RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781205|ref|YP_003065618.1| hypothetical protein
CLIBASIA_05560 [Candidatus Liberibacter asiaticus str. psy62]
         (171 letters)



>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 293

 Score = 25.1 bits (53), Expect = 3.4
 Identities = 7/49 (14%), Positives = 19/49 (38%)

Query: 104 INTARTAREQTVARFAKEAGWHRANKEAVKNNRWASVAAIAGPPMVESA 152
           +NT +T  +  V  F ++   ++    ++ + R          P++   
Sbjct: 8   VNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPEL 56


>d2pofa1 d.13.1.4 (A:31-250) CDP-diacylglycerol pyrophosphatase CDH
           {Escherichia coli [TaxId: 562]}
          Length = 220

 Score = 24.4 bits (53), Expect = 5.7
 Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 7/73 (9%)

Query: 25  ISSTLASHRSSIRDHEYRSLLAEENALRADVLY--LDREDQARREGIMDTGVFRMKAVLS 82
           ISS        +R HEY +    E+ L     +  L  E    RE +   G+      + 
Sbjct: 131 ISSRWLPLPGGLRGHEYLARRVTESELVQRSPFMMLAEEVPEAREHMGSYGL-----AMV 185

Query: 83  GVSGASLDLLVGQ 95
             S  S  LL  Q
Sbjct: 186 RQSDNSFVLLATQ 198


>d3eeqa2 c.152.1.1 (A:8-214) Cobalamin biosynthesis protein G, CbiG
           {Sulfolobus solfataricus [TaxId: 2287]}
          Length = 207

 Score = 24.1 bits (52), Expect = 7.7
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 79  AVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQ-TVARFAKEAGWHRANKEAVK 133
            +L G  GA+          N+   I TA   + + ++ R A        N E + 
Sbjct: 95  PLLGGHWGANDIARELSVILNSTPIITTAAEIKGKLSIERIANILIAKIINPENIV 150


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.129    0.357 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 560,296
Number of extensions: 21781
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 4
Length of query: 171
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,322,926
Effective search space: 121709192
Effective search space used: 121709192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.3 bits)