Query gi|254781205|ref|YP_003065618.1| hypothetical protein CLIBASIA_05560 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 171 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed Jun 1 01:45:17 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781205.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2eqy_A RBP2 like, jumonji, at 10.8 79 0.0033 12.8 1.3 40 120-163 53-92 (122) 2 1f53_A Yeast killer toxin-like 9.8 43 0.0018 14.3 -0.3 30 122-151 51-80 (84) 3 2yrk_A Zinc finger homeobox pr 8.8 51 0.0021 13.9 -0.3 18 25-42 18-35 (55) 4 2cxy_A BAF250B subunit, HBAF25 8.4 1E+02 0.0043 12.2 1.1 30 121-154 63-92 (125) 5 2jrz_A Histone demethylase jar 8.3 1E+02 0.0044 12.2 1.5 32 120-155 51-82 (117) 6 1c20_A DEAD ringer protein; DN 7.3 1.2E+02 0.0049 11.9 1.2 40 120-163 63-103 (128) 7 2jxj_A Histone demethylase jar 6.7 1.1E+02 0.0045 12.1 0.5 31 120-154 47-77 (96) 8 2f6m_A Suppressor protein STP2 6.6 83 0.0035 12.7 -0.1 32 42-76 9-40 (65) 9 3fhd_A ORF 37; enase like PD-( 6.0 1.2E+02 0.0052 11.7 0.5 27 67-95 222-248 (508) 10 2w45_A Nuclease, alkaline exon 5.0 1.5E+02 0.0065 11.2 0.5 13 82-94 195-207 (470) No 1 >2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus} Probab=10.75 E-value=79 Score=12.84 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=22.4 Q ss_pred HHHCHHHHHHHHHHCCCCEEEHHCCCCHHHCCHHHHHHHHHHHH Q ss_conf 64121121066642154200001047701100013568888762 Q gi|254781205|r 120 KEAGWHRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRY 163 (171) Q Consensus 120 keagwhrankeavknnrwasvaaiagppmvesassagmkmfrry 163 (171) +-.|+.. ..+++.|..|+...|.|--.+++..=-+.+.+| T Consensus 53 ~~GG~~~----V~~~~~W~~V~~~lg~~~~~~~~~~Lk~~Y~~y 92 (122) T 2eqy_A 53 EEGGFAV----VCKDRKWTKIATKMGFAPGKAVGSHIRGHYERI 92 (122) T ss_dssp HHTCHHH----HHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHT T ss_pred HHCCHHH----HCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHH T ss_conf 9557988----456365999999868898784899999999999 No 2 >1f53_A Yeast killer toxin-like protein; killer toxin-like protein,SKLP, crystallin family; NMR {Streptomyces SP} SCOP: b.11.1.4 Probab=9.81 E-value=43 Score=14.28 Aligned_cols=30 Identities=30% Similarity=0.527 Sum_probs=24.5 Q ss_pred HCHHHHHHHHHHCCCCEEEHHCCCCHHHCC Q ss_conf 121121066642154200001047701100 Q gi|254781205|r 122 AGWHRANKEAVKNNRWASVAAIAGPPMVES 151 (171) Q Consensus 122 agwhrankeavknnrwasvaaiagppmves 151 (171) .-||.||-..|+-+||..+.--.-||-|.. T Consensus 51 v~y~danGd~v~i~r~~~it~PnrPp~V~~ 80 (84) T 1f53_A 51 LIYYDANGDSVRVDRWHDITYPNRPPKVNS 80 (84) T ss_dssp CEEEETTTEEEECCSSCEECCSSSCCCCCB T ss_pred EEEEECCCCEEEECCEEEEECCCCCCCCCE T ss_conf 798835897578554248644899985228 No 3 >2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4 Probab=8.81 E-value=51 Score=13.90 Aligned_cols=18 Identities=39% Similarity=0.497 Sum_probs=12.2 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 134666655321246788 Q gi|254781205|r 25 ISSTLASHRSSIRDHEYR 42 (171) Q Consensus 25 isstlashrssirdheyr 42 (171) +-..--||+.|+|||-+- T Consensus 18 ~C~vkYs~~~svrdHiFs 35 (55) T 2yrk_A 18 LCGVKYSARLSIRDHIFS 35 (55) T ss_dssp TTTCCCCSSSCHHHHHTS T ss_pred CCCEEECCCCCHHHHHCC T ss_conf 446130564333553311 No 4 >2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A Probab=8.38 E-value=1e+02 Score=12.24 Aligned_cols=30 Identities=27% Similarity=0.345 Sum_probs=19.0 Q ss_pred HHCHHHHHHHHHHCCCCEEEHHCCCCHHHCCHHH Q ss_conf 4121121066642154200001047701100013 Q gi|254781205|r 121 EAGWHRANKEAVKNNRWASVAAIAGPPMVESASS 154 (171) Q Consensus 121 eagwhrankeavknnrwasvaaiagppmvesass 154 (171) -.|+.. ..+++.|..|+...|.|...+++. T Consensus 63 ~GG~~~----V~~~~~W~~va~~lg~~~~~~~~~ 92 (125) T 2cxy_A 63 IGGLAQ----VNKNKKWRELATNLNVGTSSSAAS 92 (125) T ss_dssp HTSHHH----HHHHTCHHHHHHHTTSCSSHHHHH T ss_pred HCCHHH----HCCCCCHHHHHHHHCCCCCCCHHH T ss_conf 378577----466162999999859998897899 No 5 >2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A Probab=8.30 E-value=1e+02 Score=12.19 Aligned_cols=32 Identities=31% Similarity=0.483 Sum_probs=20.2 Q ss_pred HHHCHHHHHHHHHHCCCCEEEHHCCCCHHHCCHHHH Q ss_conf 641211210666421542000010477011000135 Q gi|254781205|r 120 KEAGWHRANKEAVKNNRWASVAAIAGPPMVESASSA 155 (171) Q Consensus 120 keagwhrankeavknnrwasvaaiagppmvesassa 155 (171) +..|+. +..++++|..|+.--|-|.-.+++.. T Consensus 51 ~~GG~~----~V~~~~~W~~Va~~lg~~~~~~~~~~ 82 (117) T 2jrz_A 51 EEGGYE----AICKDRRWARVAQRLNYPPGKNIGSL 82 (117) T ss_dssp HHTCHH----HHHHTTTHHHHHHHTTCCTTCTHHHH T ss_pred HHCCHH----HCCCCCCHHHHHHHHCCCCCCCHHHH T ss_conf 973898----61665868999998688988879999 No 6 >1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A Probab=7.30 E-value=1.2e+02 Score=11.92 Aligned_cols=40 Identities=15% Similarity=0.283 Sum_probs=22.1 Q ss_pred HHHCHHHHHHHHHHCCCCEEEHHCCCCH-HHCCHHHHHHHHHHHH Q ss_conf 6412112106664215420000104770-1100013568888762 Q gi|254781205|r 120 KEAGWHRANKEAVKNNRWASVAAIAGPP-MVESASSAGMKMFRRY 163 (171) Q Consensus 120 keagwhrankeavknnrwasvaaiagpp-mvesassagmkmfrry 163 (171) +..|+.. ..++++|..|+.--|-| ...+++.+=-+.+.+| T Consensus 63 ~~GG~~~----V~~~~~W~~va~~lg~p~~~~~~~~~Lk~~Y~k~ 103 (128) T 1c20_A 63 ARGGLVD----VINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKY 103 (128) T ss_dssp HHTCHHH----HHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHH T ss_pred HHCCHHH----HCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHH T ss_conf 9368898----7563759999998789988787999999999999 No 7 >2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens} Probab=6.72 E-value=1.1e+02 Score=12.12 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=19.0 Q ss_pred HHHCHHHHHHHHHHCCCCEEEHHCCCCHHHCCHHH Q ss_conf 64121121066642154200001047701100013 Q gi|254781205|r 120 KEAGWHRANKEAVKNNRWASVAAIAGPPMVESASS 154 (171) Q Consensus 120 keagwhrankeavknnrwasvaaiagppmvesass 154 (171) +-.|+... .+++.|..|+.--|.|--.+++. T Consensus 47 ~~GG~~~V----~~~~~W~~va~~lg~~~~~~~~~ 77 (96) T 2jxj_A 47 SKGGFEMV----TKEKKWSKVGSRLGYLPGKGTGS 77 (96) T ss_dssp HHHTTHHH----HHHTTHHHHHHHHTCCSCSCHHH T ss_pred HHCCHHHC----CCCCCHHHHHHHHCCCCCCCHHH T ss_conf 82176761----45173999999868898786899 No 8 >2f6m_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosomes, trafficking complex, vacuole protein sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A* Probab=6.56 E-value=83 Score=12.73 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=22.0 Q ss_pred HHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHH Q ss_conf 88875421000002344120367664013342788 Q gi|254781205|r 42 RSLLAEENALRADVLYLDREDQARREGIMDTGVFR 76 (171) Q Consensus 42 rsllaeenalradvlyldredqarregimdtgvfr 76 (171) -.+.|||+|+.--+.||+ ++-+.|.++..+|- T Consensus 9 ~~l~Aed~AieDaiy~L~---~aL~~g~I~ld~yl 40 (65) T 2f6m_A 9 YNLVAQDYALTDTIEALS---RMLHRGTIPLDTFV 40 (65) T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHTSSCHHHHH T ss_pred HHHHHHHHHHHHHHHHHH---HHHHCCCCCHHHHH T ss_conf 999989977899999999---99986985699999 No 9 >3fhd_A ORF 37; enase like PD-(D/E)XK superfamily, hydrolase; 1.85A {Human herpesvirus 8 type M} Probab=5.96 E-value=1.2e+02 Score=11.75 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=17.7 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEEC Q ss_conf 40133427889988604665513666514 Q gi|254781205|r 67 EGIMDTGVFRMKAVLSGVSGASLDLLVGQ 95 (171) Q Consensus 67 egimdtgvfrmkavlsgvsgasldllvgq 95 (171) +.+.+.|.|-. ..+|+-|||+|.+++- T Consensus 222 ~~v~~cGL~Is--p~tGllGASpD~~~~~ 248 (508) T 3fhd_A 222 TNCLDYGFMQS--PQNGIFGVSLDFAANV 248 (508) T ss_dssp CEECCCCCEEC--TTTSSEEECCSEEEEE T ss_pred CCEECEEEEEC--CCCCCCEECCCEEEEE T ss_conf 86332025764--8878300055427755 No 10 >2w45_A Nuclease, alkaline exonuclease; endonuclease, gamma-herpesvirus, EBV, BGLF5, DNAse, hydrolase, epstein-BARR virus; 3.00A {Human herpesvirus 4} PDB: 2w4b_A Probab=5.03 E-value=1.5e+02 Score=11.23 Aligned_cols=13 Identities=54% Similarity=0.802 Sum_probs=0.0 Q ss_pred HCCCCCCEEEEEE Q ss_conf 0466551366651 Q gi|254781205|r 82 SGVSGASLDLLVG 94 (171) Q Consensus 82 sgvsgasldllvg 94 (171) +|+-|||+|.+++ T Consensus 195 ~Gl~GASpD~~~~ 207 (470) T 2w45_A 195 DGIFGVSLDLCVN 207 (470) T ss_dssp TSSEEECCSEEEE T ss_pred CCCCCCCCCCEEC T ss_conf 7866668863422 Done!