Query gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 1246
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 02:39:45 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781206.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qgq_A Protein TM_1862; alpha- 42.0 12 0.00049 14.3 4.4 89 987-1085 116-212 (304)
2 2beq_D E2 glycoprotein; viral 39.7 13 0.00053 14.1 2.1 30 870-899 13-42 (48)
3 3i5p_A Nucleoporin NUP170; hel 34.8 13 0.00054 14.0 1.5 105 855-982 222-336 (525)
4 1kmi_Z CHEZ, chemotaxis protei 28.1 19 0.00079 12.8 2.1 106 47-162 45-154 (214)
5 2cop_A Acyl-coenzyme A binding 24.7 22 0.00091 12.4 3.8 43 597-639 61-103 (109)
6 2pjx_A Syntaxin-binding protei 23.1 23 0.00097 12.2 2.3 21 1199-1219 556-576 (592)
7 1epu_A S-SEC1; parallel beta-s 21.3 25 0.0011 11.9 2.1 29 1190-1219 556-584 (591)
8 3e1r_A Centrosomal protein of 20.5 26 0.0011 11.8 3.7 49 131-187 7-55 (58)
9 3k9d_A LMO1179 protein, aldehy 20.1 26 0.0011 11.7 4.4 37 590-626 14-50 (464)
10 3flv_A Acyl-COA-binding domain 19.2 28 0.0012 11.6 3.5 31 598-628 82-112 (119)
No 1
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=42.01 E-value=12 Score=14.33 Aligned_cols=89 Identities=19% Similarity=0.316 Sum_probs=58.6
Q ss_pred HCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHEECCHHHCCHHHHHCCCCHHHHHHHHHHHCC--------
Q ss_conf 015776545357887775454303055688998860898110401322687675305726799999987231--------
Q gi|254781206|r 987 SFEYPLGTYEPAILGAMKDMDRLHPIYSVSKTIQKAGGDPSLMMDYEKVEPSDVMAGLPDDLAKRFKALLSW-------- 1058 (1246)
Q Consensus 987 sfeyplgtyepailgamkdmdrlhpiysvsktiqkaggdpslmmdyekvepsdvmaglpddlakrfkallsw-------- 1058 (1246)
.+..|+-+-.+.+|-+|.---...-+...-..|.+++.+..+.. |+|.|+|.+-..-|..++.|
T Consensus 116 ~i~igieSgs~~vLk~m~r~~t~e~~~~~v~~ir~~~p~~~i~t--------~fIvGfPgET~edf~~T~~fl~~~~~d~ 187 (304)
T 2qgq_A 116 YFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVLRT--------SIIVGFPGETEEDFEELKQFVEEIQFDK 187 (304)
T ss_dssp EEECCCBCSCHHHHHHTTCCSCHHHHHHHHHHHHHHCTTCEEEE--------EEEECCTTCCHHHHHHHHHHHHHHCCSE
T ss_pred EEECCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEE--------EEEEECCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 77406432787999875047645554458876766489955763--------5756789876899999999998569783
Q ss_pred CCCCCCCCCCCCCCCCEEHHHCCCHHH
Q ss_conf 420015778756786300120168877
Q gi|254781206|r 1059 KGWHQLTPAPKISTPSFEVSSYVNPKR 1085 (1246)
Q Consensus 1059 kgwhqltpapkistpsfevssyvnpkr 1085 (1246)
-....++|-| .||.++...-|.+..
T Consensus 188 ~~i~~~sp~p--GT~a~~~~~~v~~~~ 212 (304)
T 2qgq_A 188 LGAFVYSDEE--GTVAFNLKEKVDPEM 212 (304)
T ss_dssp EEEEECCC-------------CCCHHH
T ss_pred EEEEECCCCC--CCCHHHCCCCCCHHH
T ss_conf 3002425669--976666367899799
No 2
>2beq_D E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1 PDB: 1zv7_A
Probab=39.69 E-value=13 Score=14.08 Aligned_cols=30 Identities=30% Similarity=0.507 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 112356887520330877430118999998
Q gi|254781206|r 870 AHLNAEVERLSGLAQQPSDSTADLKELQTQ 899 (1246)
Q Consensus 870 ahlnaeverlsglaqqpsdstadlkelqtq 899 (1246)
-.++.|..|+....+|-.+|--|||+|.+-
T Consensus 13 ldi~~Ei~~l~evik~LN~S~IDLk~l~~y 42 (48)
T 2beq_D 13 VNIQKEIDRLNEVAKNLNESLIDLQELGKY 42 (48)
T ss_dssp CCCHHHHHHHHHHHTTGGGGEECHHHHHHH
T ss_pred EEHHHHHHHHHHHHHHHHHHHHCHHHHCHH
T ss_conf 565989999999999988876169985526
No 3
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=34.77 E-value=13 Score=14.00 Aligned_cols=105 Identities=19% Similarity=0.254 Sum_probs=56.0
Q ss_pred CEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH---
Q ss_conf 20231110033200111235688752033087743011899999887666332113889999999988999999999---
Q gi|254781206|r 855 RYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTADLKELQTQLSRAKKYKESNDERIVSFIRSEFEREIKELKS--- 931 (1246)
Q Consensus 855 rywtiyaferslknqahlnaeverlsglaqqpsdstadlkelqtqlsrakkykesnderivsfirsefereikelks--- 931 (1246)
-.|--|+- |.-|+.| .+-|.-||+.+ ....|.+--.-|+||..+-.+.....-.--..+|-+++.++--
T Consensus 222 LLWryy~k-----~~~~~~A-A~vl~~LA~s~--~~l~L~~RIeyLsrA~~~a~s~~~~~~~~~~~~~l~elee~leVA~ 293 (525)
T 3i5p_A 222 ILWVYYSR-----RSKFFES-AEILYRLATSN--FDITLFERIEFLSRANGFCNSVSPLSQKQRIVQLASRIQDACEVAG 293 (525)
T ss_dssp HHHTHHHH-----CCSHHHH-HHHHHHHHSSS--SCCCHHHHHHHHHHHHHHC-------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HCCHHHH-HHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999997-----0559999-99999984699--8999999999999999985267875315679999999999999999
Q ss_pred -------HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf -------862000138788701789999999999999976664266420000366776
Q gi|254781206|r 932 -------VIEADAKENPNPNKNQKKLQKTREKLVAQLSSRLKELNIDNAYGLWNEYKE 982 (1246)
Q Consensus 932 -------vieadakenpnpnknqkklqktreklvaqlssrlkelnidnayglwneyke 982 (1246)
.+.++...+ . ..++..+.+|.++|..+ -.|+|+|-+
T Consensus 294 IQ~~il~~l~~~~r~~----~------e~~~e~~~~L~~~L~~i-----s~Lyn~yA~ 336 (525)
T 3i5p_A 294 IQGDILSLVYTDARID----S------AIKDELIKTLDGKILST-----SELFNDFAV 336 (525)
T ss_dssp HHHHHHHHHHHCSSSC----H------HHHHHHHHHHHHCCCCH-----HHHHHTTTT
T ss_pred HHHHHHHHHHHCCCCC----H------HHHHHHHHHHHCCCCCH-----HHHHHHHHC
T ss_conf 9999999976135557----5------67999999974544379-----999998635
No 4
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=28.09 E-value=19 Score=12.79 Aligned_cols=106 Identities=16% Similarity=0.184 Sum_probs=42.1
Q ss_pred CCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHH----H
Q ss_conf 047884211000001108999999999999876300366654247779999899998762254665266315899----9
Q gi|254781206|r 47 SSDLNPHKDRYDYIVGPIEQRLKKVSERYERVVSRDLTLVIEAGLKDLKEVGDTLKRLAETGEVILSDKSDRLLC----R 122 (1246)
Q Consensus 47 ssdlnphkdrydyivgpieqrlkkvseryervvsrdltlvieaglkdlkevgdtlkrlaetgevilsdksdrllc----r 122 (1246)
++.+.--.||.+||+.--|+---++-..-|.+...--. +.. ...++...+.++.+.- ++...-|-|| .
T Consensus 45 ~~~iPdA~drL~~Vv~~TE~Aa~~iLdavE~~~p~~~~--L~~---~~~~l~~~w~~~~~~~---~~~~e~~~l~~~~~~ 116 (214)
T 1kmi_Z 45 AEAIPDARDRLYYVVQMTAQAAERALNSVEASQPHQDQ--MEK---SAKALTQRWDDWFADP---IDLADARELVTDTRQ 116 (214)
T ss_dssp TTTHHHHHHHTTTHHHHHHHTTTHHHHHHHHHHHHHHH--HHH---HHHHHHHHHHHHTTSS---CCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH---HHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHH
T ss_conf 85683657789999999999999999999988799999--999---9999999899987173---448999999999999
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 9876401034577599998887548860245888999888
Q gi|254781206|r 123 FMDMVETEDEHKINKQVRDALESAGFDLESTQENIRKVES 162 (1246)
Q Consensus 123 fmdmvetedehkinkqvrdalesagfdlestqenirkves 162 (1246)
|+.-++ +.-..++.++-+.+++..|-= -|.-.|+||-.
T Consensus 117 ~l~~~~-~~~~~~~~~l~eIm~Aq~FQD-LTGQ~IkKVi~ 154 (214)
T 1kmi_Z 117 FLADVP-AHTSFTNAQLLKIMMAQDFQD-LTGQVIKRMMD 154 (214)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTTHHH-HHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHH
T ss_conf 999878-778999999999999724103-88999999999
No 5
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.74 E-value=22 Score=12.38 Aligned_cols=43 Identities=21% Similarity=0.403 Sum_probs=31.2
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 3221564405897899999999998875135767765445301
Q gi|254781206|r 597 AWDSYKEWKSLSPDEIKQRFQKYAKVFYRSYSPVDGSYKGTQE 639 (1246)
Q Consensus 597 awdsykewkslspdeikqrfqkyakvfyrsyspvdgsykgtqe 639 (1246)
-|+..+..+.+|+.+-+++|-....-.+-.|.+-..+.+|+.-
T Consensus 61 Kw~AW~~l~gms~eeA~~~YI~lv~~l~p~w~~~~~~~~~~~a 103 (109)
T 2cop_A 61 KWEAWKALGDSSPSQAMQEYIAVVKKLDPGWNPQIPEKKGKEA 103 (109)
T ss_dssp HHHHHHSCTTCCHHHHHHHHHHHHHHHCTTCCCCCCCCCCCCC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 9999998389999999999999999976253555633457877
No 6
>2pjx_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, endocytosis/exocytosis complex; 3.15A {Mus musculus}
Probab=23.06 E-value=23 Score=12.15 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=13.9
Q ss_pred CCEEEEECCCCCCCHHEEEEE
Q ss_conf 715888217787772018886
Q gi|254781206|r 1199 GEFEVLVPSDASLNPEIIIRQ 1219 (1246)
Q Consensus 1199 gefevlvpsdaslnpeiiirq 1219 (1246)
+.++|.+-+..-+||.-.|.|
T Consensus 556 ~~~~iiiGsT~iln~~~fl~~ 576 (592)
T 2pjx_A 556 KSCEVIIGSTHILTPRKLLDD 576 (592)
T ss_dssp TSSEEEEEESSBCCHHHHHHH
T ss_pred CCCEEEEEECCEECHHHHHHH
T ss_conf 996799984884079999999
No 7
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical bundle, endocytosis/exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A
Probab=21.28 E-value=25 Score=11.91 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=17.1
Q ss_pred HHHCCCCCCCCEEEEECCCCCCCHHEEEEE
Q ss_conf 885599866715888217787772018886
Q gi|254781206|r 1190 EELRGKPKTGEFEVLVPSDASLNPEIIIRQ 1219 (1246)
Q Consensus 1190 eelrgkpktgefevlvpsdaslnpeiiirq 1219 (1246)
.++.-+.++| ++|.+-+..-+||.-.|.+
T Consensus 556 ~~l~~~~~~~-~~iiiGsT~i~n~~~fl~~ 584 (591)
T 1epu_A 556 YEVTQTAKNN-WEVILGSTHILTPEGLLRD 584 (591)
T ss_dssp HHHHTSSCSS-CEEEEEESSBCCHHHHHHH
T ss_pred HHHHHHHCCC-CEEEEEECCEECHHHHHHH
T ss_conf 9999850899-7799982874169999999
No 8
>3e1r_A Centrosomal protein of 55 kDa; CEP55, ALIX, cytokinesis, ESCRT, alternative splicing, cell cycle, cell division, coiled coil, mitosis; 2.00A {Homo sapiens}
Probab=20.49 E-value=26 Score=11.80 Aligned_cols=49 Identities=29% Similarity=0.331 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 345775999988875488602458889998887613537889999998865431023
Q gi|254781206|r 131 DEHKINKQVRDALESAGFDLESTQENIRKVESALINNNMKDAFRFLELAQKSKETAD 187 (1246)
Q Consensus 131 dehkinkqvrdalesagfdlestqenirkvesalinnnmkdafrflelaqksketad 187 (1246)
+-|..+.|.+||||..--=|--.|..-.-|.+-| -|..||.|++...+.
T Consensus 7 nihe~e~qlkdaleknqqwlvydqqreayv~gll--------aki~eleq~~e~a~~ 55 (58)
T 3e1r_A 7 NIHEMEIQLKDALEKNQQWLVYDQQREVYVKGLL--------AKIFELEKKTETAAH 55 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHC
T ss_conf 0999999999999845406444898999999999--------999999999887750
No 9
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Listeria monocytogenes}
Probab=20.13 E-value=26 Score=11.74 Aligned_cols=37 Identities=24% Similarity=0.259 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 4566675322156440589789999999999887513
Q gi|254781206|r 590 SEDLQEKAWDSYKEWKSLSPDEIKQRFQKYAKVFYRS 626 (1246)
Q Consensus 590 sedlqekawdsykewkslspdeikqrfqkyakvfyrs 626 (1246)
-+++-+.|-+.+++|..+++.+-...+.+.|..+...
T Consensus 14 v~~av~~A~~A~~~w~~~s~~eR~~iL~~~a~~l~~~ 50 (464)
T 3k9d_A 14 VRNLIESANKAQKELAAMSQQQIDTIVKAIADAGYGA 50 (464)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999998099999999999999999978
No 10
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, structural genomics consortium, SGC, alternative splicing; HET: STE COA; 1.70A {Homo sapiens}
Probab=19.20 E-value=28 Score=11.61 Aligned_cols=31 Identities=13% Similarity=0.364 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 2215644058978999999999988751357
Q gi|254781206|r 598 WDSYKEWKSLSPDEIKQRFQKYAKVFYRSYS 628 (1246)
Q Consensus 598 wdsykewkslspdeikqrfqkyakvfyrsys 628 (1246)
|++++..+.+|+++-+++|-...+-+.+++.
T Consensus 82 w~AW~~l~gmS~~eAm~~YI~lv~~li~~~~ 112 (119)
T 3flv_A 82 WDAWSSLGDMTKEEAMIAYVEEMKKIIETMP 112 (119)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999983899999999999999999998678
Done!