BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781203|ref|YP_003065616.1| hypothetical protein CLIBASIA_05550 [Candidatus Liberibacter asiaticus str. psy62] (478 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781203|ref|YP_003065616.1| hypothetical protein CLIBASIA_05550 [Candidatus Liberibacter asiaticus str. psy62] Length = 478 Score = 983 bits (2541), Expect = 0.0, Method: Compositional matrix adjust. Identities = 478/478 (100%), Positives = 478/478 (100%) Query: 1 MYFNAVSDEDIRDNIKEWAQRPRVSPDIKWHTGLGKEVINMPARSLDKLVAPFREETHDQ 60 MYFNAVSDEDIRDNIKEWAQRPRVSPDIKWHTGLGKEVINMPARSLDKLVAPFREETHDQ Sbjct: 1 MYFNAVSDEDIRDNIKEWAQRPRVSPDIKWHTGLGKEVINMPARSLDKLVAPFREETHDQ 60 Query: 61 PNYYRGSRTDPHSVGTGAHLVEGLTSLAPYIAGAALAGKLLSFIPTPLTRLAGLALQSAP 120 PNYYRGSRTDPHSVGTGAHLVEGLTSLAPYIAGAALAGKLLSFIPTPLTRLAGLALQSAP Sbjct: 61 PNYYRGSRTDPHSVGTGAHLVEGLTSLAPYIAGAALAGKLLSFIPTPLTRLAGLALQSAP 120 Query: 121 LAAGALYAYLSHKAESSIHHQIEGVDKETADALAWREAIVHTSALLAPGAIASQSIAKTV 180 LAAGALYAYLSHKAESSIHHQIEGVDKETADALAWREAIVHTSALLAPGAIASQSIAKTV Sbjct: 121 LAAGALYAYLSHKAESSIHHQIEGVDKETADALAWREAIVHTSALLAPGAIASQSIAKTV 180 Query: 181 ASGAVLNVPFGMVERGWSSKVLEDHGYPDMAQHYRIFDMESLITDGLIGAFFGGMHSKQV 240 ASGAVLNVPFGMVERGWSSKVLEDHGYPDMAQHYRIFDMESLITDGLIGAFFGGMHSKQV Sbjct: 181 ASGAVLNVPFGMVERGWSSKVLEDHGYPDMAQHYRIFDMESLITDGLIGAFFGGMHSKQV 240 Query: 241 QNMSLRLVNDLKEGITERLPYKHGVKSSSPGLHTSFDAYEAHTDTLAHGVDSLVRGEYPH 300 QNMSLRLVNDLKEGITERLPYKHGVKSSSPGLHTSFDAYEAHTDTLAHGVDSLVRGEYPH Sbjct: 241 QNMSLRLVNDLKEGITERLPYKHGVKSSSPGLHTSFDAYEAHTDTLAHGVDSLVRGEYPH 300 Query: 301 FDQEKLQTIADNTLEDPHFKPHLPEPEPLPQYKEHSDRQKPSEPLAEHPHPKRKEVEREL 360 FDQEKLQTIADNTLEDPHFKPHLPEPEPLPQYKEHSDRQKPSEPLAEHPHPKRKEVEREL Sbjct: 301 FDQEKLQTIADNTLEDPHFKPHLPEPEPLPQYKEHSDRQKPSEPLAEHPHPKRKEVEREL 360 Query: 361 SEIEGAKKESSARKFFDEGSPDHSPFKGERNQKLDPMRGADFTDAPHAKFDATTFTESLP 420 SEIEGAKKESSARKFFDEGSPDHSPFKGERNQKLDPMRGADFTDAPHAKFDATTFTESLP Sbjct: 361 SEIEGAKKESSARKFFDEGSPDHSPFKGERNQKLDPMRGADFTDAPHAKFDATTFTESLP 420 Query: 421 HVDEQTMHRFSELKERHPVEAREVLEGLQEKLQGTKEIKTKSLIKEAINCFLRTGGSL 478 HVDEQTMHRFSELKERHPVEAREVLEGLQEKLQGTKEIKTKSLIKEAINCFLRTGGSL Sbjct: 421 HVDEQTMHRFSELKERHPVEAREVLEGLQEKLQGTKEIKTKSLIKEAINCFLRTGGSL 478 >gi|254781172|ref|YP_003065585.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus str. psy62] Length = 731 Score = 24.3 bits (51), Expect = 4.7, Method: Compositional matrix adjust. Identities = 10/29 (34%), Positives = 15/29 (51%) Query: 272 LHTSFDAYEAHTDTLAHGVDSLVRGEYPH 300 L + +DA + D +AH L R E P+ Sbjct: 44 LDSEYDALKRRCDAIAHAFPDLARSEDPN 72 >537021.9.peg.1120_1 Length = 40 Score = 24.3 bits (51), Expect = 4.9, Method: Composition-based stats. Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 2/31 (6%) Query: 351 PKRKEV--ERELSEIEGAKKESSARKFFDEG 379 P+ KEV R L IE KESS RK EG Sbjct: 9 PREKEVVGSRTLRNIEKKPKESSTRKSSLEG 39 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.314 0.132 0.388 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 305,997 Number of Sequences: 1233 Number of extensions: 12775 Number of successful extensions: 24 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 6 length of query: 478 length of database: 328,796 effective HSP length: 77 effective length of query: 401 effective length of database: 233,855 effective search space: 93775855 effective search space used: 93775855 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 40 (20.0 bits)