Query         gi|254781205|ref|YP_003065618.1| hypothetical protein CLIBASIA_05560 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 171
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Wed Jun  1 01:45:17 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781205.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2eqy_A RBP2 like, jumonji, at   10.8      79  0.0033   12.8   1.3   40  120-163    53-92  (122)
  2 1f53_A Yeast killer toxin-like   9.8      43  0.0018   14.3  -0.3   30  122-151    51-80  (84)
  3 2yrk_A Zinc finger homeobox pr   8.8      51  0.0021   13.9  -0.3   18   25-42     18-35  (55)
  4 2cxy_A BAF250B subunit, HBAF25   8.4   1E+02  0.0043   12.2   1.1   30  121-154    63-92  (125)
  5 2jrz_A Histone demethylase jar   8.3   1E+02  0.0044   12.2   1.5   32  120-155    51-82  (117)
  6 1c20_A DEAD ringer protein; DN   7.3 1.2E+02  0.0049   11.9   1.2   40  120-163    63-103 (128)
  7 2jxj_A Histone demethylase jar   6.7 1.1E+02  0.0045   12.1   0.5   31  120-154    47-77  (96)
  8 2f6m_A Suppressor protein STP2   6.6      83  0.0035   12.7  -0.1   32   42-76      9-40  (65)
  9 3fhd_A ORF 37; enase like PD-(   6.0 1.2E+02  0.0052   11.7   0.5   27   67-95    222-248 (508)
 10 2w45_A Nuclease, alkaline exon   5.0 1.5E+02  0.0065   11.2   0.5   13   82-94    195-207 (470)

No 1  
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=10.75  E-value=79  Score=12.84  Aligned_cols=40  Identities=20%  Similarity=0.351  Sum_probs=22.4

Q ss_pred             HHHCHHHHHHHHHHCCCCEEEHHCCCCHHHCCHHHHHHHHHHHH
Q ss_conf             64121121066642154200001047701100013568888762
Q gi|254781205|r  120 KEAGWHRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRY  163 (171)
Q Consensus       120 keagwhrankeavknnrwasvaaiagppmvesassagmkmfrry  163 (171)
                      +-.|+..    ..+++.|..|+...|.|--.+++..=-+.+.+|
T Consensus        53 ~~GG~~~----V~~~~~W~~V~~~lg~~~~~~~~~~Lk~~Y~~y   92 (122)
T 2eqy_A           53 EEGGFAV----VCKDRKWTKIATKMGFAPGKAVGSHIRGHYERI   92 (122)
T ss_dssp             HHTCHHH----HHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHT
T ss_pred             HHCCHHH----HCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             9557988----456365999999868898784899999999999


No 2  
>1f53_A Yeast killer toxin-like protein; killer toxin-like protein,SKLP, crystallin family; NMR {Streptomyces SP} SCOP: b.11.1.4
Probab=9.81  E-value=43  Score=14.28  Aligned_cols=30  Identities=30%  Similarity=0.527  Sum_probs=24.5

Q ss_pred             HCHHHHHHHHHHCCCCEEEHHCCCCHHHCC
Q ss_conf             121121066642154200001047701100
Q gi|254781205|r  122 AGWHRANKEAVKNNRWASVAAIAGPPMVES  151 (171)
Q Consensus       122 agwhrankeavknnrwasvaaiagppmves  151 (171)
                      .-||.||-..|+-+||..+.--.-||-|..
T Consensus        51 v~y~danGd~v~i~r~~~it~PnrPp~V~~   80 (84)
T 1f53_A           51 LIYYDANGDSVRVDRWHDITYPNRPPKVNS   80 (84)
T ss_dssp             CEEEETTTEEEECCSSCEECCSSSCCCCCB
T ss_pred             EEEEECCCCEEEECCEEEEECCCCCCCCCE
T ss_conf             798835897578554248644899985228


No 3  
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=8.81  E-value=51  Score=13.90  Aligned_cols=18  Identities=39%  Similarity=0.497  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             134666655321246788
Q gi|254781205|r   25 ISSTLASHRSSIRDHEYR   42 (171)
Q Consensus        25 isstlashrssirdheyr   42 (171)
                      +-..--||+.|+|||-+-
T Consensus        18 ~C~vkYs~~~svrdHiFs   35 (55)
T 2yrk_A           18 LCGVKYSARLSIRDHIFS   35 (55)
T ss_dssp             TTTCCCCSSSCHHHHHTS
T ss_pred             CCCEEECCCCCHHHHHCC
T ss_conf             446130564333553311


No 4  
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=8.38  E-value=1e+02  Score=12.24  Aligned_cols=30  Identities=27%  Similarity=0.345  Sum_probs=19.0

Q ss_pred             HHCHHHHHHHHHHCCCCEEEHHCCCCHHHCCHHH
Q ss_conf             4121121066642154200001047701100013
Q gi|254781205|r  121 EAGWHRANKEAVKNNRWASVAAIAGPPMVESASS  154 (171)
Q Consensus       121 eagwhrankeavknnrwasvaaiagppmvesass  154 (171)
                      -.|+..    ..+++.|..|+...|.|...+++.
T Consensus        63 ~GG~~~----V~~~~~W~~va~~lg~~~~~~~~~   92 (125)
T 2cxy_A           63 IGGLAQ----VNKNKKWRELATNLNVGTSSSAAS   92 (125)
T ss_dssp             HTSHHH----HHHHTCHHHHHHHTTSCSSHHHHH
T ss_pred             HCCHHH----HCCCCCHHHHHHHHCCCCCCCHHH
T ss_conf             378577----466162999999859998897899


No 5  
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=8.30  E-value=1e+02  Score=12.19  Aligned_cols=32  Identities=31%  Similarity=0.483  Sum_probs=20.2

Q ss_pred             HHHCHHHHHHHHHHCCCCEEEHHCCCCHHHCCHHHH
Q ss_conf             641211210666421542000010477011000135
Q gi|254781205|r  120 KEAGWHRANKEAVKNNRWASVAAIAGPPMVESASSA  155 (171)
Q Consensus       120 keagwhrankeavknnrwasvaaiagppmvesassa  155 (171)
                      +..|+.    +..++++|..|+.--|-|.-.+++..
T Consensus        51 ~~GG~~----~V~~~~~W~~Va~~lg~~~~~~~~~~   82 (117)
T 2jrz_A           51 EEGGYE----AICKDRRWARVAQRLNYPPGKNIGSL   82 (117)
T ss_dssp             HHTCHH----HHHHTTTHHHHHHHTTCCTTCTHHHH
T ss_pred             HHCCHH----HCCCCCCHHHHHHHHCCCCCCCHHHH
T ss_conf             973898----61665868999998688988879999


No 6  
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=7.30  E-value=1.2e+02  Score=11.92  Aligned_cols=40  Identities=15%  Similarity=0.283  Sum_probs=22.1

Q ss_pred             HHHCHHHHHHHHHHCCCCEEEHHCCCCH-HHCCHHHHHHHHHHHH
Q ss_conf             6412112106664215420000104770-1100013568888762
Q gi|254781205|r  120 KEAGWHRANKEAVKNNRWASVAAIAGPP-MVESASSAGMKMFRRY  163 (171)
Q Consensus       120 keagwhrankeavknnrwasvaaiagpp-mvesassagmkmfrry  163 (171)
                      +..|+..    ..++++|..|+.--|-| ...+++.+=-+.+.+|
T Consensus        63 ~~GG~~~----V~~~~~W~~va~~lg~p~~~~~~~~~Lk~~Y~k~  103 (128)
T 1c20_A           63 ARGGLVD----VINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKY  103 (128)
T ss_dssp             HHTCHHH----HHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHH
T ss_pred             HHCCHHH----HCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             9368898----7563759999998789988787999999999999


No 7  
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=6.72  E-value=1.1e+02  Score=12.12  Aligned_cols=31  Identities=19%  Similarity=0.383  Sum_probs=19.0

Q ss_pred             HHHCHHHHHHHHHHCCCCEEEHHCCCCHHHCCHHH
Q ss_conf             64121121066642154200001047701100013
Q gi|254781205|r  120 KEAGWHRANKEAVKNNRWASVAAIAGPPMVESASS  154 (171)
Q Consensus       120 keagwhrankeavknnrwasvaaiagppmvesass  154 (171)
                      +-.|+...    .+++.|..|+.--|.|--.+++.
T Consensus        47 ~~GG~~~V----~~~~~W~~va~~lg~~~~~~~~~   77 (96)
T 2jxj_A           47 SKGGFEMV----TKEKKWSKVGSRLGYLPGKGTGS   77 (96)
T ss_dssp             HHHTTHHH----HHHTTHHHHHHHHTCCSCSCHHH
T ss_pred             HHCCHHHC----CCCCCHHHHHHHHCCCCCCCHHH
T ss_conf             82176761----45173999999868898786899


No 8  
>2f6m_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosomes, trafficking complex, vacuole protein sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=6.56  E-value=83  Score=12.73  Aligned_cols=32  Identities=22%  Similarity=0.314  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             88875421000002344120367664013342788
Q gi|254781205|r   42 RSLLAEENALRADVLYLDREDQARREGIMDTGVFR   76 (171)
Q Consensus        42 rsllaeenalradvlyldredqarregimdtgvfr   76 (171)
                      -.+.|||+|+.--+.||+   ++-+.|.++..+|-
T Consensus         9 ~~l~Aed~AieDaiy~L~---~aL~~g~I~ld~yl   40 (65)
T 2f6m_A            9 YNLVAQDYALTDTIEALS---RMLHRGTIPLDTFV   40 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHH---HHHHHTSSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHCCCCCHHHHH
T ss_conf             999989977899999999---99986985699999


No 9  
>3fhd_A ORF 37; enase like PD-(D/E)XK superfamily, hydrolase; 1.85A {Human herpesvirus 8 type M}
Probab=5.96  E-value=1.2e+02  Score=11.75  Aligned_cols=27  Identities=26%  Similarity=0.433  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf             40133427889988604665513666514
Q gi|254781205|r   67 EGIMDTGVFRMKAVLSGVSGASLDLLVGQ   95 (171)
Q Consensus        67 egimdtgvfrmkavlsgvsgasldllvgq   95 (171)
                      +.+.+.|.|-.  ..+|+-|||+|.+++-
T Consensus       222 ~~v~~cGL~Is--p~tGllGASpD~~~~~  248 (508)
T 3fhd_A          222 TNCLDYGFMQS--PQNGIFGVSLDFAANV  248 (508)
T ss_dssp             CEECCCCCEEC--TTTSSEEECCSEEEEE
T ss_pred             CCEECEEEEEC--CCCCCCEECCCEEEEE
T ss_conf             86332025764--8878300055427755


No 10 
>2w45_A Nuclease, alkaline exonuclease; endonuclease, gamma-herpesvirus, EBV, BGLF5, DNAse, hydrolase, epstein-BARR virus; 3.00A {Human herpesvirus 4} PDB: 2w4b_A
Probab=5.03  E-value=1.5e+02  Score=11.23  Aligned_cols=13  Identities=54%  Similarity=0.802  Sum_probs=0.0

Q ss_pred             HCCCCCCEEEEEE
Q ss_conf             0466551366651
Q gi|254781205|r   82 SGVSGASLDLLVG   94 (171)
Q Consensus        82 sgvsgasldllvg   94 (171)
                      +|+-|||+|.+++
T Consensus       195 ~Gl~GASpD~~~~  207 (470)
T 2w45_A          195 DGIFGVSLDLCVN  207 (470)
T ss_dssp             TSSEEECCSEEEE
T ss_pred             CCCCCCCCCCEEC
T ss_conf             7866668863422


Done!