HHsearch alignment for GI: 254781204 and conserved domain: PHA02512
>PHA02512 minor structural protein; Provisional.
Probab=100.00 E-value=0 Score=756.16 Aligned_cols=357 Identities=15% Similarity=0.211 Sum_probs=332.3
Q ss_pred CCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 33899988715013799999998756645645443235705799999740866667622102344456788999999999
Q gi|254781204|r 318 IPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHR 397 (707)
Q Consensus 318 ~~ldEFt~AYGv~eG~k~Y~~fq~~qiaG~DIatvq~MSt~~qtA~Leq~~P~~~~~pgegYAS~~~aaK~~DiLtKAhe 397 (707)
T Consensus 448 pt~def~~AyG~~~G~~~Ytef~ntq~~Gq~I~s~r~m~~ss~tA~ve~~~P~t~~-~gegya~r---a~~~d~v~~A~~ 523 (844)
T PHA02512 448 PGEADFIAAYGVREGNLRYTEFRNTQIAGQYIGSFRNMPTSSITAYVEQLRPDTEE-TGEGYAAR---AALFDNVTAAAS 523 (844)
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC-CCCCHHHH---HHHHHHHHHHHH
T ss_conf 86788999845351048999887668776566777528858899999850899898-87427999---888899999999
Q ss_pred HHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHCHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 99998543775557653250754537988889999752033688898718860345878899999998605647789999
Q gi|254781204|r 398 QSMQELNQDAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLI 477 (707)
Q Consensus 398 ~vnt~RnsDPiqyaiE~gQIdPLdF~tpe~FtASLaqR~S~V~sLkr~YGt~laiFSkqEA~qLSqqVrkAPASQsI~LL 477 (707)
T Consensus 524 ~V~k~R~~dP~q~s~~~~q~kpidm~n~~~f~~~va~R~s~~~dlak~ygtpl~~fS~~Ea~~ig~~~r~ap~sqq~ayL 603 (844)
T PHA02512 524 KVIKQRQADPFNAALAAGAAKPIAMNNKDDFGQEVALRAAQQEDLAKALGINAPFFSKDEAAAIGEFFRDAKDSNQAASL 603 (844)
T ss_pred HHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99998753837778763555764545867788899876301378998608985200676789999998638426678899
Q ss_pred HHHHHHCCCC--------------HHHHHHHHHHCCCCC---CCEEEEEH----HHHHCCCHHHHHHHHHHH---H---H
Q ss_conf 9974204643--------------145788987406778---87027861----245088878999999823---5---4
Q gi|254781204|r 478 RGAYNTLSDS--------------DKEGVRSSFAHIEDN---GLSAVVRL----SSEFSDDAKNAAMVILSG---M---K 530 (707)
Q Consensus 478 ~aI~qtLSns--------------~aeAyrA~l~qi~dN---gts~~V~~----Ss~i~~~p~~vA~vILsG---r---K 530 (707)
T Consensus 604 d~irq~~g~~~~y~~alqqis~na~saAvag~lm~kp~~~~~nt~~~~ae~~w~~~d~~v~p~~aaqtIl~Ga~arkg~~ 683 (844)
T PHA02512 604 DQIMGKTGGAPAMMQAAQAIAANAAAAAVAAILLDKPDGQYDNTKPIIAEKNFFGPDPSMNKEDAAKTILAGAAALKGTD 683 (844)
T ss_pred HHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 99973127737899999986535717788899847988755664210221365688865388999999983066525754
Q ss_pred HCCC-----CCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 2136-----57654311348888775567506801100000011035678888898763233202875520699999999
Q gi|254781204|r 531 HQKD-----TETRYNTDHKSNKFDSLYDSYINTPLTKLEQSTAGGNFNKDKEAIKLYLLGSMKDSGNYTLNRVRVSDAMQ 605 (707)
Q Consensus 531 A~KD-----v~lp~dTdlK~~f~DqVGNsfansP~trl~~s~~synl~KdayAikaY~sG~ms~~Gn~t~Nsdrv~dAiq 605 (707)
T Consensus 684 ~~k~~~~~~i~mPkd~dLr~eF~D~VgdaFAg----daqga~~aYeiaKd~YAGvmakkG~vs~~~~ge~d~D~w~qAin 759 (844)
T PHA02512 684 AAKDAGITPIPLPKDADLKLAFDDMVGDAFAG----DAQAAQLAYEIAKAAYAGIAAKKGDASMTKTDAADNDIVEKAAN 759 (844)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 21236766544886144569999987676358----86778889999999987888752776645566411489999886
Q ss_pred HHHCCCCCCCCCCEEEECCCCCHHHHHHH----HHHCCCCCC--CCCCEEEEEEECCCCEEEEEECCCCEECCCCCEEEE
Q ss_conf 87268202477632520368883347777----531276556--525000434521785068983798104448987899
Q gi|254781204|r 606 IVLGNTPVNINESMLMPPRGMSKTDFEDR----LWYATKDTG--EYDPYTIKYMNVGSGKYMIIKNGNPKVDKEGKTIII 679 (707)
Q Consensus 606 iaTGGiyk~~n~g~VmpPrGMDkstFkDR----l~y~~~~~g--~~~~~~i~~~~~g~~~y~i~~~~~~~~~k~g~~iii 679 (707)
T Consensus 760 vATGGV~d~~g~G~VllPwGM~~~qF~kqv~~a~~~~~~~~Gik~~~vg~~glqs~GdsQYlvklGsGyll~~dgtpvvi 839 (844)
T PHA02512 760 VATGGVHDGFGGGDVLLPFGMDAEQFDDQVNAAANEALKDAGIKTNAVGNFGLQNIGDNQYLLKLGSGRLAKDDGSNEAI 839 (844)
T ss_pred HHCCCEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEECCCCCCEEE
T ss_conf 52265030489864552157888899899999998755155667799653151034774268872560574589985567
Q ss_pred EHH
Q ss_conf 714
Q gi|254781204|r 680 NVE 682 (707)
Q Consensus 680 ~~~ 682 (707)
T Consensus 840 dl~ 842 (844)
T PHA02512 840 DLR 842 (844)
T ss_pred EEC
T ss_conf 511