RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781205|ref|YP_003065618.1| hypothetical protein CLIBASIA_05560 [Candidatus Liberibacter asiaticus str. psy62] (171 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 35.7 bits (82), Expect = 0.005 Identities = 30/197 (15%), Positives = 51/197 (25%), Gaps = 58/197 (29%) Query: 12 LSLAS--PLV---GA---GLRISSTLASHRSSIRDHEYRSL------LAEENALRADV-L 56 + S PL G+ L + + S +++ + L A ++ L Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60 Query: 57 Y----------LDREDQARREGIMDTGV--FRMKAVLSGVS----GASLDLLVGQNTRNA 100 ++ + + +++ + F L G A L Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE-NCYLEGNDIHALAAKLLQENDTTLVKT 119 Query: 101 YKGINTARTAREQTVARFAKEAGWHR-ANKEAVKNNRWASVAAIAG-------------- 145 + I TAR F K A AV A + AI G Sbjct: 120 KELIKNYITARIMAKRPFDK---KSNSALFRAVGEGN-AQLVAIFGGQGNTDDYFEELRD 175 Query: 146 -----PPMVES--ASSA 155 +V SA Sbjct: 176 LYQTYHVLVGDLIKFSA 192 Score = 30.3 bits (68), Expect = 0.24 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 37/109 (33%) Query: 27 STLASHRSSIRDHEYRSLLAEENALRADVLYLDREDQARREGIMDTGVFRMKAVLSGVSG 86 +T A H EY +L A ADV+ + E +++ +R G Sbjct: 1757 ATFAGHSLG----EYAAL-----ASLADVMSI--------ESLVEVVFYR---------G 1790 Query: 87 ASLDLLVGQNT--RNAYK--GINTARTAR-------EQTVARFAKEAGW 124 ++ + V ++ R+ Y IN R A + V R K GW Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGW 1839 Score = 29.5 bits (66), Expect = 0.35 Identities = 31/176 (17%), Positives = 52/176 (29%), Gaps = 59/176 (33%) Query: 5 MDDLLYGLSL----ASPLVGAGLRISSTLASHRSSIRDHEYR-----SL-------LAEE 48 + L L A + GL I L + S+ D +Y S LA Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWL-ENPSNTPDKDYLLSIPISCPLIGVIQLAHY 249 Query: 49 NALRADVLYLDREDQARREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINTAR 108 + A +L G G R + L G +G S Q G+ TA Sbjct: 250 -VVTAKLL-----------G-FTPGELR--SYLKGATGHS------Q-------GLVTA- 280 Query: 109 TAREQTVARFAKEAGWHRANKEAVK--------NNRWASVAAIAGPPMVESASSAG 156 A +A + + ++A+ ++ P ++E + Sbjct: 281 VA----IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP-PSILEDSLENN 331 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 27.2 bits (59), Expect = 2.0 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 6/58 (10%) Query: 95 QNTRNAYKGINTARTAREQTVARFAKE--AGWHRANKEAVK----NNRWASVAAIAGP 146 + R + ++ A EQ AK+ W++ E V+ NNR A A P Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQP 149 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.316 0.129 0.357 Gapped Lambda K H 0.267 0.0450 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,317,822 Number of extensions: 52358 Number of successful extensions: 105 Number of sequences better than 10.0: 1 Number of HSP's gapped: 105 Number of HSP's successfully gapped: 8 Length of query: 171 Length of database: 5,693,230 Length adjustment: 86 Effective length of query: 85 Effective length of database: 3,608,246 Effective search space: 306700910 Effective search space used: 306700910 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 53 (24.9 bits)