Query gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 1246 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 23:35:32 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781206.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2bap_D Diaphanous protein hom 63.6 5 0.00015 18.1 2.4 23 405-427 2-24 (56) 2 >2znl_A Polymerase acidic prot 48.4 12 0.00036 15.3 2.3 42 135-179 17-60 (65) 3 >3ho1_A Argonaute; argonaute, 40.7 11 0.00031 15.7 1.0 21 313-336 73-93 (96) 4 >2beq_D E2 glycoprotein; viral 29.8 25 0.00074 13.0 2.1 29 871-899 14-42 (48) 5 >1tuz_A Diacylglycerol kinase 27.4 28 0.00081 12.7 1.8 19 602-621 3-21 (118) 6 >3lov_A Protoporphyrinogen oxi 26.1 29 0.00086 12.6 1.4 23 188-210 11-34 (58) 7 >1j2j_B ADP-ribosylation facto 25.8 29 0.00087 12.5 1.6 32 720-758 11-42 (45) 8 >1epu_A S-SEC1; parallel beta- 25.5 24 0.0007 13.2 0.8 21 333-353 191-211 (223) 9 >1zzh_A Cytochrome C peroxidas 24.8 13 0.0004 15.0 -0.6 14 832-845 44-57 (80) 10 >1vlu_A Gamma-glutamyl phospha 21.7 35 0.001 12.0 4.1 49 579-627 5-53 (293) 11 >3kdq_A Uncharacterized conser 21.7 35 0.001 12.0 5.6 123 917-1055 11-140 (154) 12 3C98_A Revised Structure Of Th 21.3 36 0.0011 11.9 2.1 22 1198-1219 572-593 (606) 13 >3bm3_A PSPGI restriction endo 20.8 36 0.0011 11.8 3.2 62 87-153 24-88 (126) 14 >1dxx_A Dystrophin; muscular d 20.0 38 0.0011 11.7 1.5 70 826-895 4-73 (120) No 1 >>2bap_D Diaphanous protein homolog 1; armadillo repeats, all helical, signaling protein; 3.30A {Mus musculus} (D:) Probab=63.63 E-value=5 Score=18.07 Aligned_cols=23 Identities=43% Similarity=0.658 Sum_probs=16.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 88888887664776456888765 Q gi|254781206|r 405 RREQEAKEKADREKADKEAKEKA 427 (1246) Q Consensus 405 rreqeakekadrekadkeakeka 427 (1246) ||-++|+|++.||+..+..+.++ T Consensus 2 rR~~eA~Eka~re~~erq~~kk~ 24 (56) T 2bap_D 2 RRAKLAKEKAEKERLEKQQKREQ 24 (56) T ss_pred CHHHHHHHHHHHHHHHHHHHHHH T ss_conf 31788899899999999987625 No 2 >>2znl_A Polymerase acidic protein; PA, PB1, subunit interaction, phosphoprotein, nucleotide-binding, nucleotidyltransferase; 2.30A {Influenza a virus} PDB: 3cm8_A (A:414-478) Probab=48.44 E-value=12 Score=15.31 Aligned_cols=42 Identities=38% Similarity=0.484 Sum_probs=32.4 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHH Q ss_conf 759999888754886024588899988876135378--899999988 Q gi|254781206|r 135 INKQVRDALESAGFDLESTQENIRKVESALINNNMK--DAFRFLELA 179 (1246) Q Consensus 135 inkqvrdalesagfdlestqenirkvesalinnnmk--dafrflela 179 (1246) |-...||.+++-+|||+..-|.| |-.||||-|- .|.+|-++- T Consensus 17 ~~qalrdn~~p~~f~leGlye~I---EECliN~Pwvl~~A~wfN~~l 60 (65) T 2znl_A 17 IVQALRDNLEPGTFDLGGLYEAI---EECLINDPWVLLNASWFNSFL 60 (65) T ss_dssp HHHHHHHCSSCCCCCCCSHHHHH---HTTCSSCHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCCCCCHHHHHHH---HHHHCCCHHHHHHHHHHHHHH T ss_conf 99998854588765815678889---999827869999998999999 No 3 >>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, plasmid; 2.60A {Thermus thermophilus HB27} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A (A:13-20,A:125-177,A:274-308) Probab=40.72 E-value=11 Score=15.73 Aligned_cols=21 Identities=57% Similarity=0.906 Sum_probs=13.8 Q ss_pred HHHHHCCHHHHHHHHHHHCCCCCC Q ss_conf 123200008887643320125564 Q gi|254781206|r 313 EWARTSTNIASWIGRITRTEGLGG 336 (1246) Q Consensus 313 ewartstniaswigritrteglgg 336 (1246) |-.|....|||||||- -|||. T Consensus 73 errrrtreiaswigrr---lglgt 93 (96) T 3ho1_A 73 ERRRRTREIASWIGRR---LGLGT 93 (96) T ss_dssp HHHHHHHHHHHHHHHT---TCSCC T ss_pred CCCCHHHHHHHHHHHC---CCCCC T ss_conf 8666999999999764---55358 No 4 >>2beq_D E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} (D:) Probab=29.80 E-value=25 Score=12.99 Aligned_cols=29 Identities=31% Similarity=0.524 Sum_probs=25.0 Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 12356887520330877430118999998 Q gi|254781206|r 871 HLNAEVERLSGLAQQPSDSTADLKELQTQ 899 (1246) Q Consensus 871 hlnaeverlsglaqqpsdstadlkelqtq 899 (1246) .+..|..|+.+..||-.+|--|||+|.+- T Consensus 14 di~~Ei~~iqevIk~LN~S~IdLk~l~~y 42 (48) T 2beq_D 14 NIQKEIDRLNEVAKNLNESLIDLQELGKY 42 (48) T ss_dssp CCHHHHHHHHHHHTTGGGGEECHHHHHHH T ss_pred EHHHHHHHHHHHHHHHHHHHHCHHHHCHH T ss_conf 66989999999999988876079984536 No 5 >>1tuz_A Diacylglycerol kinase alpha; transferase, HR532, nesgc, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} (A:) Probab=27.43 E-value=28 Score=12.71 Aligned_cols=19 Identities=42% Similarity=0.655 Sum_probs=15.8 Q ss_pred HHHCCCCHHHHHHHHHHHHH Q ss_conf 64405897899999999998 Q gi|254781206|r 602 KEWKSLSPDEIKQRFQKYAK 621 (1246) Q Consensus 602 kewkslspdeikqrfqkyak 621 (1246) ++|-.|||.|..| .|||+. T Consensus 3 ~~~~~lsP~eF~q-lqky~e 21 (118) T 1tuz_A 3 KERGLISPSDFAQ-LQKYME 21 (118) T ss_dssp CCCSCSCHHHHHH-HHHHHH T ss_pred CCCCCCCHHHHHH-HHHHCC T ss_conf 3358889899999-998677 No 6 >>3lov_A Protoporphyrinogen oxidase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} (A:60-87,A:218-247) Probab=26.14 E-value=29 Score=12.55 Aligned_cols=23 Identities=52% Similarity=0.765 Sum_probs=16.5 Q ss_pred HHHHHHHHCCCCCCC-CCCCCHHH Q ss_conf 445665410100023-68870377 Q gi|254781206|r 188 SHIIEAIDVGTKLKE-NTPPTTFT 210 (1246) Q Consensus 188 shiieaidvgtklke-ntppttft 210 (1246) ...||||..|.||-. |||.||.. T Consensus 11 tdlieaiglgeklvrnntpqttik 34 (58) T 3lov_A 11 TDLIEAIGLGEKLVRNNTPQTTIK 34 (58) T ss_dssp HHHHHHTTCGGGEEECCC------ T ss_pred HHHHHHCCCCCCEECCCCHHHHHC T ss_conf 999997499642012578122211 No 7 >>1j2j_B ADP-ribosylation factor binding protein GGA1, ADP-ribosylation factor 1; protein transport; HET: GTP; 1.60A {Homo sapiens} (B:) Probab=25.78 E-value=29 Score=12.51 Aligned_cols=32 Identities=44% Similarity=0.590 Sum_probs=23.1 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 655887642000202337789999999888866636122 Q gi|254781206|r 720 KHSFEVLSSKHQKSVIAVNNFIKEITHHTRRLVKEDPKR 758 (1246) Q Consensus 720 khsfevlsskhqksviavnnfikeithhtrrlvkedpkr 758 (1246) |.--..|.|+|....-+.|..||. +|+||-+| T Consensus 11 klL~~LLkS~~PeDLqaANrLIK~-------mVkedq~r 42 (45) T 1j2j_B 11 KMLARLLKSSHPEDLRAANKLIKE-------MVQEDQKR 42 (45) T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHH-------HHHHHHSC T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH-------HHHHHHHH T ss_conf 999999825987899999999999-------99889988 No 8 >>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical bundle, endocytosis/exocytosis complex; 2.40A {Loligo pealei} (A:136-239,A:457-575) Probab=25.55 E-value=24 Score=13.17 Aligned_cols=21 Identities=19% Similarity=0.554 Sum_probs=17.3 Q ss_pred CCCCCCHHHHHHHHHHHHHHC Q ss_conf 556433999999998887410 Q gi|254781206|r 333 GLGGVTYDQIKQLRDLASKVK 353 (1246) Q Consensus 333 glggvtydqikqlrdlaskvk 353 (1246) =+|||||..++.++.|..+.+ T Consensus 191 vvGGvTy~E~r~~~els~~~~ 211 (223) T 1epu_A 191 VVGGISYSEXRSAYEVTQTAK 211 (223) T ss_dssp EETCBCHHHHHHHHHHHTSSC T ss_pred EECCCCHHHHHHHHHHHHHHC T ss_conf 989958999999999998508 No 9 >>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC; 2.70A {Rhodobacter capsulatus} (A:23-49,A:116-168) Probab=24.79 E-value=13 Score=14.96 Aligned_cols=14 Identities=14% Similarity=0.259 Sum_probs=7.4 Q ss_pred HHHHHHHHHHHHCC Q ss_conf 03588899888311 Q gi|254781206|r 832 DSSYSKLFEIFYGD 845 (1246) Q Consensus 832 dssysklfeifygd 845 (1246) +..|..+|+--||+ T Consensus 44 ~p~Y~~lF~~AFgd 57 (80) T 1zzh_A 44 MPGYVEAFAKAFPG 57 (80) T ss_dssp CHHHHHHHHHHSTT T ss_pred CCHHHHHHHHHCCC T ss_conf 73013566651267 No 10 >>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural genomics, JCSG, protein structure initiative, PSI; 2.29A {Saccharomyces cerevisiae} (A:1-238,A:414-468) Probab=21.75 E-value=35 Score=11.98 Aligned_cols=49 Identities=10% Similarity=0.051 Sum_probs=39.3 Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC Q ss_conf 9999876311245666753221564405897899999999998875135 Q gi|254781206|r 579 VAEIIQQSRMQSEDLQEKAWDSYKEWKSLSPDEIKQRFQKYAKVFYRSY 627 (1246) Q Consensus 579 vaeiiqqsrmqsedlqekawdsykewkslspdeikqrfqkyakvfyrsy 627 (1246) ++++-..+.++-+.+-++|...++.|..+++.+-.+.+.+.|..+-... T Consensus 5 i~~v~~~~~~~i~~~~~~Ar~A~~~~~~~s~~~R~~~L~~~a~~L~~~~ 53 (293) T 1vlu_A 5 KIHHHHHHXSSSQQIAKNARKAGNILKTISNEGRSDILYKIHDALKANA 53 (293) T ss_dssp -------CCCHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTH T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCH T ss_conf 2330110035999999999999999986999999999999999999789 No 11 >>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae} (A:) Probab=21.67 E-value=35 Score=11.96 Aligned_cols=123 Identities=20% Similarity=0.226 Sum_probs=75.1 Q ss_pred HHHHHHHHHHHHHHHHHHCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC Q ss_conf 9999889999999998620001--38788701789999999999999976664266420000366776565301577654 Q gi|254781206|r 917 FIRSEFEREIKELKSVIEADAK--ENPNPNKNQKKLQKTREKLVAQLSSRLKELNIDNAYGLWNEYKEDFKASFEYPLGT 994 (1246) Q Consensus 917 firsefereikelksvieadak--enpnpnknqkklqktreklvaqlssrlkelnidnayglwneykedfkasfeyplgt 994 (1246) -+|+...+.|.+|++-|...++ |+-.|..+...|-+.-+.+..+|..-....|..|+-- .|+.+. T Consensus 11 ~lRadlqkri~qL~~ri~~n~~vQEGe~P~edp~~Ll~e~~~~~~~L~~Li~~IN~TN~~~-----------~~~~~~-- 77 (154) T 3kdq_A 11 AQRVEAQRRYSELNQLLLDVAKVQEGDQPAENPHEILTELEELTTRINDLVRRINRTNSVT-----------EFSEGX-- 77 (154) T ss_dssp HHHHHHHHHHHHHHHHHHHTTEEETTCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-----------EEETTE-- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----------CCCCCC-- T ss_conf 9999999999999999997425635999999999999999999999999999999955763-----------267998-- Q ss_pred CCHHHHHHHHHHHHHCCH-HHHHHHHHHCCCCHHEECC----HHHCCHHHHHCCCCHHHHHHHHHH Q ss_conf 535788777545430305-5688998860898110401----322687675305726799999987 Q gi|254781206|r 995 YEPAILGAMKDMDRLHPI-YSVSKTIQKAGGDPSLMMD----YEKVEPSDVMAGLPDDLAKRFKAL 1055 (1246) Q Consensus 995 yepailgamkdmdrlhpi-ysvsktiqkaggdpslmmd----yekvepsdvmaglpddlakrfkal 1055 (1246) .+.-|+-.-|.|--- ......+..|++......- |-.+-+-..+-.--|+++|.+.-| T Consensus 78 ---tl~eala~rD~L~~~~~~l~~~~~~a~~~~~rys~sEIk~vs~vdv~~~qk~ad~lsk~~r~L 140 (154) T 3kdq_A 78 ---TLADALSVRDALLKKRTLYSDLADQLTSRQDRYSRSEIKYVATXDAREIRKKADLAAKEYRQL 140 (154) T ss_dssp ---EHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSTTSCCEEESSCHHHHHHHHHHHHHHHHHH T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHH T ss_conf ---599999999999999999999998617575775600301256425999999999999999999 No 12 >3C98_A Revised Structure Of The Munc18a-Syntaxin1 Complex {Rattus norvegicus} (A:) Probab=21.27 E-value=36 Score=11.91 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=14.8 Q ss_pred CCCEEEEECCCCCCCHHEEEEE Q ss_conf 6715888217787772018886 Q gi|254781206|r 1198 TGEFEVLVPSDASLNPEIIIRQ 1219 (1246) Q Consensus 1198 tgefevlvpsdaslnpeiiirq 1219 (1246) .+..+|++-++.-+||.-++.| T Consensus 572 ~~~~~iiigsT~il~~~~fl~~ 593 (606) T 3C98_A 572 NGKWEVLIGSTHILTPQKLLDT 593 (606) T ss_dssp HSSCEEEEEESSEECHHHHHHH T ss_pred CCCCEEEEECCCCCCHHHHHHH T ss_conf 1890899943641167999999 No 13 >>3bm3_A PSPGI restriction endonuclease; endonuclease-DNA complex, restriction enzyme, PSPGI, base flipping, hydrolase/DNA complex; HET: DNA MSE CIT; 1.70A {Pyrococcus SP} (A:1-126) Probab=20.78 E-value=36 Score=11.84 Aligned_cols=62 Identities=37% Similarity=0.513 Sum_probs=33.2 Q ss_pred HHHHHHHHHHHHHHHHHH---HHCCCEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 542477799998999987---6225466526631589999876401034577599998887548860245 Q gi|254781206|r 87 IEAGLKDLKEVGDTLKRL---AETGEVILSDKSDRLLCRFMDMVETEDEHKINKQVRDALESAGFDLEST 153 (1246) Q Consensus 87 ieaglkdlkevgdtlkrl---aetgevilsdksdrllcrfmdmvetedehkinkqvrdalesagfdlest 153 (1246) ||..+..| .|...|.|| .|.||||....-...| .--.-|--....||||.|.-|||+.-|.. T Consensus 24 ieeaitel-nvdelldrlfekdesgevitpsriak~l----eekafeiykeyekqvreaylsagysrekl 88 (126) T 3bm3_A 24 IEEAITEL-NVDELLDRLFEKDESGEVITPSRIAKXL----EEKAFEIYKEYEKQVREAYLSAGYSREKL 88 (126) T ss_dssp HHHHHHHH-THHHHHHTTTSBCTTSCBCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTTCCHHHH T ss_pred HHHHHHHC-CCHHHHHHHHHCCCCCCCCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCCCCHHHH T ss_conf 99999736-8117778775216773436778999999----98788999999999999998537743788 No 14 >>1dxx_A Dystrophin; muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.60A {Homo sapiens} (A:1-120) Probab=20.04 E-value=38 Score=11.73 Aligned_cols=70 Identities=11% Similarity=0.097 Sum_probs=51.9 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHH Q ss_conf 1023200358889988831123221000120231110033200111235688752033087743011899 Q gi|254781206|r 826 DVQSKFDSSYSKLFEIFYGDWTNNAIKEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTADLKE 895 (1246) Q Consensus 826 dvqskfdssysklfeifygdwtnnaikeerywtiyaferslknqahlnaeverlsglaqqpsdstadlke 895 (1246) +.--+.++.|....+--|-+|.|..+.+.....+..|...|++.--|-.-++.+++..-.-..++...+. T Consensus 4 ~~~~~~~~~~~~~q~~~~~~Win~~L~~~~~~~i~nl~~dl~DGv~L~~L~e~l~p~~~~~~~~~~~~~~ 73 (120) T 1dxx_A 4 WEEVEDSYEREDVQKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPKEKGSTRVHA 73 (120) T ss_dssp -----CCCCCHHHHHHHHHHHHHHHHHHTTCCCCSCTTTTTTTSHHHHHHHHHHHSCCCCCCCCSSHHHH T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCHHHH T ss_conf 4652327789999999999999987362489855479988235999999999976986888898648888 Done!