RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781204|ref|YP_003065617.1| hypothetical protein
CLIBASIA_05555 [Candidatus Liberibacter asiaticus str. psy62]
(707 letters)
>1x46_A Globin chain, hemoglobin component VII; diptera, midge
larva, oxygen storage/transport complex; HET: HEM; 1.50A
{Tokunagayusurika akamusi} (A:)
Length = 150
Score = 29.7 bits (66), Expect = 1.1
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 484 LSDSDKEGVRSSFAHIEDNGLSAVVRL 510
+ D V+SS+A I D + +
Sbjct: 7 MEAGDIALVKSSWAQIHDKEVDILYNF 33
>1eca_A Erythrocruorin (AQUO Met); oxygen transport; HET: HEM; 1.40A
{Chironomus thummi thummi} (A:)
Length = 136
Score = 29.6 bits (66), Expect = 1.3
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 484 LSDSDKEGVRSSFAHIEDNGLSAVVRL 510
LS V++SF ++ + + + +
Sbjct: 1 LSADQISTVQASFDKVKGDPVGILYAV 27
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET:
MAL ABD; 1.70A {Geobacillus stearothermophilus}
(A:580-686)
Length = 107
Score = 28.8 bits (64), Expect = 2.2
Identities = 10/85 (11%), Positives = 23/85 (27%), Gaps = 4/85 (4%)
Query: 607 VLGNTPV----NINESMLMPPRGMSKTDFEDRLWYATKDTGEYDPYTIKYMNVGSGKYMI 662
+ GN P + + S + W+ K+ + +
Sbjct: 23 LTGNIPELGNWSTDTSGAVNNAQGPLLAPNYPDWFYVFSVPAGKTIQFKFFIKRADGTIQ 82
Query: 663 IKNGNPKVDKEGKTIIINVEDVNRD 687
+NG+ V N+ ++
Sbjct: 83 WENGSNHVATTPTGATGNITVTWQN 107
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase,
cytoplasm, RNA-binding, RNA binding, mitochondrion, rRNA
processing; 3.00A {Saccharomyces cerevisiae} (J:1-219)
Length = 219
Score = 28.3 bits (63), Expect = 3.6
Identities = 14/84 (16%), Positives = 25/84 (29%)
Query: 36 DALGKATQFLEGIRRDNAFATANTRYTELSFKAVQDFHDFTNSLDTRDSLQAGDKIKEYV 95
DA + +F+ A Y L V D + + + + + V
Sbjct: 38 DAQNELPKFILSDSPLELSAPIGKHYVVLDTNVVLQAIDLLENPNCFFDVIVPQIVLDEV 97
Query: 96 DGRIRSAYDRFLSSISHRDVRKKF 119
+ Y R + D K+F
Sbjct: 98 RNKSYPVYTRLRTLCRDSDDHKRF 121
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase,
phosphoprotein, nitrogen fixation, PER-ARNT-SIM,
metal-binding, PAS, iron; HET: HEM; 1.5A {Bradyrhizobium
japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A*
1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A*
1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A* (A:)
Length = 119
Score = 27.9 bits (61), Expect = 4.1
Identities = 12/104 (11%), Positives = 28/104 (26%), Gaps = 6/104 (5%)
Query: 598 VRVSDAMQIVLGNTP-----VNINESMLMPPRGMSKTDFEDRLWYATKDTGEYDPYTIKY 652
S A + + G + N+N M P R + +
Sbjct: 16 QLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGK 75
Query: 653 MNVGSGKYMIIKNGNPKVDKEGKTIIINVEDVNRDERMESTIRH 696
G+ M + + V D+ ++ ++ ++
Sbjct: 76 RRDGTTFPMHL-SIGEMQSGGEPYFTGFVRDLTEHQQTQARLQE 118
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP;
2.20A {Escherichia coli} (A:1-121,A:185-308)
Length = 245
Score = 27.9 bits (62), Expect = 4.1
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 45 LEGIRRDNAFATANTRYTELSFKAVQDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYD 104
LEG+ N + + V DF DF+ +D + L I ++ R + D
Sbjct: 127 LEGL---NVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTD 183
Query: 105 RFLSSISHRD 114
S +
Sbjct: 184 P-DSYFHNYA 192
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc
binding protein, ABC transporter; 1.80A {Treponema
pallidum} (A:1-195)
Length = 195
Score = 27.9 bits (61), Expect = 4.7
Identities = 16/130 (12%), Positives = 34/130 (26%), Gaps = 6/130 (4%)
Query: 66 FKAVQDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQAQVEH 125
D H +T + + L D I Y + + S + + +
Sbjct: 66 MGPGVDPHLYTATAGDVEWLGNADLIL-YNGLHLETKMGEVFSKLRGSRLVVAVSETIPV 124
Query: 126 DIRDYHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQ-RVQSITDHINSL 184
R + + + + P F R Q+ ++ L
Sbjct: 125 SQRLSLEE--AEFDPHVWFDVKLWSYSVKAVYESLCKLLPGKTREFTQRYQAYQQQLDKL 182
Query: 185 PIDLRLKQKL 194
D +++K
Sbjct: 183 --DAYVRRKA 190
>1cbg_A Cyanogenic beta-glucosidase; 2.15A {Trifolium repens}
(A:1-32,A:87-463)
Length = 409
Score = 27.7 bits (60), Expect = 4.8
Identities = 11/108 (10%), Positives = 26/108 (24%), Gaps = 3/108 (2%)
Query: 592 NYTLNRVRVSDAMQIVLGNTPVNINESMLMPPRGMSKTDFEDRLWYATKDTGEYDPYTIK 651
Y+ + + + + G W G
Sbjct: 271 YYSSYYAAKAPRIPNARPAIQTDSLINATFEHNGKPLGPMAASSWLCIYPQGIRKLLLYV 330
Query: 652 YMNVGSGKYMIIKNGNPKVDKEGKTIIINVEDVNRDERMESTIRHYEH 699
+ + I +NG + + + E + R++ RH +
Sbjct: 331 KNHYNNPVIYITENGRNEFNDP---TLSLQESLLDTPRIDYYYRHLYY 375
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel
beta sheet, helix- flanked five-stranded parallel beta
sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A
{Ralstonia eutropha} (A:1-150)
Length = 150
Score = 27.4 bits (60), Expect = 7.0
Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 5/53 (9%)
Query: 484 LSDSDKEGVRSSFA----HIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMKHQ 532
L+ K+ V+++ H D R+ + KN + Q
Sbjct: 2 LTQKTKDIVKATAPVLAEHGYDIIKCFYQRMFEAH-PELKNVFNMAHQEQGQQ 53
>2ra2_A Putative lipoprotein; X-RAY, NESG, STR88A, Q7CPV8,
structural genomics, PSI-2, protein structure
initiative; 1.90A {Salmonella typhimurium LT2} (A:)
Length = 64
Score = 27.0 bits (60), Expect = 7.1
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 10/50 (20%)
Query: 661 MIIKNGNPKVDKE----------GKTIIINVEDVNRDERMESTIRHYEHQ 700
I+ +G P+ D + G IN DV +E+ H+ H
Sbjct: 15 SIVTDGKPQTDNDTGXISYKDANGNKQQINRTDVKEXVALENLEHHHHHH 64
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.314 0.130 0.361
Gapped
Lambda K H
0.267 0.0470 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 4,994,164
Number of extensions: 225451
Number of successful extensions: 592
Number of sequences better than 10.0: 1
Number of HSP's gapped: 590
Number of HSP's successfully gapped: 18
Length of query: 707
Length of database: 4,956,049
Length adjustment: 95
Effective length of query: 612
Effective length of database: 1,744,574
Effective search space: 1067679288
Effective search space used: 1067679288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.8 bits)