BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781204|ref|YP_003065617.1| hypothetical protein CLIBASIA_05555 [Candidatus Liberibacter asiaticus str. psy62] (707 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781204|ref|YP_003065617.1| hypothetical protein CLIBASIA_05555 [Candidatus Liberibacter asiaticus str. psy62] Length = 707 Score = 1462 bits (3786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 707/707 (100%), Positives = 707/707 (100%) Query: 1 MIEITTNKPLVEAVTPNQDAVRDSVNPQAGLRDLGDALGKATQFLEGIRRDNAFATANTR 60 MIEITTNKPLVEAVTPNQDAVRDSVNPQAGLRDLGDALGKATQFLEGIRRDNAFATANTR Sbjct: 1 MIEITTNKPLVEAVTPNQDAVRDSVNPQAGLRDLGDALGKATQFLEGIRRDNAFATANTR 60 Query: 61 YTELSFKAVQDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQ 120 YTELSFKAVQDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQ Sbjct: 61 YTELSFKAVQDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQ 120 Query: 121 AQVEHDIRDYHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDH 180 AQVEHDIRDYHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDH Sbjct: 121 AQVEHDIRDYHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDH 180 Query: 181 INSLPIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSD 240 INSLPIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSD Sbjct: 181 INSLPIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSD 240 Query: 241 VSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQAR 300 VSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQAR Sbjct: 241 VSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQAR 300 Query: 301 RIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDA 360 RIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDA Sbjct: 301 RIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDA 360 Query: 361 KKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPL 420 KKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPL Sbjct: 361 KKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPL 420 Query: 421 RFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGA 480 RFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGA Sbjct: 421 RFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGA 480 Query: 481 YNTLSDSDKEGVRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMKHQKDTETRYN 540 YNTLSDSDKEGVRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMKHQKDTETRYN Sbjct: 481 YNTLSDSDKEGVRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMKHQKDTETRYN 540 Query: 541 TDHKSNKFDSLYDSYINTPLTKLEQSTAGGNFNKDKEAIKLYLLGSMKDSGNYTLNRVRV 600 TDHKSNKFDSLYDSYINTPLTKLEQSTAGGNFNKDKEAIKLYLLGSMKDSGNYTLNRVRV Sbjct: 541 TDHKSNKFDSLYDSYINTPLTKLEQSTAGGNFNKDKEAIKLYLLGSMKDSGNYTLNRVRV 600 Query: 601 SDAMQIVLGNTPVNINESMLMPPRGMSKTDFEDRLWYATKDTGEYDPYTIKYMNVGSGKY 660 SDAMQIVLGNTPVNINESMLMPPRGMSKTDFEDRLWYATKDTGEYDPYTIKYMNVGSGKY Sbjct: 601 SDAMQIVLGNTPVNINESMLMPPRGMSKTDFEDRLWYATKDTGEYDPYTIKYMNVGSGKY 660 Query: 661 MIIKNGNPKVDKEGKTIIINVEDVNRDERMESTIRHYEHQIFNEHAP 707 MIIKNGNPKVDKEGKTIIINVEDVNRDERMESTIRHYEHQIFNEHAP Sbjct: 661 MIIKNGNPKVDKEGKTIIINVEDVNRDERMESTIRHYEHQIFNEHAP 707 >gi|254781004|ref|YP_003065417.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 652 Score = 26.2 bits (56), Expect = 1.8, Method: Compositional matrix adjust. Identities = 14/44 (31%), Positives = 22/44 (50%) Query: 210 AHARDPRVFENFMRAFYKKGHPPKDSTSLSDVSDSARERSLEVV 253 HA V E+ R+ KK + + D+SD RE S+E++ Sbjct: 19 VHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVREGSIEII 62 >gi|254780301|ref|YP_003064714.1| dihydroorotase [Candidatus Liberibacter asiaticus str. psy62] Length = 431 Score = 26.2 bits (56), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/70 (25%), Positives = 32/70 (45%) Query: 305 QLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFL 364 +L ++ +P+++ L T G L +L +V A D++ I + FD + F Sbjct: 354 KLIRALSTRPAQIFNLPGGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFT 413 Query: 365 QKIDDEYISN 374 K+ YIS Sbjct: 414 GKVVRTYISG 423 >gi|254780607|ref|YP_003065020.1| hypothetical protein CLIBASIA_02470 [Candidatus Liberibacter asiaticus str. psy62] Length = 131 Score = 25.8 bits (55), Expect = 2.7, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%) Query: 364 LQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGI 412 L + D + S +L + YK++LEK + + + ++W I Sbjct: 27 LMQADMNQCTGNSFALVKEKLEATYKKVLEKVEKHQRELFEKSQMAWEI 75 >gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid protein [Candidatus Liberibacter asiaticus str. psy62] Length = 803 Score = 25.4 bits (54), Expect = 3.3, Method: Compositional matrix adjust. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 607 VLGNTPVNINESMLMPPRGMSKTDFEDRLWYATKDTGEYDPYTIKYMNVGSGKYMIIKNG 666 V+GN + I + + PP+ D+E LW D +++ + M+ ++G Sbjct: 495 VIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESG 554 Query: 667 NPKV 670 + V Sbjct: 555 SLTV 558 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.314 0.130 0.361 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 436,609 Number of Sequences: 1233 Number of extensions: 18102 Number of successful extensions: 40 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 9 length of query: 707 length of database: 328,796 effective HSP length: 80 effective length of query: 627 effective length of database: 230,156 effective search space: 144307812 effective search space used: 144307812 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 42 (20.8 bits)