BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781205|ref|YP_003065618.1| hypothetical protein
CLIBASIA_05560 [Candidatus Liberibacter asiaticus str. psy62]
(171 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254781205|ref|YP_003065618.1| hypothetical protein CLIBASIA_05560 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040882|gb|ACT57678.1| hypothetical protein CLIBASIA_05560 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 171
Score = 346 bits (888), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 171/171 (100%), Positives = 171/171 (100%)
Query: 1 MSIGMDDLLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDR 60
MSIGMDDLLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDR
Sbjct: 1 MSIGMDDLLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDR 60
Query: 61 EDQARREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQTVARFAK 120
EDQARREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQTVARFAK
Sbjct: 61 EDQARREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQTVARFAK 120
Query: 121 EAGWHRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRYNVKGKDAS 171
EAGWHRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRYNVKGKDAS
Sbjct: 121 EAGWHRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRYNVKGKDAS 171
>gi|317120671|gb|ADV02494.1| hypothetical protein SC1_gp050 [Liberibacter phage SC1]
gi|317120815|gb|ADV02636.1| hypothetical protein SC1_gp050 [Candidatus Liberibacter asiaticus]
Length = 167
Score = 338 bits (868), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 167/167 (100%), Positives = 167/167 (100%)
Query: 5 MDDLLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDREDQA 64
MDDLLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDREDQA
Sbjct: 1 MDDLLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDREDQA 60
Query: 65 RREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQTVARFAKEAGW 124
RREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQTVARFAKEAGW
Sbjct: 61 RREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQTVARFAKEAGW 120
Query: 125 HRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRYNVKGKDAS 171
HRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRYNVKGKDAS
Sbjct: 121 HRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRYNVKGKDAS 167
>gi|315121930|ref|YP_004062419.1| hypothetical protein CKC_00900 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|315122892|ref|YP_004063381.1| hypothetical protein CKC_05740 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495332|gb|ADR51931.1| hypothetical protein CKC_00900 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496294|gb|ADR52893.1| hypothetical protein CKC_05740 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 148
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 70/104 (67%)
Query: 25 ISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDREDQARREGIMDTGVFRMKAVLSGV 84
+ S +++ S+ + + YR+ LAEEN+ RAD+L+ +R ++ R+EG++D G+F+MKA +SG+
Sbjct: 18 VVSDMSTATSTSKSNRYRASLAEENSRRADILHSERAERLRKEGLLDAGLFQMKAEMSGL 77
Query: 85 SGASLDLLVGQNTRNAYKGINTARTAREQTVARFAKEAGWHRAN 128
SG S DL +GQ + + + A++ R TV RF KE W + N
Sbjct: 78 SGISADLWIGQRYADTEREVEKAQSTRFSTVQRFLKEQQWLKQN 121
>gi|315122425|ref|YP_004062914.1| hypothetical protein CKC_03385 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495827|gb|ADR52426.1| hypothetical protein CKC_03385 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 83
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 41/51 (80%)
Query: 41 YRSLLAEENALRADVLYLDREDQARREGIMDTGVFRMKAVLSGVSGASLDL 91
YRS LAEEN RA L+L+R ++A+REGI++ G+FRMK+ +SG+SG S D+
Sbjct: 33 YRSSLAEENVKRAGFLHLERMERAKREGILEAGLFRMKSEMSGLSGVSADI 83
>gi|296418189|ref|XP_002838724.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634685|emb|CAZ82915.1| unnamed protein product [Tuber melanosporum]
Length = 768
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 18 LVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDREDQARREGIMDTGVFRM 77
+ G S HR +RD +R+++ R D+ Y DRE+ + G + + +
Sbjct: 605 MFGLAFAYCSERLVHR--VRDRAFRTIM------RQDIAYFDREENS--TGALTSFLSTE 654
Query: 78 KAVLSGVSGASLDLLVGQNTRNAYK---GINTARTAREQTVARFAKE 121
LSG+SG +L L+ + ++ AY+ G TA +TVA +E
Sbjct: 655 TTHLSGMSGVTLGTLLIRRSKKAYEKSAGFACEATAAIRTVASLTRE 701
>gi|317120713|gb|ADV02535.1| hypothetical protein SC2_gp065 [Liberibacter phage SC2]
gi|317120774|gb|ADV02595.1| hypothetical protein SC2_gp065 [Candidatus Liberibacter asiaticus]
Length = 118
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%)
Query: 8 LLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDREDQARRE 67
L G S+ S L + ++ ++ I E R LA++NA AD+ LD+ Q R+E
Sbjct: 8 FLTGASVLSRFTKGILDYQADVSQAQAQIETDEQRKKLAQDNAHLADLETLDQISQKRKE 67
Query: 68 GIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINT 106
+ + R + G+S + +L +GQ + I T
Sbjct: 68 HVYLSSKMRSQMSARGLSPVTQELWLGQTLAEMEREIQT 106
>gi|164426746|ref|XP_960586.2| hypothetical protein NCU03584 [Neurospora crassa OR74A]
gi|157071460|gb|EAA31350.2| hypothetical protein NCU03584 [Neurospora crassa OR74A]
Length = 2083
Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 101 YKGINTARTAREQTVARFAKEAGWHRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMF 160
Y N + A Q V F K++GW+R N+ + + SV AI+GPP A ++G
Sbjct: 28 YIFTNISEGAASQVVHDFNKKSGWNRVNRLYMSASSSQSV-AISGPPSSLKAFASGHNFG 86
Query: 161 RRYNV 165
+ NV
Sbjct: 87 GKTNV 91
Searching..................................................done
Results from round 2
>gi|254781205|ref|YP_003065618.1| hypothetical protein CLIBASIA_05560 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040882|gb|ACT57678.1| hypothetical protein CLIBASIA_05560 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 171
Score = 281 bits (719), Expect = 2e-74, Method: Composition-based stats.
Identities = 171/171 (100%), Positives = 171/171 (100%)
Query: 1 MSIGMDDLLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDR 60
MSIGMDDLLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDR
Sbjct: 1 MSIGMDDLLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDR 60
Query: 61 EDQARREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQTVARFAK 120
EDQARREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQTVARFAK
Sbjct: 61 EDQARREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQTVARFAK 120
Query: 121 EAGWHRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRYNVKGKDAS 171
EAGWHRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRYNVKGKDAS
Sbjct: 121 EAGWHRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRYNVKGKDAS 171
>gi|317120671|gb|ADV02494.1| hypothetical protein SC1_gp050 [Liberibacter phage SC1]
gi|317120815|gb|ADV02636.1| hypothetical protein SC1_gp050 [Candidatus Liberibacter asiaticus]
Length = 167
Score = 274 bits (700), Expect = 4e-72, Method: Composition-based stats.
Identities = 167/167 (100%), Positives = 167/167 (100%)
Query: 5 MDDLLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDREDQA 64
MDDLLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDREDQA
Sbjct: 1 MDDLLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDREDQA 60
Query: 65 RREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQTVARFAKEAGW 124
RREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQTVARFAKEAGW
Sbjct: 61 RREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQTVARFAKEAGW 120
Query: 125 HRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRYNVKGKDAS 171
HRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRYNVKGKDAS
Sbjct: 121 HRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRYNVKGKDAS 167
>gi|315121930|ref|YP_004062419.1| hypothetical protein CKC_00900 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|315122892|ref|YP_004063381.1| hypothetical protein CKC_05740 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495332|gb|ADR51931.1| hypothetical protein CKC_00900 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496294|gb|ADR52893.1| hypothetical protein CKC_05740 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 148
Score = 162 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 42/104 (40%), Positives = 70/104 (67%)
Query: 25 ISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDREDQARREGIMDTGVFRMKAVLSGV 84
+ S +++ S+ + + YR+ LAEEN+ RAD+L+ +R ++ R+EG++D G+F+MKA +SG+
Sbjct: 18 VVSDMSTATSTSKSNRYRASLAEENSRRADILHSERAERLRKEGLLDAGLFQMKAEMSGL 77
Query: 85 SGASLDLLVGQNTRNAYKGINTARTAREQTVARFAKEAGWHRAN 128
SG S DL +GQ + + + A++ R TV RF KE W + N
Sbjct: 78 SGISADLWIGQRYADTEREVEKAQSTRFSTVQRFLKEQQWLKQN 121
>gi|315122425|ref|YP_004062914.1| hypothetical protein CKC_03385 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495827|gb|ADR52426.1| hypothetical protein CKC_03385 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 83
Score = 84.8 bits (208), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 26 SSTLASHRSSIRDHEYRSLLAEENALRADVLYLDREDQARREGIMDTGVFRMKAVLSGVS 85
S YRS LAEEN RA L+L+R ++A+REGI++ G+FRMK+ +SG+S
Sbjct: 18 ISQYKEGTQRAEADRYRSSLAEENVKRAGFLHLERMERAKREGILEAGLFRMKSEMSGLS 77
Query: 86 GASLDL 91
G S D+
Sbjct: 78 GVSADI 83
>gi|317120713|gb|ADV02535.1| hypothetical protein SC2_gp065 [Liberibacter phage SC2]
gi|317120774|gb|ADV02595.1| hypothetical protein SC2_gp065 [Candidatus Liberibacter asiaticus]
Length = 118
Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 46/99 (46%)
Query: 8 LLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDREDQARRE 67
L G S+ S L + ++ ++ I E R LA++NA AD+ LD+ Q R+E
Sbjct: 8 FLTGASVLSRFTKGILDYQADVSQAQAQIETDEQRKKLAQDNAHLADLETLDQISQKRKE 67
Query: 68 GIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINT 106
+ + R + G+S + +L +GQ + I T
Sbjct: 68 HVYLSSKMRSQMSARGLSPVTQELWLGQTLAEMEREIQT 106
>gi|111221654|ref|YP_712448.1| hypothetical protein FRAAL2220 [Frankia alni ACN14a]
gi|111149186|emb|CAJ60869.1| conserved hypothetical protein; putative coiled-coil domain
[Frankia alni ACN14a]
Length = 247
Score = 41.3 bits (95), Expect = 0.052, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Query: 33 RSSIRDHEYRSLLAEENALRADVLYLDREDQARREGIMDTGVFRMKAVLSGVSGASLDLL 92
S RD + A N+ + L + ARR+G+++ + G+ G L
Sbjct: 77 TRSARDSQRLESGAVTNSRELENLQAELASLARRQGVLEDDALEKMEAVEGLEGRLAAL- 135
Query: 93 VGQNTRNAYKGINTARTAREQTVARFAKEAGWHRANKEAV 132
Q + I+ A TAR++ A E+ R +++A+
Sbjct: 136 -DQRRADLQAEIDAAITARDKAYAEIDTESARMRQDRQAL 174
>gi|323447410|gb|EGB03332.1| hypothetical protein AURANDRAFT_55580 [Aureococcus anophagefferens]
Length = 3609
Score = 38.2 bits (87), Expect = 0.43, Method: Composition-based stats.
Identities = 34/175 (19%), Positives = 65/175 (37%), Gaps = 22/175 (12%)
Query: 9 LYGLSLASPLVGAGLRISSTLASHRSSIRDHEYR-----------SLLAEENALRADVLY 57
L + SP++ A + L+ +S Y+ E L +L+
Sbjct: 1965 LSEIEFKSPVLRAAIEKFMPLSFEMASQAAARYQLEEGRFVYLTPKSYLEMLGLYQTLLH 2024
Query: 58 LDREDQARREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQTVAR 117
RE+ ++ G+ R++ S V +L + + + + A AR + +
Sbjct: 2025 RRREENTTATVRLENGISRLRDAASAVGTLEQELTIMVQAADEKREHSEAIAARVAS-EK 2083
Query: 118 FAKEAGWHRANKEAVK----------NNRWASVAAIAGPPMVESASSAGMKMFRR 162
E +AN+EA K N A +A P +++A++A + RR
Sbjct: 2084 MVVERETDKANEEAGKVATIQAEVQRQNEDAERDLVAAEPAIQAATAALDTLDRR 2138
>gi|258648893|ref|ZP_05736362.1| putative fibronectin type III domain protein [Prevotella tannerae
ATCC 51259]
gi|260850921|gb|EEX70790.1| putative fibronectin type III domain protein [Prevotella tannerae
ATCC 51259]
Length = 396
Score = 37.0 bits (84), Expect = 0.89, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 2/102 (1%)
Query: 6 DDLLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLD--REDQ 63
DD+ GLS AS A + +A + + + +EN L + RE
Sbjct: 137 DDVAVGLSEASVKTLAPVSDEFNIAVSEITSNNAKIEITPKDENMRYYRFLVTEDVREQM 196
Query: 64 ARREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGIN 105
R G + ++ SG LD + QNT+ +
Sbjct: 197 IARNGSIQAADLAFWKEMAQQSGVELDQYITQNTKTGFSSFE 238
>gi|169620036|ref|XP_001803430.1| hypothetical protein SNOG_13219 [Phaeosphaeria nodorum SN15]
gi|160703952|gb|EAT79546.2| hypothetical protein SNOG_13219 [Phaeosphaeria nodorum SN15]
Length = 604
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 5/116 (4%)
Query: 21 AGLRISSTLASHRSSIRDHEYRSLLAEE--NALRADVLYLDREDQARREGIMDTGVFRMK 78
A LR S + + S+ +DH +++ EE +A A +++R ++ + G RM
Sbjct: 106 AELRKSKAMMNTPSTYQDHRFKTDYMEEMRSAYPASENHMERSNRIQAGLASILGPERMG 165
Query: 79 AVL---SGVSGASLDLLVGQNTRNAYKGINTARTAREQTVARFAKEAGWHRANKEA 131
+ SG SG D ++ ++ + + Q + R E HR +EA
Sbjct: 166 LGVGLPSGHSGIDNDPVLAKHNTDKRIQDTKDVYEQYQAMLRQQCEQQQHREAEEA 221
>gi|168008663|ref|XP_001757026.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691897|gb|EDQ78257.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 535
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 5/95 (5%)
Query: 32 HRSSIRDHEYRSLL---AEENALRADVLYLDREDQARREGIMDTGVFRMKAVLSGVSGAS 88
S+ R+H + A+ V L+ ++A+ +M F+M SG+
Sbjct: 324 AYSTARNHREEAKYFRPADRYHEEKGVNSLEVHERAKPSSVMKQSEFKMDVNRSGLMTTQ 383
Query: 89 LDLLVGQNTRNAYKGINTARTAREQTVARFAKEAG 123
DL +G+ K T R AR EA
Sbjct: 384 NDLAMGRRKAEGEKA--TVEVRRADKTARRVMEAQ 416
>gi|322515202|ref|ZP_08068201.1| DNA-directed DNA polymerase IV [Actinobacillus ureae ATCC 25976]
gi|322118812|gb|EFX91013.1| DNA-directed DNA polymerase IV [Actinobacillus ureae ATCC 25976]
Length = 356
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 13/105 (12%)
Query: 36 IRDHEYRSLLAEENALRADVLYLDREDQARREGIMDTGVFRM-----KAVLSGVSGASLD 90
I + R LA EN L D+ +L +Q E + VFR+ K L ++
Sbjct: 237 IEVNRPRKSLAVENTLPTDIWHLSEAEQIVDE-LFKKLVFRLQRNWGKRSLQEFKKLAIK 295
Query: 91 LLVGQNTRNAYKGINTARTAREQTVARFAK--EAGWHRANKEAVK 133
L G T+ + RT ++ RF + + W R N +V+
Sbjct: 296 LKFGDFTQTTLE-----RTTDGLSLERFIELLQQVWQRTNHRSVR 335
>gi|208608058|emb|CAP09852.1| RNA dependent RNA polymerase [Infectious pancreatic necrosis virus]
gi|208608072|emb|CAP09859.1| RNA dependent RNA polymerase [Infectious pancreatic necrosis virus]
Length = 75
Score = 36.3 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 99 NAYKGINTARTAREQTVARFAKEAGWHRANKEAVKNNRWASVAAIAGPPMVESASSAGMK 158
+ KG A + Q +A + GW AN N WA++A I P +V +S M
Sbjct: 10 DLEKGEANATKSHAQALAYYLLTRGWVGANGAPEFNATWATIAMIIAPALVVDSSCLFMN 69
Query: 159 M 159
+
Sbjct: 70 L 70
>gi|85859159|ref|YP_461361.1| hypothetical protein SYN_02855 [Syntrophus aciditrophicus SB]
gi|85722250|gb|ABC77193.1| hypothetical exported protein [Syntrophus aciditrophicus SB]
Length = 510
Score = 35.9 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 9/129 (6%)
Query: 24 RISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDREDQARREGIMDTGVFRMKAVLSG 83
R + S + + ++RSL AE N L A++ L+ R + + KA
Sbjct: 91 RALTDKGSAVNDAKRKQHRSLTAERNRLAAEIKGLE-----ARIAFWQS---QTKAKTRS 142
Query: 84 VS-GASLDLLVGQNTRNAYKGINTARTAREQTVARFAKEAGWHRANKEAVKNNRWASVAA 142
++ +L ++ +NT+ A++ T RE+ R A + +EA K + S++
Sbjct: 143 LNDAVNLSAVISRNTKKAWQEKMTLEEEREELDQRIATLQAEMKNPREAAKADWEVSLSL 202
Query: 143 IAGPPMVES 151
+ P S
Sbjct: 203 LGLKPESRS 211
>gi|146292632|ref|YP_001183056.1| SMC domain-containing protein [Shewanella putrefaciens CN-32]
gi|145564322|gb|ABP75257.1| SMC domain protein [Shewanella putrefaciens CN-32]
Length = 1018
Score = 35.9 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 42/98 (42%), Gaps = 16/98 (16%)
Query: 37 RDHEYRSLLAEENALRADVLYLDREDQARREGIMDTGVFRMKAVLSGVSGASLDLLVGQN 96
+ H YR + + AD+ L ++ ++RR+GI+ + +G + D +
Sbjct: 183 QTHIYRRIEDSLKSKAADIRALVKDQRSRRDGILQS------------AGLASDDELSCE 230
Query: 97 TRNAYKGINTARTAREQTVARFAKEAGWHRANKEAVKN 134
+ TA++A+EQ + + W +A ++
Sbjct: 231 LAKLTPELETAQSAKEQALQ----QQQWVIKTSDAAQH 264
>gi|319425936|gb|ADV54010.1| dsDNA exonuclease, SbcC [Shewanella putrefaciens 200]
Length = 1018
Score = 35.9 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 42/98 (42%), Gaps = 16/98 (16%)
Query: 37 RDHEYRSLLAEENALRADVLYLDREDQARREGIMDTGVFRMKAVLSGVSGASLDLLVGQN 96
+ H YR + + AD+ L ++ ++RR+GI+ + +G + D +
Sbjct: 183 QTHIYRRIEDSLKSKAADIRALVKDQRSRRDGILQS------------AGLASDDELSCE 230
Query: 97 TRNAYKGINTARTAREQTVARFAKEAGWHRANKEAVKN 134
+ TA++A+EQ + + W +A ++
Sbjct: 231 LAKLTPELETAQSAKEQALQ----QQQWVIKTSDAAQH 264
>gi|120599371|ref|YP_963945.1| SMC domain-containing protein [Shewanella sp. W3-18-1]
gi|120559464|gb|ABM25391.1| SMC domain protein [Shewanella sp. W3-18-1]
Length = 1018
Score = 35.9 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 42/98 (42%), Gaps = 16/98 (16%)
Query: 37 RDHEYRSLLAEENALRADVLYLDREDQARREGIMDTGVFRMKAVLSGVSGASLDLLVGQN 96
+ H YR + + AD+ L ++ ++RR+GI+ + +G + D +
Sbjct: 183 QTHIYRRIEDSLKSKAADIRALVKDQRSRRDGILQS------------AGLASDDELSCE 230
Query: 97 TRNAYKGINTARTAREQTVARFAKEAGWHRANKEAVKN 134
+ TA++A+EQ + + W +A ++
Sbjct: 231 LAKLTPELETAQSAKEQALQ----QQQWVIKTSDAAQH 264
>gi|326780466|ref|ZP_08239731.1| lipid A biosynthesis acyltransferase [Streptomyces cf. griseus
XylebKG-1]
gi|326660799|gb|EGE45645.1| lipid A biosynthesis acyltransferase [Streptomyces cf. griseus
XylebKG-1]
Length = 307
Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 77 MKAVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQTVARFAKEAGWHRANKEAVK-NN 135
M A S + G D L G K A +T+A + W R K ++ +
Sbjct: 1 MSAGASDLKGRLTDGLYGLGWGAVKKLPEPAAARLFRTIA----DQVWKRRGKSVLRLES 56
Query: 136 RWASVAAIAGPPMVESASSAGMKMFRRY 163
A V AGP + S AGM+ + RY
Sbjct: 57 NLARVVPDAGPARLAELSRAGMRSYMRY 84
>gi|218304263|emb|CAN87025.1| pol protein [Simian immunodeficiency virus]
Length = 1022
Score = 34.7 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 7/134 (5%)
Query: 42 RSLLAEENALRADVLYLDREDQARREGIMDTGVFRMK-AVLSGVSGASLDLLVGQNTRNA 100
+ ++ +N D+++ RED + E + +F G+ G+ + LV T +
Sbjct: 887 QGVIESKNRRLKDIIHSIREDAEKLETALAMALFIHNFKEKGGLGGSPAERLVNMITSDL 946
Query: 101 YKGINTARTAREQTVA---RFAKEAGWHRANKEAVKNNRWASVAAIAGPPMVESASSAGM 157
+ + + R W K K I P + +
Sbjct: 947 ETQQTQQQKLKFKNFQVYYRTGANQQWQGPGKLPWKGE---GALVIETPEGIITVPRRKA 1003
Query: 158 KMFRRYNVKGKDAS 171
K+ + +N +G D S
Sbjct: 1004 KLIKVWNGEGMDRS 1017
>gi|239907598|ref|YP_002954339.1| methyl-accepting chemotaxis protein [Desulfovibrio magneticus RS-1]
gi|239797464|dbj|BAH76453.1| methyl-accepting chemotaxis protein [Desulfovibrio magneticus RS-1]
Length = 677
Score = 34.3 bits (77), Expect = 5.9, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 13 SLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDREDQARREGIMDT 72
+L+ L +++ + + + + R+ E ++ +A + RAD R +QA+REG++
Sbjct: 339 ALSDSLDAMAVKLRAMIETATAKTREAEEQTEIARQATARADEARS-RAEQAKREGML-A 396
Query: 73 GVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQTVA 116
R++ V++ VS AS +L Q + + AR E A
Sbjct: 397 AAGRLEGVVAVVSSASEEL-SSQVEESNHGAQEQARRTAETATA 439
>gi|313112697|ref|ZP_07798349.1| hypothetical protein HMPREF9436_00189 [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310624987|gb|EFQ08290.1| hypothetical protein HMPREF9436_00189 [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 1097
Score = 34.3 bits (77), Expect = 6.6, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 19/124 (15%)
Query: 29 LASHRSSIRDHEYRSL--LAEENALRADVLYLDREDQARREGIMDTGVFRMKAVLSGV-- 84
L++H ++ E R+L L EE + R L + AR+ ++ + R +++L+ +
Sbjct: 320 LSAHGAASASGEGRALDALTEELSRRKTAL----DTAARKAEKAESALARTQSLLAVLRR 375
Query: 85 SGASLDLLVGQNTRNA-----------YKGINTARTAREQTVARFAKEAGWHRANKEAVK 133
SG + + + T + K + A A Q A KE RA +AV
Sbjct: 376 SGFAAGIKAEELTADTLPQLTAWLSAQEKPLEEAYFAARQNTAALQKEQAGKRAELDAVS 435
Query: 134 NNRW 137
+W
Sbjct: 436 GGKW 439
>gi|239905513|ref|YP_002952252.1| methyl-accepting chemotaxis protein [Desulfovibrio magneticus RS-1]
gi|239795377|dbj|BAH74366.1| methyl-accepting chemotaxis protein [Desulfovibrio magneticus RS-1]
Length = 601
Score = 34.0 bits (76), Expect = 7.1, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 15/116 (12%)
Query: 33 RSSIRDHEYRSLLAEENALRADVLYLD------REDQARREGIMDTGVFRMKAVLSGVSG 86
++ I + E +++LAEE +A V + + D+A+REG++D +++AV+ ++
Sbjct: 258 KAKISEAESKTILAEEETKKAQVATKEAEEARRQADRAKREGMLDAA-NKLEAVVESITS 316
Query: 87 AS-----LDLLVGQNTRNAYKGINTARTARE---QTVARFAKEAGWHRANKEAVKN 134
AS + + +N+ + + + A TA E T+ AK A E KN
Sbjct: 317 ASDQLNAQSIELSKNSDSQARRVTEAATAMEEMNSTIIEVAKNASQATLTSENAKN 372
>gi|227548602|ref|ZP_03978651.1| possible cadmium-exporting ATPase [Corynebacterium lipophiloflavum
DSM 44291]
gi|227079325|gb|EEI17288.1| possible cadmium-exporting ATPase [Corynebacterium lipophiloflavum
DSM 44291]
Length = 644
Score = 34.0 bits (76), Expect = 7.2, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 21 AGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDREDQARREGIMDTGVFRMKAV 80
+GLR L ++I H +A E + DVL L ++ +GI+ +G
Sbjct: 117 SGLRALLALIPSTATIISHGVTRSVAVEELVPGDVLRLAAGERLATDGIIRSG--HSSLD 174
Query: 81 LSGVSGASLDLLVGQNTRNAYKGINT 106
+S ++G S+ + VG INT
Sbjct: 175 VSAITGESIPVEVGPGDAVLAGSINT 200
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.311 0.128 0.339
Lambda K H
0.267 0.0392 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,718,579,248
Number of Sequences: 14124377
Number of extensions: 91392224
Number of successful extensions: 277066
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 277046
Number of HSP's gapped (non-prelim): 74
length of query: 171
length of database: 4,842,793,630
effective HSP length: 129
effective length of query: 42
effective length of database: 3,020,748,997
effective search space: 126871457874
effective search space used: 126871457874
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 76 (33.9 bits)