BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781205|ref|YP_003065618.1| hypothetical protein CLIBASIA_05560 [Candidatus Liberibacter asiaticus str. psy62] (171 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254781205|ref|YP_003065618.1| hypothetical protein CLIBASIA_05560 [Candidatus Liberibacter asiaticus str. psy62] gi|254040882|gb|ACT57678.1| hypothetical protein CLIBASIA_05560 [Candidatus Liberibacter asiaticus str. psy62] Length = 171 Score = 329 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 171/171 (100%), Positives = 171/171 (100%) Query: 1 MSIGMDDLLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDR 60 MSIGMDDLLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDR Sbjct: 1 MSIGMDDLLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDR 60 Query: 61 EDQARREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQTVARFAK 120 EDQARREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQTVARFAK Sbjct: 61 EDQARREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQTVARFAK 120 Query: 121 EAGWHRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRYNVKGKDAS 171 EAGWHRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRYNVKGKDAS Sbjct: 121 EAGWHRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRYNVKGKDAS 171 >gi|317120671|gb|ADV02494.1| hypothetical protein SC1_gp050 [Liberibacter phage SC1] gi|317120815|gb|ADV02636.1| hypothetical protein SC1_gp050 [Candidatus Liberibacter asiaticus] Length = 167 Score = 321 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 167/167 (100%), Positives = 167/167 (100%) Query: 5 MDDLLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDREDQA 64 MDDLLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDREDQA Sbjct: 1 MDDLLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDREDQA 60 Query: 65 RREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQTVARFAKEAGW 124 RREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQTVARFAKEAGW Sbjct: 61 RREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQTVARFAKEAGW 120 Query: 125 HRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRYNVKGKDAS 171 HRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRYNVKGKDAS Sbjct: 121 HRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRYNVKGKDAS 167 >gi|315121930|ref|YP_004062419.1| hypothetical protein CKC_00900 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|315122892|ref|YP_004063381.1| hypothetical protein CKC_05740 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495332|gb|ADR51931.1| hypothetical protein CKC_00900 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496294|gb|ADR52893.1| hypothetical protein CKC_05740 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 148 Score = 90.2 bits (222), Expect = 9e-17, Method: Composition-based stats. Identities = 42/104 (40%), Positives = 70/104 (67%) Query: 25 ISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDREDQARREGIMDTGVFRMKAVLSGV 84 + S +++ S+ + + YR+ LAEEN+ RAD+L+ +R ++ R+EG++D G+F+MKA +SG+ Sbjct: 18 VVSDMSTATSTSKSNRYRASLAEENSRRADILHSERAERLRKEGLLDAGLFQMKAEMSGL 77 Query: 85 SGASLDLLVGQNTRNAYKGINTARTAREQTVARFAKEAGWHRAN 128 SG S DL +GQ + + + A++ R TV RF KE W + N Sbjct: 78 SGISADLWIGQRYADTEREVEKAQSTRFSTVQRFLKEQQWLKQN 121 >gi|315122425|ref|YP_004062914.1| hypothetical protein CKC_03385 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495827|gb|ADR52426.1| hypothetical protein CKC_03385 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 83 Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 29/51 (56%), Positives = 41/51 (80%) Query: 41 YRSLLAEENALRADVLYLDREDQARREGIMDTGVFRMKAVLSGVSGASLDL 91 YRS LAEEN RA L+L+R ++A+REGI++ G+FRMK+ +SG+SG S D+ Sbjct: 33 YRSSLAEENVKRAGFLHLERMERAKREGILEAGLFRMKSEMSGLSGVSADI 83 >gi|296418189|ref|XP_002838724.1| hypothetical protein [Tuber melanosporum Mel28] gi|295634685|emb|CAZ82915.1| unnamed protein product [Tuber melanosporum] Length = 768 Score = 40.5 bits (93), Expect = 0.081, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 13/93 (13%) Query: 32 HRSSIRDHEYRSLLAEENALRADVLYLDREDQARREGIMDTGVFRMKAVLSGVSGASLDL 91 HR +RD +R+++ R D+ Y DRE+ + G + + + LSG+SG +L Sbjct: 619 HR--VRDRAFRTIM------RQDIAYFDREENS--TGALTSFLSTETTHLSGMSGVTLGT 668 Query: 92 LVGQNTRNAYK---GINTARTAREQTVARFAKE 121 L+ + ++ AY+ G TA +TVA +E Sbjct: 669 LLIRRSKKAYEKSAGFACEATAAIRTVASLTRE 701 >gi|317120713|gb|ADV02535.1| hypothetical protein SC2_gp065 [Liberibacter phage SC2] gi|317120774|gb|ADV02595.1| hypothetical protein SC2_gp065 [Candidatus Liberibacter asiaticus] Length = 118 Score = 40.5 bits (93), Expect = 0.091, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 46/99 (46%) Query: 8 LLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDREDQARRE 67 L G S+ S L + ++ ++ I E R LA++NA AD+ LD+ Q R+E Sbjct: 8 FLTGASVLSRFTKGILDYQADVSQAQAQIETDEQRKKLAQDNAHLADLETLDQISQKRKE 67 Query: 68 GIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINT 106 + + R + G+S + +L +GQ + I T Sbjct: 68 HVYLSSKMRSQMSARGLSPVTQELWLGQTLAEMEREIQT 106 >gi|330990550|ref|ZP_08314508.1| Nif-specific regulatory protein [Gluconacetobacter sp. SXCC-1] gi|329762453|gb|EGG78939.1| Nif-specific regulatory protein [Gluconacetobacter sp. SXCC-1] Length = 524 Score = 35.9 bits (81), Expect = 2.3, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 20/118 (16%) Query: 6 DDLLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDREDQAR 65 DD++ L + S L+G +++ T+ H ++ HE+ LL ENAL E+ Sbjct: 164 DDIMI-LQIISTLIGQLMKLGDTVEEHTRAL--HEHNQLL--ENAL---------ENATM 209 Query: 66 REGIMDTGVFRMKAV--LSGVSGASLDLLV----GQNTRNAYKGINTARTAREQTVAR 117 R GI+ T +KA+ L GVS AS +L+ G + ++ A R Q R Sbjct: 210 RYGIIGTSPALLKAITELEGVSHASSSVLLCGAAGTGKELFARALHMASPRRAQPFVR 267 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.316 0.129 0.357 Lambda K H 0.267 0.0399 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,336,707,660 Number of Sequences: 14124377 Number of extensions: 45127493 Number of successful extensions: 114691 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 114686 Number of HSP's gapped (non-prelim): 15 length of query: 171 length of database: 4,842,793,630 effective HSP length: 129 effective length of query: 42 effective length of database: 3,020,748,997 effective search space: 126871457874 effective search space used: 126871457874 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 76 (33.9 bits)