BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781205|ref|YP_003065618.1| hypothetical protein
CLIBASIA_05560 [Candidatus Liberibacter asiaticus str. psy62]
         (171 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254781205|ref|YP_003065618.1| hypothetical protein CLIBASIA_05560 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040882|gb|ACT57678.1| hypothetical protein CLIBASIA_05560 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 171

 Score =  329 bits (842), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 171/171 (100%), Positives = 171/171 (100%)

Query: 1   MSIGMDDLLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDR 60
           MSIGMDDLLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDR
Sbjct: 1   MSIGMDDLLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDR 60

Query: 61  EDQARREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQTVARFAK 120
           EDQARREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQTVARFAK
Sbjct: 61  EDQARREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQTVARFAK 120

Query: 121 EAGWHRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRYNVKGKDAS 171
           EAGWHRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRYNVKGKDAS
Sbjct: 121 EAGWHRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRYNVKGKDAS 171


>gi|317120671|gb|ADV02494.1| hypothetical protein SC1_gp050 [Liberibacter phage SC1]
 gi|317120815|gb|ADV02636.1| hypothetical protein SC1_gp050 [Candidatus Liberibacter asiaticus]
          Length = 167

 Score =  321 bits (822), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 167/167 (100%), Positives = 167/167 (100%)

Query: 5   MDDLLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDREDQA 64
           MDDLLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDREDQA
Sbjct: 1   MDDLLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDREDQA 60

Query: 65  RREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQTVARFAKEAGW 124
           RREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQTVARFAKEAGW
Sbjct: 61  RREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQTVARFAKEAGW 120

Query: 125 HRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRYNVKGKDAS 171
           HRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRYNVKGKDAS
Sbjct: 121 HRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRYNVKGKDAS 167


>gi|315121930|ref|YP_004062419.1| hypothetical protein CKC_00900 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|315122892|ref|YP_004063381.1| hypothetical protein CKC_05740 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495332|gb|ADR51931.1| hypothetical protein CKC_00900 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496294|gb|ADR52893.1| hypothetical protein CKC_05740 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 148

 Score = 90.2 bits (222), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 42/104 (40%), Positives = 70/104 (67%)

Query: 25  ISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDREDQARREGIMDTGVFRMKAVLSGV 84
           + S +++  S+ + + YR+ LAEEN+ RAD+L+ +R ++ R+EG++D G+F+MKA +SG+
Sbjct: 18  VVSDMSTATSTSKSNRYRASLAEENSRRADILHSERAERLRKEGLLDAGLFQMKAEMSGL 77

Query: 85  SGASLDLLVGQNTRNAYKGINTARTAREQTVARFAKEAGWHRAN 128
           SG S DL +GQ   +  + +  A++ R  TV RF KE  W + N
Sbjct: 78  SGISADLWIGQRYADTEREVEKAQSTRFSTVQRFLKEQQWLKQN 121


>gi|315122425|ref|YP_004062914.1| hypothetical protein CKC_03385 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495827|gb|ADR52426.1| hypothetical protein CKC_03385 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 83

 Score = 61.7 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/51 (56%), Positives = 41/51 (80%)

Query: 41 YRSLLAEENALRADVLYLDREDQARREGIMDTGVFRMKAVLSGVSGASLDL 91
          YRS LAEEN  RA  L+L+R ++A+REGI++ G+FRMK+ +SG+SG S D+
Sbjct: 33 YRSSLAEENVKRAGFLHLERMERAKREGILEAGLFRMKSEMSGLSGVSADI 83


>gi|296418189|ref|XP_002838724.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634685|emb|CAZ82915.1| unnamed protein product [Tuber melanosporum]
          Length = 768

 Score = 40.5 bits (93), Expect = 0.081,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 13/93 (13%)

Query: 32  HRSSIRDHEYRSLLAEENALRADVLYLDREDQARREGIMDTGVFRMKAVLSGVSGASLDL 91
           HR  +RD  +R+++      R D+ Y DRE+ +   G + + +      LSG+SG +L  
Sbjct: 619 HR--VRDRAFRTIM------RQDIAYFDREENS--TGALTSFLSTETTHLSGMSGVTLGT 668

Query: 92  LVGQNTRNAYK---GINTARTAREQTVARFAKE 121
           L+ + ++ AY+   G     TA  +TVA   +E
Sbjct: 669 LLIRRSKKAYEKSAGFACEATAAIRTVASLTRE 701


>gi|317120713|gb|ADV02535.1| hypothetical protein SC2_gp065 [Liberibacter phage SC2]
 gi|317120774|gb|ADV02595.1| hypothetical protein SC2_gp065 [Candidatus Liberibacter asiaticus]
          Length = 118

 Score = 40.5 bits (93), Expect = 0.091,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 46/99 (46%)

Query: 8   LLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDREDQARRE 67
            L G S+ S      L   + ++  ++ I   E R  LA++NA  AD+  LD+  Q R+E
Sbjct: 8   FLTGASVLSRFTKGILDYQADVSQAQAQIETDEQRKKLAQDNAHLADLETLDQISQKRKE 67

Query: 68  GIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINT 106
            +  +   R +    G+S  + +L +GQ      + I T
Sbjct: 68  HVYLSSKMRSQMSARGLSPVTQELWLGQTLAEMEREIQT 106


>gi|330990550|ref|ZP_08314508.1| Nif-specific regulatory protein [Gluconacetobacter sp. SXCC-1]
 gi|329762453|gb|EGG78939.1| Nif-specific regulatory protein [Gluconacetobacter sp. SXCC-1]
          Length = 524

 Score = 35.9 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 20/118 (16%)

Query: 6   DDLLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDREDQAR 65
           DD++  L + S L+G  +++  T+  H  ++  HE+  LL  ENAL         E+   
Sbjct: 164 DDIMI-LQIISTLIGQLMKLGDTVEEHTRAL--HEHNQLL--ENAL---------ENATM 209

Query: 66  REGIMDTGVFRMKAV--LSGVSGASLDLLV----GQNTRNAYKGINTARTAREQTVAR 117
           R GI+ T    +KA+  L GVS AS  +L+    G       + ++ A   R Q   R
Sbjct: 210 RYGIIGTSPALLKAITELEGVSHASSSVLLCGAAGTGKELFARALHMASPRRAQPFVR 267


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.316    0.129    0.357 

Lambda     K      H
   0.267   0.0399    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,336,707,660
Number of Sequences: 14124377
Number of extensions: 45127493
Number of successful extensions: 114691
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 114686
Number of HSP's gapped (non-prelim): 15
length of query: 171
length of database: 4,842,793,630
effective HSP length: 129
effective length of query: 42
effective length of database: 3,020,748,997
effective search space: 126871457874
effective search space used: 126871457874
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 76 (33.9 bits)