RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781203|ref|YP_003065616.1| hypothetical protein CLIBASIA_05550 [Candidatus Liberibacter asiaticus str. psy62] (478 letters) >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Length = 388 Score = 26.2 bits (57), Expect = 6.5 Identities = 12/42 (28%), Positives = 17/42 (40%) Query: 225 DGLIGAFFGGMHSKQVQNMSLRLVNDLKEGITERLPYKHGVK 266 G I A G S+ Q + + EGI +PY +K Sbjct: 310 MGSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLK 351 >d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]} Length = 447 Score = 26.1 bits (57), Expect = 7.2 Identities = 6/25 (24%), Positives = 12/25 (48%) Query: 429 RFSELKERHPVEAREVLEGLQEKLQ 453 RF+ L P +A+ + + +L Sbjct: 348 RFAVLDRSFPEDAKRLRAQVAHELD 372 >d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]} Length = 149 Score = 25.5 bits (56), Expect = 9.0 Identities = 6/27 (22%), Positives = 13/27 (48%) Query: 368 KESSARKFFDEGSPDHSPFKGERNQKL 394 E+ A+ FF++ D + + + L Sbjct: 62 HENEAKSFFEKFHGDQECYYQDDLRVL 88 >d1p6va_ b.111.1.1 (A:) Small protein B (SmpB) {Aquifex aeolicus [TaxId: 63363]} Length = 128 Score = 25.5 bits (56), Expect = 9.8 Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 3/53 (5%) Query: 191 GMVERGWSSKVLEDHGYPDMAQHYRIFDMESLITDGLIGAFFGGMHSKQVQNM 243 G+V +G K L + G + + L + ++N Sbjct: 26 GIVLKGSEVKSLREKGTVSFKDSFVRIENGEAW---LYNLYIAPYKHATIENH 75 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.314 0.132 0.388 Gapped Lambda K H 0.267 0.0646 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,757,093 Number of extensions: 82167 Number of successful extensions: 129 Number of sequences better than 10.0: 1 Number of HSP's gapped: 129 Number of HSP's successfully gapped: 8 Length of query: 478 Length of database: 2,407,596 Length adjustment: 89 Effective length of query: 389 Effective length of database: 1,185,626 Effective search space: 461208514 Effective search space used: 461208514 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 55 (25.1 bits)