Query         gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 1246
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 23:35:32 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781206.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2bap_D Diaphanous protein hom  63.6       5 0.00015   18.1   2.4   23  405-427     2-24  (56)
  2 >2znl_A Polymerase acidic prot  48.4      12 0.00036   15.3   2.3   42  135-179    17-60  (65)
  3 >3ho1_A Argonaute; argonaute,   40.7      11 0.00031   15.7   1.0   21  313-336    73-93  (96)
  4 >2beq_D E2 glycoprotein; viral  29.8      25 0.00074   13.0   2.1   29  871-899    14-42  (48)
  5 >1tuz_A Diacylglycerol kinase   27.4      28 0.00081   12.7   1.8   19  602-621     3-21  (118)
  6 >3lov_A Protoporphyrinogen oxi  26.1      29 0.00086   12.6   1.4   23  188-210    11-34  (58)
  7 >1j2j_B ADP-ribosylation facto  25.8      29 0.00087   12.5   1.6   32  720-758    11-42  (45)
  8 >1epu_A S-SEC1; parallel beta-  25.5      24  0.0007   13.2   0.8   21  333-353   191-211 (223)
  9 >1zzh_A Cytochrome C peroxidas  24.8      13  0.0004   15.0  -0.6   14  832-845    44-57  (80)
 10 >1vlu_A Gamma-glutamyl phospha  21.7      35   0.001   12.0   4.1   49  579-627     5-53  (293)
 11 >3kdq_A Uncharacterized conser  21.7      35   0.001   12.0   5.6  123  917-1055   11-140 (154)
 12 3C98_A Revised Structure Of Th  21.3      36  0.0011   11.9   2.1   22 1198-1219  572-593 (606)
 13 >3bm3_A PSPGI restriction endo  20.8      36  0.0011   11.8   3.2   62   87-153    24-88  (126)
 14 >1dxx_A Dystrophin; muscular d  20.0      38  0.0011   11.7   1.5   70  826-895     4-73  (120)

No 1  
>>2bap_D Diaphanous protein homolog 1; armadillo repeats, all helical, signaling protein; 3.30A {Mus musculus} (D:)
Probab=63.63  E-value=5  Score=18.07  Aligned_cols=23  Identities=43%  Similarity=0.658  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88888887664776456888765
Q gi|254781206|r  405 RREQEAKEKADREKADKEAKEKA  427 (1246)
Q Consensus       405 rreqeakekadrekadkeakeka  427 (1246)
                      ||-++|+|++.||+..+..+.++
T Consensus         2 rR~~eA~Eka~re~~erq~~kk~   24 (56)
T 2bap_D            2 RRAKLAKEKAEKERLEKQQKREQ   24 (56)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             31788899899999999987625


No 2  
>>2znl_A Polymerase acidic protein; PA, PB1, subunit interaction, phosphoprotein, nucleotide-binding, nucleotidyltransferase; 2.30A {Influenza a virus} PDB: 3cm8_A (A:414-478)
Probab=48.44  E-value=12  Score=15.31  Aligned_cols=42  Identities=38%  Similarity=0.484  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHH
Q ss_conf             759999888754886024588899988876135378--899999988
Q gi|254781206|r  135 INKQVRDALESAGFDLESTQENIRKVESALINNNMK--DAFRFLELA  179 (1246)
Q Consensus       135 inkqvrdalesagfdlestqenirkvesalinnnmk--dafrflela  179 (1246)
                      |-...||.+++-+|||+..-|.|   |-.||||-|-  .|.+|-++-
T Consensus        17 ~~qalrdn~~p~~f~leGlye~I---EECliN~Pwvl~~A~wfN~~l   60 (65)
T 2znl_A           17 IVQALRDNLEPGTFDLGGLYEAI---EECLINDPWVLLNASWFNSFL   60 (65)
T ss_dssp             HHHHHHHCSSCCCCCCCSHHHHH---HTTCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCHHHHHHH---HHHHCCCHHHHHHHHHHHHHH
T ss_conf             99998854588765815678889---999827869999998999999


No 3  
>>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, plasmid; 2.60A {Thermus thermophilus HB27} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A (A:13-20,A:125-177,A:274-308)
Probab=40.72  E-value=11  Score=15.73  Aligned_cols=21  Identities=57%  Similarity=0.906  Sum_probs=13.8

Q ss_pred             HHHHHCCHHHHHHHHHHHCCCCCC
Q ss_conf             123200008887643320125564
Q gi|254781206|r  313 EWARTSTNIASWIGRITRTEGLGG  336 (1246)
Q Consensus       313 ewartstniaswigritrteglgg  336 (1246)
                      |-.|....|||||||-   -|||.
T Consensus        73 errrrtreiaswigrr---lglgt   93 (96)
T 3ho1_A           73 ERRRRTREIASWIGRR---LGLGT   93 (96)
T ss_dssp             HHHHHHHHHHHHHHHT---TCSCC
T ss_pred             CCCCHHHHHHHHHHHC---CCCCC
T ss_conf             8666999999999764---55358


No 4  
>>2beq_D E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} (D:)
Probab=29.80  E-value=25  Score=12.99  Aligned_cols=29  Identities=31%  Similarity=0.524  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             12356887520330877430118999998
Q gi|254781206|r  871 HLNAEVERLSGLAQQPSDSTADLKELQTQ  899 (1246)
Q Consensus       871 hlnaeverlsglaqqpsdstadlkelqtq  899 (1246)
                      .+..|..|+.+..||-.+|--|||+|.+-
T Consensus        14 di~~Ei~~iqevIk~LN~S~IdLk~l~~y   42 (48)
T 2beq_D           14 NIQKEIDRLNEVAKNLNESLIDLQELGKY   42 (48)
T ss_dssp             CCHHHHHHHHHHHTTGGGGEECHHHHHHH
T ss_pred             EHHHHHHHHHHHHHHHHHHHHCHHHHCHH
T ss_conf             66989999999999988876079984536


No 5  
>>1tuz_A Diacylglycerol kinase alpha; transferase, HR532, nesgc, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} (A:)
Probab=27.43  E-value=28  Score=12.71  Aligned_cols=19  Identities=42%  Similarity=0.655  Sum_probs=15.8

Q ss_pred             HHHCCCCHHHHHHHHHHHHH
Q ss_conf             64405897899999999998
Q gi|254781206|r  602 KEWKSLSPDEIKQRFQKYAK  621 (1246)
Q Consensus       602 kewkslspdeikqrfqkyak  621 (1246)
                      ++|-.|||.|..| .|||+.
T Consensus         3 ~~~~~lsP~eF~q-lqky~e   21 (118)
T 1tuz_A            3 KERGLISPSDFAQ-LQKYME   21 (118)
T ss_dssp             CCCSCSCHHHHHH-HHHHHH
T ss_pred             CCCCCCCHHHHHH-HHHHCC
T ss_conf             3358889899999-998677


No 6  
>>3lov_A Protoporphyrinogen oxidase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} (A:60-87,A:218-247)
Probab=26.14  E-value=29  Score=12.55  Aligned_cols=23  Identities=52%  Similarity=0.765  Sum_probs=16.5

Q ss_pred             HHHHHHHHCCCCCCC-CCCCCHHH
Q ss_conf             445665410100023-68870377
Q gi|254781206|r  188 SHIIEAIDVGTKLKE-NTPPTTFT  210 (1246)
Q Consensus       188 shiieaidvgtklke-ntppttft  210 (1246)
                      ...||||..|.||-. |||.||..
T Consensus        11 tdlieaiglgeklvrnntpqttik   34 (58)
T 3lov_A           11 TDLIEAIGLGEKLVRNNTPQTTIK   34 (58)
T ss_dssp             HHHHHHTTCGGGEEECCC------
T ss_pred             HHHHHHCCCCCCEECCCCHHHHHC
T ss_conf             999997499642012578122211


No 7  
>>1j2j_B ADP-ribosylation factor binding protein GGA1, ADP-ribosylation factor 1; protein transport; HET: GTP; 1.60A {Homo sapiens} (B:)
Probab=25.78  E-value=29  Score=12.51  Aligned_cols=32  Identities=44%  Similarity=0.590  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             655887642000202337789999999888866636122
Q gi|254781206|r  720 KHSFEVLSSKHQKSVIAVNNFIKEITHHTRRLVKEDPKR  758 (1246)
Q Consensus       720 khsfevlsskhqksviavnnfikeithhtrrlvkedpkr  758 (1246)
                      |.--..|.|+|....-+.|..||.       +|+||-+|
T Consensus        11 klL~~LLkS~~PeDLqaANrLIK~-------mVkedq~r   42 (45)
T 1j2j_B           11 KMLARLLKSSHPEDLRAANKLIKE-------MVQEDQKR   42 (45)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHH-------HHHHHHSC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH-------HHHHHHHH
T ss_conf             999999825987899999999999-------99889988


No 8  
>>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical bundle, endocytosis/exocytosis complex; 2.40A {Loligo pealei} (A:136-239,A:457-575)
Probab=25.55  E-value=24  Score=13.17  Aligned_cols=21  Identities=19%  Similarity=0.554  Sum_probs=17.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHC
Q ss_conf             556433999999998887410
Q gi|254781206|r  333 GLGGVTYDQIKQLRDLASKVK  353 (1246)
Q Consensus       333 glggvtydqikqlrdlaskvk  353 (1246)
                      =+|||||..++.++.|..+.+
T Consensus       191 vvGGvTy~E~r~~~els~~~~  211 (223)
T 1epu_A          191 VVGGISYSEXRSAYEVTQTAK  211 (223)
T ss_dssp             EETCBCHHHHHHHHHHHTSSC
T ss_pred             EECCCCHHHHHHHHHHHHHHC
T ss_conf             989958999999999998508


No 9  
>>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC; 2.70A {Rhodobacter capsulatus} (A:23-49,A:116-168)
Probab=24.79  E-value=13  Score=14.96  Aligned_cols=14  Identities=14%  Similarity=0.259  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHHHCC
Q ss_conf             03588899888311
Q gi|254781206|r  832 DSSYSKLFEIFYGD  845 (1246)
Q Consensus       832 dssysklfeifygd  845 (1246)
                      +..|..+|+--||+
T Consensus        44 ~p~Y~~lF~~AFgd   57 (80)
T 1zzh_A           44 MPGYVEAFAKAFPG   57 (80)
T ss_dssp             CHHHHHHHHHHSTT
T ss_pred             CCHHHHHHHHHCCC
T ss_conf             73013566651267


No 10 
>>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural genomics, JCSG, protein structure initiative, PSI; 2.29A {Saccharomyces cerevisiae} (A:1-238,A:414-468)
Probab=21.75  E-value=35  Score=11.98  Aligned_cols=49  Identities=10%  Similarity=0.051  Sum_probs=39.3

Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999876311245666753221564405897899999999998875135
Q gi|254781206|r  579 VAEIIQQSRMQSEDLQEKAWDSYKEWKSLSPDEIKQRFQKYAKVFYRSY  627 (1246)
Q Consensus       579 vaeiiqqsrmqsedlqekawdsykewkslspdeikqrfqkyakvfyrsy  627 (1246)
                      ++++-..+.++-+.+-++|...++.|..+++.+-.+.+.+.|..+-...
T Consensus         5 i~~v~~~~~~~i~~~~~~Ar~A~~~~~~~s~~~R~~~L~~~a~~L~~~~   53 (293)
T 1vlu_A            5 KIHHHHHHXSSSQQIAKNARKAGNILKTISNEGRSDILYKIHDALKANA   53 (293)
T ss_dssp             -------CCCHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCH
T ss_conf             2330110035999999999999999986999999999999999999789


No 11 
>>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae} (A:)
Probab=21.67  E-value=35  Score=11.96  Aligned_cols=123  Identities=20%  Similarity=0.226  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf             9999889999999998620001--38788701789999999999999976664266420000366776565301577654
Q gi|254781206|r  917 FIRSEFEREIKELKSVIEADAK--ENPNPNKNQKKLQKTREKLVAQLSSRLKELNIDNAYGLWNEYKEDFKASFEYPLGT  994 (1246)
Q Consensus       917 firsefereikelksvieadak--enpnpnknqkklqktreklvaqlssrlkelnidnayglwneykedfkasfeyplgt  994 (1246)
                      -+|+...+.|.+|++-|...++  |+-.|..+...|-+.-+.+..+|..-....|..|+--           .|+.+.  
T Consensus        11 ~lRadlqkri~qL~~ri~~n~~vQEGe~P~edp~~Ll~e~~~~~~~L~~Li~~IN~TN~~~-----------~~~~~~--   77 (154)
T 3kdq_A           11 AQRVEAQRRYSELNQLLLDVAKVQEGDQPAENPHEILTELEELTTRINDLVRRINRTNSVT-----------EFSEGX--   77 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEEETTCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-----------EEETTE--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----------CCCCCC--
T ss_conf             9999999999999999997425635999999999999999999999999999999955763-----------267998--


Q ss_pred             CCHHHHHHHHHHHHHCCH-HHHHHHHHHCCCCHHEECC----HHHCCHHHHHCCCCHHHHHHHHHH
Q ss_conf             535788777545430305-5688998860898110401----322687675305726799999987
Q gi|254781206|r  995 YEPAILGAMKDMDRLHPI-YSVSKTIQKAGGDPSLMMD----YEKVEPSDVMAGLPDDLAKRFKAL 1055 (1246)
Q Consensus       995 yepailgamkdmdrlhpi-ysvsktiqkaggdpslmmd----yekvepsdvmaglpddlakrfkal 1055 (1246)
                         .+.-|+-.-|.|--- ......+..|++......-    |-.+-+-..+-.--|+++|.+.-|
T Consensus        78 ---tl~eala~rD~L~~~~~~l~~~~~~a~~~~~rys~sEIk~vs~vdv~~~qk~ad~lsk~~r~L  140 (154)
T 3kdq_A           78 ---TLADALSVRDALLKKRTLYSDLADQLTSRQDRYSRSEIKYVATXDAREIRKKADLAAKEYRQL  140 (154)
T ss_dssp             ---EHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSTTSCCEEESSCHHHHHHHHHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_conf             ---599999999999999999999998617575775600301256425999999999999999999


No 12 
>3C98_A Revised Structure Of The Munc18a-Syntaxin1 Complex {Rattus norvegicus} (A:)
Probab=21.27  E-value=36  Score=11.91  Aligned_cols=22  Identities=32%  Similarity=0.622  Sum_probs=14.8

Q ss_pred             CCCEEEEECCCCCCCHHEEEEE
Q ss_conf             6715888217787772018886
Q gi|254781206|r 1198 TGEFEVLVPSDASLNPEIIIRQ 1219 (1246)
Q Consensus      1198 tgefevlvpsdaslnpeiiirq 1219 (1246)
                      .+..+|++-++.-+||.-++.|
T Consensus       572 ~~~~~iiigsT~il~~~~fl~~  593 (606)
T 3C98_A          572 NGKWEVLIGSTHILTPQKLLDT  593 (606)
T ss_dssp             HSSCEEEEEESSEECHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHH
T ss_conf             1890899943641167999999


No 13 
>>3bm3_A PSPGI restriction endonuclease; endonuclease-DNA complex, restriction enzyme, PSPGI, base flipping, hydrolase/DNA complex; HET: DNA MSE CIT; 1.70A {Pyrococcus SP} (A:1-126)
Probab=20.78  E-value=36  Score=11.84  Aligned_cols=62  Identities=37%  Similarity=0.513  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHH---HHCCCEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             542477799998999987---6225466526631589999876401034577599998887548860245
Q gi|254781206|r   87 IEAGLKDLKEVGDTLKRL---AETGEVILSDKSDRLLCRFMDMVETEDEHKINKQVRDALESAGFDLEST  153 (1246)
Q Consensus        87 ieaglkdlkevgdtlkrl---aetgevilsdksdrllcrfmdmvetedehkinkqvrdalesagfdlest  153 (1246)
                      ||..+..| .|...|.||   .|.||||....-...|    .--.-|--....||||.|.-|||+.-|..
T Consensus        24 ieeaitel-nvdelldrlfekdesgevitpsriak~l----eekafeiykeyekqvreaylsagysrekl   88 (126)
T 3bm3_A           24 IEEAITEL-NVDELLDRLFEKDESGEVITPSRIAKXL----EEKAFEIYKEYEKQVREAYLSAGYSREKL   88 (126)
T ss_dssp             HHHHHHHH-THHHHHHTTTSBCTTSCBCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHC-CCHHHHHHHHHCCCCCCCCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             99999736-8117778775216773436778999999----98788999999999999998537743788


No 14 
>>1dxx_A Dystrophin; muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.60A {Homo sapiens} (A:1-120)
Probab=20.04  E-value=38  Score=11.73  Aligned_cols=70  Identities=11%  Similarity=0.097  Sum_probs=51.9

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             1023200358889988831123221000120231110033200111235688752033087743011899
Q gi|254781206|r  826 DVQSKFDSSYSKLFEIFYGDWTNNAIKEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTADLKE  895 (1246)
Q Consensus       826 dvqskfdssysklfeifygdwtnnaikeerywtiyaferslknqahlnaeverlsglaqqpsdstadlke  895 (1246)
                      +.--+.++.|....+--|-+|.|..+.+.....+..|...|++.--|-.-++.+++..-.-..++...+.
T Consensus         4 ~~~~~~~~~~~~~q~~~~~~Win~~L~~~~~~~i~nl~~dl~DGv~L~~L~e~l~p~~~~~~~~~~~~~~   73 (120)
T 1dxx_A            4 WEEVEDSYEREDVQKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPKEKGSTRVHA   73 (120)
T ss_dssp             -----CCCCCHHHHHHHHHHHHHHHHHHTTCCCCSCTTTTTTTSHHHHHHHHHHHSCCCCCCCCSSHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCHHHH
T ss_conf             4652327789999999999999987362489855479988235999999999976986888898648888


Done!