RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781203|ref|YP_003065616.1| hypothetical protein
CLIBASIA_05550 [Candidatus Liberibacter asiaticus str. psy62]
         (478 letters)



>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH)
           {Lyme disease spirochete (Borrelia burgdorferi) [TaxId:
           139]}
          Length = 388

 Score = 26.2 bits (57), Expect = 6.5
 Identities = 12/42 (28%), Positives = 17/42 (40%)

Query: 225 DGLIGAFFGGMHSKQVQNMSLRLVNDLKEGITERLPYKHGVK 266
            G I A   G  S+  Q  +      + EGI   +PY   +K
Sbjct: 310 MGSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLK 351


>d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase,
           PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]}
          Length = 447

 Score = 26.1 bits (57), Expect = 7.2
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 429 RFSELKERHPVEAREVLEGLQEKLQ 453
           RF+ L    P +A+ +   +  +L 
Sbjct: 348 RFAVLDRSFPEDAKRLRAQVAHELD 372


>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 149

 Score = 25.5 bits (56), Expect = 9.0
 Identities = 6/27 (22%), Positives = 13/27 (48%)

Query: 368 KESSARKFFDEGSPDHSPFKGERNQKL 394
            E+ A+ FF++   D   +  +  + L
Sbjct: 62  HENEAKSFFEKFHGDQECYYQDDLRVL 88


>d1p6va_ b.111.1.1 (A:) Small protein B (SmpB) {Aquifex aeolicus
           [TaxId: 63363]}
          Length = 128

 Score = 25.5 bits (56), Expect = 9.8
 Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 3/53 (5%)

Query: 191 GMVERGWSSKVLEDHGYPDMAQHYRIFDMESLITDGLIGAFFGGMHSKQVQNM 243
           G+V +G   K L + G       +   +        L   +        ++N 
Sbjct: 26  GIVLKGSEVKSLREKGTVSFKDSFVRIENGEAW---LYNLYIAPYKHATIENH 75


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0646    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,757,093
Number of extensions: 82167
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 8
Length of query: 478
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 389
Effective length of database: 1,185,626
Effective search space: 461208514
Effective search space used: 461208514
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.1 bits)