RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781204|ref|YP_003065617.1| hypothetical protein
CLIBASIA_05555 [Candidatus Liberibacter asiaticus str. psy62]
(707 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 87.3 bits (216), Expect = 1e-17
Identities = 103/625 (16%), Positives = 185/625 (29%), Gaps = 255/625 (40%)
Query: 21 VRDSVNPQA-GLRD--LGDALGKA-TQFLEG--I-----------------RRD------ 51
V V P G D L L + +LEG I ++
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127
Query: 52 NAFATANTRYTELS----FKAVQDFHDFTNSLDTRDSLQA-----GDKIKEYVDGRIRSA 102
A A + + S F+AV + + L A G+ +Y + +R
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGE-GNA--------QLVAIFGGQGN-TDDYFE-ELRDL 176
Query: 103 YD-------RFLSSISHRDVRKKFQ--AQVEHDIRDYHTKGVDIQ--------------- 138
Y + + + + D T+G++I
Sbjct: 177 YQTYHVLVGDLIKFSA-----ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 139 ---------IGATQRAQEDNLNMTVGLAAAHVLH-DPSNENYFQ-RVQSITDHINSLPID 187
IG Q A V A +L P + ++ T H S
Sbjct: 232 LSIPISCPLIGVIQLAH-----YVV---TAKLLGFTPGE---LRSYLKGATGH--S---- 274
Query: 188 LRLKQKLLSEAKEKLNTNQIIGAHARDPRVF-ENFMRA----FY--KKGH---PPKDSTS 237
Q L++ I A F + +A F+ + + P TS
Sbjct: 275 ----QGLVTAV--------AI-AETDSWESFFVSVRKAITVLFFIGVRCYEAYPN---TS 318
Query: 238 LSDVSDSARERSLEVVEDV-SKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQ 296
L S E SLE E V S + ++ L + ++ +++ N N+ L
Sbjct: 319 L---PPSILEDSLENNEGVPSPMLSISN---L---TQEQVQDYV----NKTNSHLPAG-- 363
Query: 297 AQARRIDAQLNHG-----ITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVAR 351
++++ L +G ++ P L YG+ L++ K+ + D +R
Sbjct: 364 ---KQVEISLVNGAKNLVVSGPPQSL---------YGLNL-----TLRKAKAPSGLDQSR 406
Query: 352 IKLMSTFDAKK------FLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQ 405
I F +K FL +++P + L + ++L +
Sbjct: 407 I----PFSERKLKFSNRFLP------VASP--------FHSHL---LVPASDLINKDLVK 445
Query: 406 DAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQL 465
+ +S+ K QI P+ +DT + LR +G +++ +
Sbjct: 446 NNVSFNAKDIQI-PV-YDTFD--GSDLRVLSG---------SISER-------------I 479
Query: 466 VKRPASESVDLIRGAYN---TLSDSDKEGVRSSFAHIED---NGLSAVVRLSSEFSDDAK 519
V V T HI D G S + L+ +
Sbjct: 480 VDCIIRLPVKWET-TTQFKAT--------------HILDFGPGGASGLGVLTH------R 518
Query: 520 N----AAMVILSG-MKHQKDTETRY 539
N VI++G + D + +
Sbjct: 519 NKDGTGVRVIVAGTLDINPDDDYGF 543
Score = 54.2 bits (130), Expect = 1e-07
Identities = 47/298 (15%), Positives = 91/298 (30%), Gaps = 103/298 (34%)
Query: 376 SLSLASTMM--ATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDP-------LRF---- 422
L + + A++ +E K + + D +P +F
Sbjct: 19 VLLVPTASFFIASQLQEQFNKILPEPTEGFAAD----------DEPTTPAELVGKFLGYV 68
Query: 423 -DTEE-----SFADSLRQRAGFVKKIKDDYNLTTS--H-FNKTEENQLRTQLVKRPASES 473
E F L + + ++ Y L + H + T LVK
Sbjct: 69 SSLVEPSKVGQFDQVLNL---CLTEFENCY-LEGNDIHALAAKLLQENDTTLVKT----- 119
Query: 474 VDLIRGAYNTLSDSDKEGVRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMKHQK 533
+LI+ + + F + SA+ R E +A+ + I G Q
Sbjct: 120 KELIKNYITARIMAKR-----PFDKKSN---SALFRAVGE--GNAQ--LVAIFGG---QG 164
Query: 534 DTETRYNTDHKSNKFD---SLYDSYINTPLTKLEQ--STAGGNFNK----DKEAIKLYLL 584
+T+ Y F+ LY +Y L + + ++ +A K++
Sbjct: 165 NTDD-Y--------FEELRDLYQTY--HVL--VGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 585 G-----------SMKDSGNYTLNRVRVS----DAMQI--------VLGNTPVNINESM 619
G + D Y L+ + +S +Q+ +LG TP + +
Sbjct: 212 GLNILEWLENPSNTPDKD-YLLS-IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 40.4 bits (93), Expect = 0.001
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 9/28 (32%)
Query: 361 KKFLQ---KI--DDEYISNPSLSLASTM 383
KK LQ K+ DD S P+L++ +TM
Sbjct: 23 KK-LQASLKLYADD---SAPALAIKATM 46
Score = 32.7 bits (73), Expect = 0.27
Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 13/43 (30%)
Query: 488 DKEGVRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMK 530
+K+ ++ L A ++L ++DD+ A+ I + M+
Sbjct: 18 EKQALKK---------LQASLKL---YADDSA-PALAIKATME 47
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp
fold, amino-acid biosynthesis; HET: PLP; 1.53A
{Mycobacterium tuberculosis H37RV} PDB: 3fgp_A* 3dki_A*
3dwi_A*
Length = 325
Score = 33.1 bits (74), Expect = 0.25
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 546 NKFDSLYDSYINTPLTKLEQSTAGGNFNKDKEAIKLYL-------LGSMKDSGNY 593
++DSL + NTPL L++ + + +D ++L+ GS+KD
Sbjct: 4 TRYDSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAV 58
>1x46_A Globin chain, hemoglobin component VII; diptera, midge larva,
oxygen storage/transport complex; HET: HEM; 1.50A
{Tokunagayusurika akamusi}
Length = 150
Score = 30.5 bits (68), Expect = 1.2
Identities = 8/62 (12%), Positives = 17/62 (27%), Gaps = 5/62 (8%)
Query: 483 TLSDSDKEGVRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMKHQKDTETRYNTD 542
+ D V+SS+A I D + + + + S + +
Sbjct: 6 DMEAGDIALVKSSWAQIHDKEVDILYNFFKSYPA-----SQAKFSAFAGKDLESLKDTAP 60
Query: 543 HK 544
Sbjct: 61 FA 62
>1j36_A ANCE, angiotensin converting enzyme; hydrolase; HET: LPR; 2.40A
{Drosophila melanogaster} SCOP: d.92.1.5 PDB: 1j37_A*
1j38_A
Length = 607
Score = 29.7 bits (66), Expect = 2.6
Identities = 12/107 (11%), Positives = 34/107 (31%), Gaps = 7/107 (6%)
Query: 359 DAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQID 418
AK++L+ ++ E + T A Y+ + + + E++ + + +
Sbjct: 11 QAKEYLENLNKELA---KRTNVETEAAWAYRSAITDENEKKKNEISAELAKFMKEVASDT 67
Query: 419 PLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQL 465
+F + +R K + + E + +
Sbjct: 68 -TKFQWRS-YQSEDLKR--QFKALTKLGYAALPEDDYAELLDTLSAM 110
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating 1; rossmann fold,
oxidoreductase; HET: FLC; 2.37A {Saccharomyces
cerevisiae}
Length = 497
Score = 29.3 bits (65), Expect = 2.8
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 347 PDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQD 406
P +A + FL +I Y P L + + + + + K+ ++
Sbjct: 363 PAIALMWRGGCIIRSVFLGQITKAYREEP--DLENLLFNKFFADAVTKAQ-SGWRKSIAL 419
Query: 407 AISWGI 412
A ++GI
Sbjct: 420 ATTYGI 425
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A
{Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Length = 163
Score = 28.3 bits (63), Expect = 6.6
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 21/96 (21%)
Query: 464 QLVKRPASESVDLIRGAYNTLSDSDKEGVRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAM 523
+ + R A++ L+RG + R + G VV NA
Sbjct: 44 KTLGRLATKIATLLRGKH-----------RPDWTPNVAMGDFVVV----------VNADK 82
Query: 524 VILSGMKHQKDTETRYNTDHKSNKFDSLYDSYINTP 559
+ ++G K ++ TRY+ K L P
Sbjct: 83 IRVTGKKLEQKIYTRYSGYPGGLKKIPLEKMLATHP 118
>1xfi_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT2G17340, center for eukaryotic structural
genomics; 1.70A {Arabidopsis thaliana} SCOP: e.50.1.1
PDB: 2q40_A
Length = 367
Score = 27.9 bits (62), Expect = 8.5
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 470 ASESVDLIRGAYNTLSDSDKEGVRSSFAHIEDNGLSAVV----RLSSEFSDDAKNAAMVI 525
+E +++ + + GV +S I ++G V R+S E + + +A +VI
Sbjct: 259 CTELTEILSQLKD--ENGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADLVI 316
Query: 526 LSGM 529
+ GM
Sbjct: 317 VEGM 320
>1xq5_A Hemoglobin alpha-1 chain; FISH hemoglobin, rapid oxidation,
structural genomics, protein structure initiative, PSI,
CESG; HET: HEM; 1.90A {Perca flavescens} SCOP: a.1.1.2
PDB: 3bj1_A* 3bj2_A* 3bj3_A* 3bcq_A*
Length = 143
Score = 27.8 bits (61), Expect = 10.0
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 483 TLSDSDKEGVRSSFA----HIEDNGLSAVVRL 510
+LS DK+ V++ + E+ G A+ R+
Sbjct: 2 SLSSKDKDTVKALWGKIADKAEEIGSDALSRM 33
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.314 0.130 0.361
Gapped
Lambda K H
0.267 0.0497 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 5,697,287
Number of extensions: 263547
Number of successful extensions: 651
Number of sequences better than 10.0: 1
Number of HSP's gapped: 646
Number of HSP's successfully gapped: 34
Length of query: 707
Length of database: 5,693,230
Length adjustment: 99
Effective length of query: 608
Effective length of database: 3,293,074
Effective search space: 2002188992
Effective search space used: 2002188992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.4 bits)