RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781203|ref|YP_003065616.1| hypothetical protein
CLIBASIA_05550 [Candidatus Liberibacter asiaticus str. psy62]
(478 letters)
>gnl|CDD|148701 pfam07246, Phlebovirus_NSM, Phlebovirus nonstructural protein NS-M.
This family consists of several Phlebovirus
nonstructural NS-M proteins which represent the
N-terminal region of the M polyprotein precursor. The
function of this family is unknown.
Length = 264
Score = 30.6 bits (68), Expect = 0.91
Identities = 44/229 (19%), Positives = 73/229 (31%), Gaps = 43/229 (18%)
Query: 189 PFGMVERGWSSKVLEDHGYPDMAQHYRIFDMESLITDGLIGAFFGGMHSKQVQNMS-LRL 247
++ER W + + P H R F K + + + +
Sbjct: 38 GPEIIERYWGFESAKHDYMPGFDLHCR----------------FNEGDFKYMTHENAISQ 81
Query: 248 VNDLKEGITERLPYKHGVKSSSPGLHTSFDA-------YEAHTDTLAHGVDSLVRGEYPH 300
+ ++ E L + G ++ S GL + D + DT + + P
Sbjct: 82 IKEVTTSPDE-LKFSCGDETKSLGLSITNDGLNNMMGPAIIYCDTNDFIRNITTGEQSPR 140
Query: 301 FDQEKLQTIADNTLEDPHFKPHLPEPEPLPQYKEHSDRQKPSEPLAEHPHPKRKEVEREL 360
D EKL+ A+ K E + Q H +QK +E R +++R
Sbjct: 141 VDYEKLKKNAEEKDATIQRKTKEMEEDSRNQIAHHEIQQKKNE-----IQKLRNDLKRG- 194
Query: 361 SEIEGAKK---ESSAR---------KFFDEGSPDHSPFKGERNQKLDPM 397
E AK ES AR + DE S + R + D
Sbjct: 195 QEHRDAKLRVEESMARVKGLKEELKQLTDELQHAKSEMQSLRKKIKDFE 243
>gnl|CDD|131973 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component,
dihydrolipoamide succinyltransferase. This model
represents an Actinobacterial clade of E2 enzyme, a
component of the 2-oxoglutarate dehydrogenase complex
involved in the TCA cycle. These proteins have multiple
domains including the catalytic domain (pfam00198), one
or two biotin domains (pfam00364) and an E3-component
binding domain (pfam02817).
Length = 590
Score = 29.7 bits (66), Expect = 1.5
Identities = 14/80 (17%), Positives = 27/80 (33%)
Query: 324 PEPEPLPQYKEHSDRQKPSEPLAEHPHPKRKEVERELSEIEGAKKESSARKFFDEGSPDH 383
+ + + + + E + + E E + E E A+K+ + D
Sbjct: 216 AAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPEAEKAEKKEEKAAAAPAANSDG 275
Query: 384 SPFKGERNQKLDPMRGADFT 403
SP+ +KL G D
Sbjct: 276 SPYVTPLVRKLAAEHGIDLN 295
>gnl|CDD|171536 PRK12488, PRK12488, acetate permease; Provisional.
Length = 549
Score = 29.0 bits (65), Expect = 2.5
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 69 TDPHSVGTGAHLVEGLTSLAPYIAGAALAGKLLSFIP-----TPLTRLAGLALQSAPLAA 123
T+P G ++ G +A ++A A L FI T L +AGLAL A +
Sbjct: 324 TEPSYRDAGGKIIGGGNMVAVHLAQAVGGNLFLGFISAVAFATILAVVAGLALSGASAVS 383
Query: 124 GALYAYLSHKAESSIHHQI 142
LYA + K ++S ++
Sbjct: 384 HDLYACVIRKGQASEAQEM 402
>gnl|CDD|181264 PRK08168, PRK08168, NADH dehydrogenase subunit L; Provisional.
Length = 516
Score = 29.3 bits (66), Expect = 2.6
Identities = 17/72 (23%), Positives = 23/72 (31%), Gaps = 2/72 (2%)
Query: 65 RGSRTDPHSVGTGAHLVEGLTSLAPYIAGAALAGKLLSFIPTPLTRLAGLALQSAPLAAG 124
S + L GL +A A A LA L + GLA + A
Sbjct: 396 WQPCASGASTLS--GLGLGLLLVAGLTALAFLAHLLPLGLADAPGPALGLAALAGMAALY 453
Query: 125 ALYAYLSHKAES 136
L A L + +
Sbjct: 454 LLQALLQRRPQH 465
>gnl|CDD|179256 PRK01229, PRK01229, N-glycosylase/DNA lyase; Provisional.
Length = 208
Score = 29.1 bits (66), Expect = 2.7
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 11/56 (19%)
Query: 428 HRFSELKERHPVEAREVLEGLQEKLQGTKEIKTKSLI----------KEAINCFLR 473
HRF + + VEAR++ L+E ++ K+ KEA + FLR
Sbjct: 83 HRFYNKRAEYIVEARKLYGKLKEIIKADKDQFEAREFLVKNIKGIGYKEA-SHFLR 137
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 28.9 bits (64), Expect = 2.9
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 325 EPEPLPQYKEHSDRQKPSEPLAEHPHPKRKEVER--ELSEIEGAKKESS 371
P+ K+ K E L EH +++ E E E AK+E
Sbjct: 190 VQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEG 238
>gnl|CDD|114855 pfam06160, EzrA, Septation ring formation regulator, EzrA. During
the bacterial cell cycle, the tubulin-like cell-division
protein FtsZ polymerizes into a ring structure that
establishes the location of the nascent division site.
EzrA modulates the frequency and position of FtsZ ring
formation.
Length = 559
Score = 28.7 bits (65), Expect = 3.4
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 411 DATTFTESLPHVDEQ------TMHRFSELKER-HPVEAREVLEGLQEKLQGTKEI--KTK 461
+ ++ +L +++Q +F EL E +EAREVL L+E+ ++ +
Sbjct: 155 KSFSYGPALDELEKQLDELEEEFEQFVELTESGDYLEAREVLLKLEEETDALEQKMEEIP 214
Query: 462 SLIKEAINCF 471
L+KE N F
Sbjct: 215 PLLKELQNEF 224
>gnl|CDD|150235 pfam09490, CbtA, Probable cobalt transporter subunit (CbtA). This
entry represents a family of proteins which have been
proposed to act as cobalt transporters acting in concert
with vitamin B12 biosynthesis systems. Evidence for this
assignment includes 1) prediction of five transmembrane
segments, 2) positional gene linkage with known B12
biosynthesis genes, 3) upstream proximity of B12
transcriptional regulatory sites, 4) the absence of
other known cobalt import systems and 5) the obligate
co-localisation with a small protein (CbtB) having a
single additional transmembrane segment and a C-terminal
histidine-rich motif likely to be a metal-binding site.
Length = 228
Score = 28.1 bits (63), Expect = 4.6
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 91 IAGAALAGKLLSFIPTPLTRLAGLALQSAPLAAGA 125
A AL LL+F + L L +AP GA
Sbjct: 151 AAATALGLALLAFGRNWWAKALALVLLAAPHVIGA 185
>gnl|CDD|161841 TIGR00365, TIGR00365, monothiol glutaredoxin, Grx4 family. The
gene for the member of this glutaredoxin family in E.
coli, originally designated ydhD, is now designated
grxD. Its protein, Grx4, is a monothiol glutaredoxin
similar to Grx5 of yeast, which is involved in
iron-sulfur cluster formation.
Length = 97
Score = 28.2 bits (64), Expect = 5.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 2 YFNAVSDEDIRDNIKEWAQRP 22
Y N + D +IR IKE++ P
Sbjct: 46 YVNVLEDPEIRQGIKEYSNWP 66
>gnl|CDD|182344 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 27.7 bits (61), Expect = 6.9
Identities = 13/101 (12%), Positives = 24/101 (23%), Gaps = 3/101 (2%)
Query: 260 PYKHGVKSSSPGLHTSFDA--YEAHTDTLAHGVDSLVRGEYPHFDQEKLQTIADNTLE-D 316
P + +P Y + A E P +T
Sbjct: 400 PVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQ 459
Query: 317 PHFKPHLPEPEPLPQYKEHSDRQKPSEPLAEHPHPKRKEVE 357
++ +P Q + Q + P P +E +
Sbjct: 460 STYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETK 500
>gnl|CDD|183147 PRK11465, PRK11465, putative mechanosensitive channel protein;
Provisional.
Length = 741
Score = 27.4 bits (61), Expect = 8.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 403 TDAPHAKFDATTFTESLPH 421
T +PH F+ TF+ +L H
Sbjct: 122 TGSPHKPFNPQTFSNALTH 140
>gnl|CDD|183666 PRK12666, PRK12666, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 528
Score = 27.1 bits (61), Expect = 9.1
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 109 TRLAGLALQSAPLAAGALYAYLSH 132
T LA + L + A ALY YL H
Sbjct: 317 TLLAAIGLGNPAATAAALY-YLVH 339
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.314 0.132 0.388
Gapped
Lambda K H
0.267 0.0506 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 8,064,801
Number of extensions: 535864
Number of successful extensions: 914
Number of sequences better than 10.0: 1
Number of HSP's gapped: 910
Number of HSP's successfully gapped: 19
Length of query: 478
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 381
Effective length of database: 3,898,497
Effective search space: 1485327357
Effective search space used: 1485327357
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.0 bits)