RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781205|ref|YP_003065618.1| hypothetical protein
CLIBASIA_05560 [Candidatus Liberibacter asiaticus str. psy62]
         (171 letters)



>gnl|CDD|147573 pfam05461, ApoL, Apolipoprotein L.  Apo L belongs to the high
           density lipoprotein family that plays a central role in
           cholesterol transport. The cholesterol content of
           membranes is important in cellular processes such as
           modulating gene transcription and signal transduction
           both in the adult brain and during neurodevelopment.
           There are six apo L genes located in close proximity to
           each other on chromosome 22q12 in humans. 22q12 is a
           confirmed high-susceptibility locus for schizophrenia
           and close to the region associated with velocardiofacial
           syndrome that includes symptoms of schizophrenia.
          Length = 313

 Score = 26.9 bits (60), Expect = 3.0
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 11  GLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLD 59
           G SL     G GL  ++ + S  +SI ++   S  AE  A R     +D
Sbjct: 125 GGSLVLSATGLGLGAAAAVTSISTSIVENVSNS-SAEAKASRLVPTSMD 172


>gnl|CDD|35694 KOG0473, KOG0473, KOG0473, Leucine-rich repeat protein [Function
           unknown].
          Length = 326

 Score = 26.7 bits (58), Expect = 3.6
 Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 1/79 (1%)

Query: 90  DLLVGQNTRNAYKGINTARTAREQTVARFAKEAGWHRANKEAVKNNRWASVAAIAGPPMV 149
           DL+   N  +A   +   R A          +   H    +A  + +W   A       V
Sbjct: 170 DLMATGNKPSA-AFVKNTRAAYGSVKQGKHNQKKPHVKPVQAAVSKKWKQFAKSDVGGKV 228

Query: 150 ESASSAGMKMFRRYNVKGK 168
           E  ++   K      VK +
Sbjct: 229 EKIAANISKSIVDKWVKIQ 247


>gnl|CDD|40037 KOG4840, KOG4840, KOG4840, Predicted hydrolases or acyltransferases
           (alpha/beta hydrolase superfamily) [General function
           prediction only].
          Length = 299

 Score = 25.8 bits (56), Expect = 7.1
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 29  LASHRSSIRDHEYRSLLAEENALRADVLYLDREDQARREGIM 70
            A  ++ + D EY+ L   E    +D+L   +E   R E + 
Sbjct: 136 AAILQAPVSDREYQFLEEHETKDLSDLLRAAKETIGRGEDVA 177


>gnl|CDD|145104 pfam01771, Herpes_alk_exo, Herpesvirus alkaline exonuclease.  This
           family includes various alkaline exonucleases from
           members of the herpesviridae. Alkaline exonuclease
           appears to have an important role in the replication of
           herpes simplex virus.
          Length = 458

 Score = 25.4 bits (56), Expect = 9.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 82  SGVSGASLDLLVG 94
           +G+ GASLD+ V 
Sbjct: 189 TGIFGASLDMCVN 201


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.316    0.129    0.357 

Gapped
Lambda     K      H
   0.267   0.0696    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,829,395
Number of extensions: 83792
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 7
Length of query: 171
Length of database: 6,263,737
Length adjustment: 87
Effective length of query: 84
Effective length of database: 4,383,754
Effective search space: 368235336
Effective search space used: 368235336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.6 bits)