RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781205|ref|YP_003065618.1| hypothetical protein
CLIBASIA_05560 [Candidatus Liberibacter asiaticus str. psy62]
         (171 letters)



>gnl|CDD|169558 PRK08719, PRK08719, ribonuclease H; Reviewed.
          Length = 147

 Score = 27.5 bits (61), Expect = 1.6
 Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 120 KEAGWHRANKEAVKNNR-WASVAAIAGPPMVE---SASSAGMKMFRRYNVKGKDAS 171
           K+ GW +++K+ V N   W  V  +     VE     + +G++     ++  + A+
Sbjct: 90  KQKGWRKSDKKPVANRDLWQQVDELRARKYVEVEKVTAHSGIEGNEAADMLAQAAA 145


>gnl|CDD|183321 PRK11809, putA, trifunctional transcriptional regulator/proline
           dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
           Reviewed.
          Length = 1318

 Score = 26.9 bits (60), Expect = 3.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 113 QTVARFAKEAGWHRANKEAV 132
           Q+V R A  A + R   EAV
Sbjct: 88  QSVLRAAITAAYRRPETEAV 107


>gnl|CDD|177394 PHA02562, 46, endonuclease subunit; Provisional.
          Length = 562

 Score = 26.9 bits (60), Expect = 3.2
 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 61  EDQARREGIMDTGVFRMKAVLSGVSGASLDLLV----GQNTRNAYKGINTARTAREQTVA 116
           E+ AR++   D  V   K + + +   + +LL      ++   A   +NTA    +  + 
Sbjct: 213 ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIE 272

Query: 117 RFAKEAGWHRANKE 130
           +F K    +     
Sbjct: 273 QFQKVIKMYEKGGV 286


>gnl|CDD|184554 PRK14179, PRK14179, bifunctional 5,10-methylene-tetrahydrofolate
           dehydrogenase/ 5,10-methylene-tetrahydrofolate
           cyclohydrolase; Provisional.
          Length = 284

 Score = 26.6 bits (59), Expect = 3.7
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 146 PPMVESASSAGMKMFRRYNV--KGKDA 170
           P M+    +  M+MFR YNV  +GK A
Sbjct: 135 PVMIPCTPAGIMEMFREYNVELEGKHA 161


>gnl|CDD|152197 pfam11761, CbiG_mid, Cobalamin biosynthesis central region.
           Members of this family are involved in cobalamin
           synthesis. The Synechocystis sp. PCC 6803 precorrin
           methylase has been designated cbiH but in fact
           represents a fusion between cbiH and cbiG. As other
           multi-functional proteins involved in cobalamin
           biosynthesis catalyse adjacent steps in the pathway,
           including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is
           therefore possible that CbiG catalyses a reaction step
           adjacent to CbiH. In the anaerobic pathway such a step
           could be the formation of a gamma lactone, which is
           thought to help to mediate the anaerobic ring
           contraction process.
          Length = 80

 Score = 26.1 bits (58), Expect = 4.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 118 FAKEAGWHRANKEAVK 133
            AKE GW  A+ E VK
Sbjct: 7   LAKENGWRIADPEDVK 22


>gnl|CDD|179415 PRK02362, PRK02362, ski2-like helicase; Provisional.
          Length = 737

 Score = 25.7 bits (57), Expect = 6.3
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 42  RSLLAEENALRADVLYLDREDQAR-REGIMD 71
           RS LA E ALR  VL       AR R+G+++
Sbjct: 416 RSKLATEPALRTHVLSTIASGFARTRDGLLE 446


>gnl|CDD|148573 pfam07037, DUF1323, Putative transcription regulator (DUF1323).
           This family consists of several hypothetical
           Enterobacterial proteins of around 120 residues in
           length. This family appears to have an HTH domain and is
           therefore likely to act as a transcriptional regulator.
          Length = 122

 Score = 25.5 bits (56), Expect = 7.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 113 QTVARFAKEAGWHRANKEAVKNNR 136
           QT+ R+ ++ GW  + K  VK  +
Sbjct: 15  QTINRWVRKEGWKTSPKPGVKGGK 38


>gnl|CDD|163225 TIGR03348, VI_IcmF, type VI secretion protein IcmF.  Members of
           this protein family are IcmF homologs and tend to be
           associated with type VI secretion systems.
          Length = 1169

 Score = 25.4 bits (56), Expect = 8.6
 Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 9/81 (11%)

Query: 86  GASLDLLVGQNTRNAYKGINTARTAREQTVARFAK---------EAGWHRANKEAVKNNR 136
           G  +D L+G   R           AR +  + F K         EAG    N+ A +  R
Sbjct: 369 GTPIDRLLGALARGFGLSPGPPAAARGEGRSYFLKDLFKEVIFPEAGLAGLNRRAERRRR 428

Query: 137 WASVAAIAGPPMVESASSAGM 157
           W    A A   +         
Sbjct: 429 WLRRGAYAAAALAALGLLGLW 449


>gnl|CDD|184731 PRK14536, cysS, cysteinyl-tRNA synthetase; Provisional.
          Length = 490

 Score = 24.9 bits (54), Expect = 9.9
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 100 AYKGINTARTAREQTVARFAKEAGWHRANKEAVKNNRWASVAAIAGPPMVESASSAGMKM 159
           +++ + TA+ AR   V R A+     RA   +V+     ++A  A   + ES +S    +
Sbjct: 319 SWEALKTAKAARRSLVRRVARVVDAARATTGSVR----GTLAECAAERVAESRASESELL 374

Query: 160 FRRY 163
              +
Sbjct: 375 LTDF 378


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.316    0.129    0.357 

Gapped
Lambda     K      H
   0.267   0.0821    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,689,679
Number of extensions: 160936
Number of successful extensions: 345
Number of sequences better than 10.0: 1
Number of HSP's gapped: 345
Number of HSP's successfully gapped: 22
Length of query: 171
Length of database: 5,994,473
Length adjustment: 87
Effective length of query: 84
Effective length of database: 4,114,577
Effective search space: 345624468
Effective search space used: 345624468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.4 bits)