RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781205|ref|YP_003065618.1| hypothetical protein
CLIBASIA_05560 [Candidatus Liberibacter asiaticus str. psy62]
         (171 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 35.7 bits (82), Expect = 0.005
 Identities = 30/197 (15%), Positives = 51/197 (25%), Gaps = 58/197 (29%)

Query: 12  LSLAS--PLV---GA---GLRISSTLASHRSSIRDHEYRSL------LAEENALRADV-L 56
           +   S  PL    G+    L + +      S +++   + L       A ++       L
Sbjct: 1   MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60

Query: 57  Y----------LDREDQARREGIMDTGV--FRMKAVLSGVS----GASLDLLVGQNTRNA 100
                      ++     + + +++  +  F     L G       A L           
Sbjct: 61  VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE-NCYLEGNDIHALAAKLLQENDTTLVKT 119

Query: 101 YKGINTARTAREQTVARFAKEAGWHR-ANKEAVKNNRWASVAAIAG-------------- 145
            + I    TAR      F K       A   AV     A + AI G              
Sbjct: 120 KELIKNYITARIMAKRPFDK---KSNSALFRAVGEGN-AQLVAIFGGQGNTDDYFEELRD 175

Query: 146 -----PPMVES--ASSA 155
                  +V      SA
Sbjct: 176 LYQTYHVLVGDLIKFSA 192



 Score = 30.3 bits (68), Expect = 0.24
 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 37/109 (33%)

Query: 27   STLASHRSSIRDHEYRSLLAEENALRADVLYLDREDQARREGIMDTGVFRMKAVLSGVSG 86
            +T A H       EY +L     A  ADV+ +        E +++   +R         G
Sbjct: 1757 ATFAGHSLG----EYAAL-----ASLADVMSI--------ESLVEVVFYR---------G 1790

Query: 87   ASLDLLVGQNT--RNAYK--GINTARTAR-------EQTVARFAKEAGW 124
             ++ + V ++   R+ Y    IN  R A        +  V R  K  GW
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGW 1839



 Score = 29.5 bits (66), Expect = 0.35
 Identities = 31/176 (17%), Positives = 52/176 (29%), Gaps = 59/176 (33%)

Query: 5   MDDLLYGLSL----ASPLVGAGLRISSTLASHRSSIRDHEYR-----SL-------LAEE 48
             + L  L      A  +   GL I   L  + S+  D +Y      S        LA  
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWL-ENPSNTPDKDYLLSIPISCPLIGVIQLAHY 249

Query: 49  NALRADVLYLDREDQARREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINTAR 108
             + A +L           G    G  R  + L G +G S      Q       G+ TA 
Sbjct: 250 -VVTAKLL-----------G-FTPGELR--SYLKGATGHS------Q-------GLVTA- 280

Query: 109 TAREQTVARFAKEAGWHRANKEAVK--------NNRWASVAAIAGPPMVESASSAG 156
            A    +A       +  + ++A+                 ++  P ++E +    
Sbjct: 281 VA----IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP-PSILEDSLENN 331


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 27.2 bits (59), Expect = 2.0
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 6/58 (10%)

Query: 95  QNTRNAYKGINTARTAREQTVARFAKE--AGWHRANKEAVK----NNRWASVAAIAGP 146
           +  R   + ++ A    EQ     AK+    W++   E V+    NNR A  A    P
Sbjct: 92  EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQP 149


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.316    0.129    0.357 

Gapped
Lambda     K      H
   0.267   0.0450    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,317,822
Number of extensions: 52358
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 8
Length of query: 171
Length of database: 5,693,230
Length adjustment: 86
Effective length of query: 85
Effective length of database: 3,608,246
Effective search space: 306700910
Effective search space used: 306700910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.9 bits)