HHsearch alignment for GI: 254781204 and conserved domain: PHA02512

>PHA02512 minor structural protein; Provisional.
Probab=100.00  E-value=0  Score=756.16  Aligned_cols=357  Identities=15%  Similarity=0.211  Sum_probs=332.3

Q ss_pred             CCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             33899988715013799999998756645645443235705799999740866667622102344456788999999999
Q gi|254781204|r  318 IPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHR  397 (707)
Q Consensus       318 ~~ldEFt~AYGv~eG~k~Y~~fq~~qiaG~DIatvq~MSt~~qtA~Leq~~P~~~~~pgegYAS~~~aaK~~DiLtKAhe  397 (707)
T Consensus       448 pt~def~~AyG~~~G~~~Ytef~ntq~~Gq~I~s~r~m~~ss~tA~ve~~~P~t~~-~gegya~r---a~~~d~v~~A~~  523 (844)
T PHA02512        448 PGEADFIAAYGVREGNLRYTEFRNTQIAGQYIGSFRNMPTSSITAYVEQLRPDTEE-TGEGYAAR---AALFDNVTAAAS  523 (844)
T ss_pred             CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC-CCCCHHHH---HHHHHHHHHHHH
T ss_conf             86788999845351048999887668776566777528858899999850899898-87427999---888899999999


Q ss_pred             HHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHCHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             99998543775557653250754537988889999752033688898718860345878899999998605647789999
Q gi|254781204|r  398 QSMQELNQDAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLI  477 (707)
Q Consensus       398 ~vnt~RnsDPiqyaiE~gQIdPLdF~tpe~FtASLaqR~S~V~sLkr~YGt~laiFSkqEA~qLSqqVrkAPASQsI~LL  477 (707)
T Consensus       524 ~V~k~R~~dP~q~s~~~~q~kpidm~n~~~f~~~va~R~s~~~dlak~ygtpl~~fS~~Ea~~ig~~~r~ap~sqq~ayL  603 (844)
T PHA02512        524 KVIKQRQADPFNAALAAGAAKPIAMNNKDDFGQEVALRAAQQEDLAKALGINAPFFSKDEAAAIGEFFRDAKDSNQAASL  603 (844)
T ss_pred             HHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             99998753837778763555764545867788899876301378998608985200676789999998638426678899


Q ss_pred             HHHHHHCCCC--------------HHHHHHHHHHCCCCC---CCEEEEEH----HHHHCCCHHHHHHHHHHH---H---H
Q ss_conf             9974204643--------------145788987406778---87027861----245088878999999823---5---4
Q gi|254781204|r  478 RGAYNTLSDS--------------DKEGVRSSFAHIEDN---GLSAVVRL----SSEFSDDAKNAAMVILSG---M---K  530 (707)
Q Consensus       478 ~aI~qtLSns--------------~aeAyrA~l~qi~dN---gts~~V~~----Ss~i~~~p~~vA~vILsG---r---K  530 (707)
T Consensus       604 d~irq~~g~~~~y~~alqqis~na~saAvag~lm~kp~~~~~nt~~~~ae~~w~~~d~~v~p~~aaqtIl~Ga~arkg~~  683 (844)
T PHA02512        604 DQIMGKTGGAPAMMQAAQAIAANAAAAAVAAILLDKPDGQYDNTKPIIAEKNFFGPDPSMNKEDAAKTILAGAAALKGTD  683 (844)
T ss_pred             HHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             99973127737899999986535717788899847988755664210221365688865388999999983066525754


Q ss_pred             HCCC-----CCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             2136-----57654311348888775567506801100000011035678888898763233202875520699999999
Q gi|254781204|r  531 HQKD-----TETRYNTDHKSNKFDSLYDSYINTPLTKLEQSTAGGNFNKDKEAIKLYLLGSMKDSGNYTLNRVRVSDAMQ  605 (707)
Q Consensus       531 A~KD-----v~lp~dTdlK~~f~DqVGNsfansP~trl~~s~~synl~KdayAikaY~sG~ms~~Gn~t~Nsdrv~dAiq  605 (707)
T Consensus       684 ~~k~~~~~~i~mPkd~dLr~eF~D~VgdaFAg----daqga~~aYeiaKd~YAGvmakkG~vs~~~~ge~d~D~w~qAin  759 (844)
T PHA02512        684 AAKDAGITPIPLPKDADLKLAFDDMVGDAFAG----DAQAAQLAYEIAKAAYAGIAAKKGDASMTKTDAADNDIVEKAAN  759 (844)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             21236766544886144569999987676358----86778889999999987888752776645566411489999886


Q ss_pred             HHHCCCCCCCCCCEEEECCCCCHHHHHHH----HHHCCCCCC--CCCCEEEEEEECCCCEEEEEECCCCEECCCCCEEEE
Q ss_conf             87268202477632520368883347777----531276556--525000434521785068983798104448987899
Q gi|254781204|r  606 IVLGNTPVNINESMLMPPRGMSKTDFEDR----LWYATKDTG--EYDPYTIKYMNVGSGKYMIIKNGNPKVDKEGKTIII  679 (707)
Q Consensus       606 iaTGGiyk~~n~g~VmpPrGMDkstFkDR----l~y~~~~~g--~~~~~~i~~~~~g~~~y~i~~~~~~~~~k~g~~iii  679 (707)
T Consensus       760 vATGGV~d~~g~G~VllPwGM~~~qF~kqv~~a~~~~~~~~Gik~~~vg~~glqs~GdsQYlvklGsGyll~~dgtpvvi  839 (844)
T PHA02512        760 VATGGVHDGFGGGDVLLPFGMDAEQFDDQVNAAANEALKDAGIKTNAVGNFGLQNIGDNQYLLKLGSGRLAKDDGSNEAI  839 (844)
T ss_pred             HHCCCEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEECCCCCCEEE
T ss_conf             52265030489864552157888899899999998755155667799653151034774268872560574589985567


Q ss_pred             EHH
Q ss_conf             714
Q gi|254781204|r  680 NVE  682 (707)
Q Consensus       680 ~~~  682 (707)
T Consensus       840 dl~  842 (844)
T PHA02512        840 DLR  842 (844)
T ss_pred             EEC
T ss_conf             511