), Expect = 6.4
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 12/60 (20%)
Query: 52 LKAEEDFQKELIRSV------NDAIDEAYKRHQLRSDL----DRVQAGVYGKSQALFNKL 101
+ ED K LI V ++ + E KR++L+ L R+ G + A N L
Sbjct: 822 VDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEGC--EEPATHNAL 879
>2kw7_A Conserved domain protein; structural genomics, northeast structural
genomics consortiu PSI-2, protein structure initiative;
NMR {Porphyromonas gingivalis}
Length = 157
Score = 28.5 bits (63), Expect = 7.5
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 589 TLSPEQRQELQQQLADLERK 608
LS Q + + +L +
Sbjct: 27 LLSNAQEEVMNGRLRAIRSS 46
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium,
GTPase activation, SGC, alternative splicing, cytoplasm,
phosphoprotein; 2.30A {Homo sapiens}
Length = 228
Score = 28.1 bits (62), Expect = 9.4
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 767 PVPSMVTNLTSSAVELATKDNENSKVNATKAIRKTLPFMNMWYLKNSFDHL 817
P P M L+ + +++ ++ ++ A KA LP N L+ L
Sbjct: 103 PEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAIMLLPDENREVLQTLLYFL 153
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.317 0.132 0.372
Gapped
Lambda K H
0.267 0.0450 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 7,151,344
Number of extensions: 338497
Number of successful extensions: 1357
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1346
Number of HSP's successfully gapped: 40
Length of query: 864
Length of database: 5,693,230
Length adjustment: 101
Effective length of query: 763
Effective length of database: 3,244,586
Effective search space: 2475619118
Effective search space used: 2475619118
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.0 bits)