RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781206|ref|YP_003065619.1| hypothetical protein
CLIBASIA_05565 [Candidatus Liberibacter asiaticus str. psy62]
         (1246 letters)



>gnl|CDD|36247 KOG1029, KOG1029, KOG1029, Endocytic adaptor protein intersectin
           [Signal transduction mechanisms, Intracellular
           trafficking, secretion, and vesicular transport].
          Length = 1118

 Score = 40.1 bits (93), Expect = 0.004
 Identities = 61/348 (17%), Positives = 137/348 (39%), Gaps = 48/348 (13%)

Query: 385 TSELKQATVLARANAQEEKQRR---EQEAKEKADREKADKEAKEKADREKADKDLQEKTP 441
           T E K+     +  A+ E++R+   EQ+ +E+ + E+ ++E +EK +RE+ +++ + +  
Sbjct: 313 TFEDKRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLE 372

Query: 442 IKAEGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDI 501
           ++ + +                  ++ E+E  ++E +K KE    E   REE E++ Q  
Sbjct: 373 LEKQLE------------------RQREIERQREEERK-KEIERREA-AREELEKQRQLE 412

Query: 502 LDNS----LLAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQ-DQREKPLASDIGVGES 556
            + +    +L  K   +     +   K    Q  + +  K  Q   + + +  DI   ++
Sbjct: 413 WERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKT 472

Query: 557 DYAGIK-------LTKKEKELQEQEENLRVAEIIQQSRMQSEDLQEKAWDSYKEWKSLSP 609
           +   +            + + + +E   ++ ++  + +  +  L++K     +  +  S 
Sbjct: 473 EIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKS- 531

Query: 610 DEIKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAINHFLDNDFGYYRIHNFLSQWSPLGL 669
            E++   +K   +       +D   K T+     I+ F +         N          
Sbjct: 532 -ELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVN--------SQ 582

Query: 670 MYEKDELHGVEAVYQKLDVLFRHCIENLRANKNAVDAMSKAVEAGESS 717
              K+EL+  E    KL       +E L   K A  A + A +AG  +
Sbjct: 583 QLAKEELYKNE--RDKLKEAETKALE-LIGEKEAESAPASAADAGAPA 627


>gnl|CDD|37213 KOG2002, KOG2002, KOG2002, TPR-containing nuclear phosphoprotein
           that regulates K(+) uptake [Inorganic ion transport and
           metabolism].
          Length = 1018

 Score = 38.4 bits (89), Expect = 0.013
 Identities = 43/209 (20%), Positives = 82/209 (39%), Gaps = 40/209 (19%)

Query: 388 LKQATV-LARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEG 446
           LKQA   +A+A  ++E++RR ++ KE+    +  KE +E   +E+ +K  +EK   + E 
Sbjct: 819 LKQALEHVAQAQEEDEEERRAKQEKEEEALIE--KELEEARRKEEEEKARREKLEKQRE- 875

Query: 447 DDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSL 506
                          +   +  +L E+++E KK    G    DD +    + +       
Sbjct: 876 ------------EYRERTKEILKLPEIEEEKKKSGGGGRKRGDDSDSDGERKK------- 916

Query: 507 LAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKK 566
             GK   K++       K  P +  K   +K  +  R KP +            I  +++
Sbjct: 917 -GGKRKKKDKKK----RKRKPKKDSK---EKLSESDRRKPKSKAF---------ISTSER 959

Query: 567 EKELQEQEENLRVAEIIQQSRMQSEDLQE 595
             +   ++      +  Q SR  SE+   
Sbjct: 960 SDDDVVKKAESDSDDDSQDSREASEESDR 988


>gnl|CDD|32878 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
           envelope biogenesis, outer membrane].
          Length = 387

 Score = 38.2 bits (88), Expect = 0.013
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 1/99 (1%)

Query: 341 QIKQLRDLASKVKADYHWAEIRHGNRFKAETRLAYSTIANVANFTSELKQATVLARANAQ 400
           + KQ  + A K  A+          +  AE     +  A       E  +A   A+A A+
Sbjct: 130 EQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAA-AEAKKKAEEAAKAAEEAKAKAE 188

Query: 401 EEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEK 439
               +++ EA+ KA  EKA  EA+ KA  EK  +   E+
Sbjct: 189 AAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEE 227



 Score = 35.1 bits (80), Expect = 0.13
 Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 388 LKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGD 447
            ++A   A A A+ EK + E  A+EKA  EK    AK KAD+  A     E+    A  D
Sbjct: 204 AEKAKAEAEAKAKAEK-KAEAAAEEKAAAEKKKAAAKAKADKAAAAAKAAERKAAAAALD 262

Query: 448 DFGLGLPS 455
           D   GL S
Sbjct: 263 DIFGGLSS 270



 Score = 33.2 bits (75), Expect = 0.46
 Identities = 31/142 (21%), Positives = 49/142 (34%)

Query: 389 KQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDD 448
           KQA    +    E+KQ+ EQ  K  A+++K  + AK KA  E A      +   KAE   
Sbjct: 118 KQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAA 177

Query: 449 FGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLA 508
                      +     K E   +   E  K +     + + + E   + +   +    A
Sbjct: 178 KAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAA 237

Query: 509 GKTHTKNETPAIPTAKAPPAQA 530
            K        A   A+   A A
Sbjct: 238 AKAKADKAAAAAKAAERKAAAA 259


>gnl|CDD|38298 KOG3088, KOG3088, KOG3088, Secretory carrier membrane protein
           [Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 313

 Score = 37.6 bits (87), Expect = 0.022
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 12/94 (12%)

Query: 546 PLASDIGVGESDYAGIKLTKKEKELQEQEENL--RVAEIIQQSR-MQSEDL--QEKAWDS 600
               DI +         L KK+ EL +++E L  +  E+ ++ R +    +  +E  W  
Sbjct: 45  GPTVDIPLDSPSTQAKDLAKKQAELLKKQEELRRKEQELDRRERALARAGIVIRENNWPP 104

Query: 601 YKEWKSLSP-------DEIKQRFQKYAKVFYRSY 627
              +  + P       +EI   FQK  K  Y  +
Sbjct: 105 LPSFIPVFPCFYQDISNEIPVEFQKLVKRAYYLW 138


>gnl|CDD|36371 KOG1156, KOG1156, KOG1156, N-terminal acetyltransferase [Chromatin
           structure and dynamics].
          Length = 700

 Score = 36.1 bits (83), Expect = 0.065
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 9/101 (8%)

Query: 398 NAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVP 457
            + EEK   + + K++  ++KA KEAK+K D++K +   Q   P+  + D FG  L    
Sbjct: 582 MSDEEK---KIKKKQRKAKKKAKKEAKKKKDKKKKEAKSQSGKPVDIDEDPFGEKLLKTE 638

Query: 458 THSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKN 498
                  P EE  + + +   KGKE G T     E   RK 
Sbjct: 639 D------PLEEARKFLPNLQHKGKEKGETYILSFELYYRKG 673


>gnl|CDD|34868 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
            (vWA) domain [General function prediction only].
          Length = 4600

 Score = 35.1 bits (80), Expect = 0.12
 Identities = 47/217 (21%), Positives = 85/217 (39%), Gaps = 20/217 (9%)

Query: 399  AQEEKQRREQEAKEK-ADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVP 457
             +E+    EQ++ E+ A   ++D  +KE  ++   DKD QEK   +   DD G+      
Sbjct: 3912 NEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGI------ 3965

Query: 458  THSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLAG---KTHTK 514
               ++ P  +E   +   E +    P   + D++E    K+ D+ D  + A    K    
Sbjct: 3966 DDEIQ-PDIQENNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEAD 4024

Query: 515  NETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKKEKELQEQE 574
             E    P     P + +  + +   QD     LA D      D         E+ +QE E
Sbjct: 4025 AEKDE-PMQDEDPLEENNTLDEDIQQDD-FSDLAEDDEKMNED-------GFEENVQENE 4075

Query: 575  ENLRVAEIIQQSRMQSEDLQEKAWDSYKEWKSLSPDE 611
            E+        +   Q E  +++A D++ +  + S   
Sbjct: 4076 ESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAKSTFA 4112


>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein.  This family
           consists of several Borrelia P83/P100 antigen proteins.
          Length = 489

 Score = 35.0 bits (80), Expect = 0.13
 Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 7/112 (6%)

Query: 389 KQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDD 448
           +  T L    +QE+ +R +Q  +E   ++    +A++KAD  + + D Q     + + + 
Sbjct: 198 RDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEA 257

Query: 449 FGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQD 500
             L  P+  +      PKE+  ++V +  K+  E    E    +E   K +D
Sbjct: 258 KNLPKPADTSS-----PKED--KQVAENQKREIEKAQIEIKKNDEEALKAKD 302



 Score = 30.7 bits (69), Expect = 2.7
 Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 23/146 (15%)

Query: 389 KQATVLARANAQEEKQRREQEAKEKADREKADK----EAKEKADREKADKDLQEKTPIKA 444
           K       A    +KQR E   K++  +           KE     +  K   EK  I+ 
Sbjct: 231 KAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEI 290

Query: 445 EGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDN 504
           + +D              L  K+ +  ++K E K  ++      D   E ++K + + ++
Sbjct: 291 KKNDEEA-----------LKAKDHKAFDLKQESKASEK---EAEDKELEAQKKREPVAED 336

Query: 505 SLLAGKTHTKNETPAIPTAKAPPAQA 530
                   TK +  A PT+    A  
Sbjct: 337 L-----QKTKPQVEAQPTSLNEDAID 357


>gnl|CDD|36359 KOG1144, KOG1144, KOG1144, Translation initiation factor 5B
           (eIF-5B) [Translation, ribosomal structure and
           biogenesis].
          Length = 1064

 Score = 35.0 bits (80), Expect = 0.15
 Identities = 37/216 (17%), Positives = 84/216 (38%), Gaps = 15/216 (6%)

Query: 382 ANFTSELKQATVLARANAQEEKQRREQEAKEKADREKADKEAK-EKADREKADKDLQEKT 440
           A    + ++A    +   +E+++++E  A   A++    KE K EK+  E A+ + +E  
Sbjct: 145 AGEKEKKEKAAAKKKKEKKEKEKKKEDSAAAAAEKSVEAKEEKKEKSVTEPAEPEKKEAK 204

Query: 441 PIKAEGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQD 500
             KAE           P     +     + +E ++  K+ +E      ++ EE  R+ ++
Sbjct: 205 GKKAEK--------KKPKGVRAMQEALAKRQEEEERQKREEEE-RLRREEEEERRREEEE 255

Query: 501 ILDNSLLAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAG 560
             +      K   + E      A+     A +  +    +   ++ LAS  G+  +D  G
Sbjct: 256 AQEEEAKEKKKEKEKEKKERKKAEGKLLTAKQKEEAALAEAFLKQLLASGGGLPVADKDG 315

Query: 561 IK-----LTKKEKELQEQEENLRVAEIIQQSRMQSE 591
                     K+K+ +++  +    E + +   +  
Sbjct: 316 DSKKRPIYANKKKKARQKGNDRTSVEKLGEVEAKEN 351



 Score = 34.2 bits (78), Expect = 0.24
 Identities = 44/217 (20%), Positives = 82/217 (37%), Gaps = 24/217 (11%)

Query: 394 LARANAQEEKQRREQEAKEKADREKADKE-----AKEKADREKADKDLQEKTPIKAEGDD 448
           LA+   +EE+Q+RE+E + + + E+  +       +E+A  +K +K+ ++K   KAEG  
Sbjct: 223 LAKRQEEEERQKREEEERLRREEEEERRREEEEAQEEEAKEKKKEKEKEKKERKKAEG-- 280

Query: 449 FGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGK--EPGTTETDDREETERKNQDILDNSL 506
                        KL   +++ E    E    +    G       ++ + K + I  N  
Sbjct: 281 -------------KLLTAKQKEEAALAEAFLKQLLASGGGLPVADKDGDSKKRPIYANKK 327

Query: 507 LAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKK 566
              +    + T      +    + H G  D    D  E  L  D    E +     + ++
Sbjct: 328 KKARQKGNDRTSVEKLGEVEAKENHAG--DVGSVDTEEVDLEEDSNTDEKEGTPEDVDQE 385

Query: 567 EKELQEQEENLRVAEIIQQSRMQSEDLQEKAWDSYKE 603
           E E ++  +      I        E+LQE+     KE
Sbjct: 386 EGEEEDDWDAKVDLAIDGDDDDDEEELQEEVDKELKE 422



 Score = 31.5 bits (71), Expect = 1.3
 Identities = 40/210 (19%), Positives = 71/210 (33%), Gaps = 23/210 (10%)

Query: 401 EEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVPTHS 460
            E    E       D E+ D++AK+ +    +    ++K  +K             P   
Sbjct: 18  SEALLAELLVATDKDDEEEDEDAKKASTLAFSGAKKKKKKGLKLSSPGDDSEELEEPEGK 77

Query: 461 VKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLAGKTHTKNETPAI 520
            K   K E +E  K + KK K+       + E+   K        LLA            
Sbjct: 78  TKKTAKVEVVETGKSKKKKKKKKKKKGKAEEEDDLDK--------LLASLGEK------- 122

Query: 521 PTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKKEKELQEQEENLRVA 580
                    + K  ++ +P++      A +    E   A  K  KKEKE ++++     A
Sbjct: 123 -----DEPASEKEKKEAQPENVAPVEAAGEKEKKEKAAAKKKKEKKEKEKKKEDSAAAAA 177

Query: 581 EIIQQSRMQSEDLQEKAWDSYKEWKSLSPD 610
           E   ++    E+ +EK+     E +     
Sbjct: 178 EKSVEA---KEEKKEKSVTEPAEPEKKEAK 204



 Score = 31.5 bits (71), Expect = 1.5
 Identities = 36/203 (17%), Positives = 74/203 (36%), Gaps = 6/203 (2%)

Query: 395 ARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLP 454
            R   +EE++R E+EA+E+  +EK  ++ KEK +R+KA+  L   T  + E         
Sbjct: 241 LRREEEEERRREEEEAQEEEAKEKKKEKEKEKKERKKAEGKLL--TAKQKEEAALAEAFL 298

Query: 455 SVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLAGKTHTK 514
                S    P  ++  + K       +    +   R++   +        + A + H  
Sbjct: 299 KQLLASGGGLPVADKDGDSKKRPIYANK----KKKARQKGNDRTSVEKLGEVEAKENHAG 354

Query: 515 NETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKKEKELQEQE 574
           +              ++   ++  P+D  ++    +          I     + E + QE
Sbjct: 355 DVGSVDTEEVDLEEDSNTDEKEGTPEDVDQEEGEEEDDWDAKVDLAIDGDDDDDEEELQE 414

Query: 575 ENLRVAEIIQQSRMQSEDLQEKA 597
           E  +  +  ++    SE   E A
Sbjct: 415 EVDKELKEAEEEEEDSEKPTEDA 437


>gnl|CDD|145291 pfam02029, Caldesmon, Caldesmon. 
          Length = 807

 Score = 34.5 bits (78), Expect = 0.20
 Identities = 72/397 (18%), Positives = 151/397 (38%), Gaps = 19/397 (4%)

Query: 387 ELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEG 446
           ELK   + A     EE    E+   E +  E A  E KE+A+ E+A  + +EK  IKAE 
Sbjct: 228 ELKNGAINAEEPKDEEA--MEEGEDEISHHEDAADEDKEEAEAERAKLEAEEKERIKAEE 285

Query: 447 DDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSL 506
           D       +      K   +E E  + ++E +  +E    + ++ ++   + +       
Sbjct: 286 DKKAADEKAKAEAEEKAAAEERERAKAEEEKRAAEERERAKAEEEKKAAEERERAKAEE- 344

Query: 507 LAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKK 566
              K   +    A    KA   +A    ++KK  ++R++  A +    +++       ++
Sbjct: 345 -EKKAAEERAKIAEEEKKAAEERAKIAEEEKKAAEERQRAKAEEEEKAKAEEQERAKAEE 403

Query: 567 EKELQEQEENLRVAEI--------IQQSRMQSEDLQEKAWDSYKEWKSLSPDEIKQRFQK 618
           EK+  E+E  +   ++        +++ + Q +  Q       +E K    +  K++  +
Sbjct: 404 EKKAAEEEAKIEAEKLEEKIEGKKMEEKKAQEDKAQAALLKKQEEDKEAKVEAKKEKLPE 463

Query: 619 YAKVFYRSYSPVDGSYKGTQESDKAINHFLDNDFGYYRIHNFLSQWSPLGLMYEKDELHG 678
             K  ++     D      +   + +  F+D   G+       +Q      M  K  L  
Sbjct: 464 DLKPTFKKDEIKDEKIDKDKAPKEEMKSFMDRKKGFPEQK---AQNGEREFMTHK--LKH 518

Query: 679 VEAVYQKLDVLFRHCIENLRANKNA-VDAMSKAVEAGESSVRKHSFEVLSSKHQKSVIAV 737
            E  + +         +      NA      + +           FE L  K Q++ + +
Sbjct: 519 TENAFGRPGGRASVDTKEAEGAANAEAGKRLEELRRRRGETESEEFEKLKEKQQEAALEL 578

Query: 738 NNFIKEITHHTRRLVKEDPKRGKSESYLSDIRSELQK 774
           +  +K+     R++++E+ ++ K E     IR E +K
Sbjct: 579 DE-LKKKREERRKILEEEEQKKKQEEADRKIREEEEK 614


>gnl|CDD|37135 KOG1924, KOG1924, KOG1924, RhoA GTPase effector DIA/Diaphanous
            [Signal transduction mechanisms, Cytoskeleton].
          Length = 1102

 Score = 34.2 bits (78), Expect = 0.23
 Identities = 14/50 (28%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 379  ANVANFTSELKQATVLA-RANAQEEKQRREQEAKEKADREKADKEAKEKA 427
            A++  F +   +A     +   +EEK+RR + AKE++++E+ +++ ++KA
Sbjct: 980  ADIRTFRNAFLEAVAENEKRREEEEKERRAKLAKEQSEQERLERQQRKKA 1029


>gnl|CDD|38799 KOG3592, KOG3592, KOG3592, Microtubule-associated proteins
           [Cytoskeleton].
          Length = 934

 Score = 34.0 bits (77), Expect = 0.26
 Identities = 39/200 (19%), Positives = 62/200 (31%), Gaps = 22/200 (11%)

Query: 387 ELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQ--EKTPIKA 444
            LK+       + + E  + ++   +K D   +  E K      +A   L     TP +A
Sbjct: 367 ALKKGAPAKPEDKKAEAIKPKKAVGKKQDGAPSKPEVKVINKGARAPPSLSSGPATPPEA 426

Query: 445 E----------GDDFGLGL-------PSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTE 487
           E            D  L          S P   V +PP  E     +      KE G   
Sbjct: 427 ERRKPESVAVVLPDLELKPFPEDFNKGSAPLAIVVIPPTPEVPRLEESHKTHPKESGVPA 486

Query: 488 TDDREETERKNQDILDNSLLAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPL 547
            D +   E K+    +   +     T   TP  PT +   A      + +  +     P 
Sbjct: 487 EDGKAPLEVKDVRNAEA--VPDAIPTPVTTPKKPTPRPEAAVGGGSEETEIDESLDASPE 544

Query: 548 ASDIGVGESDYAGIKLTKKE 567
             D  V  +D A +K    +
Sbjct: 545 PLD-PVELTDEAELKPPTPD 563


>gnl|CDD|36151 KOG0933, KOG0933, KOG0933, Structural maintenance of chromosome
           protein 2 (chromosome condensation complex Condensin,
           subunit E) [Chromatin structure and dynamics, Cell cycle
           control, cell division, chromosome partitioning].
          Length = 1174

 Score = 33.8 bits (77), Expect = 0.33
 Identities = 22/102 (21%), Positives = 40/102 (39%)

Query: 867 KNQAHLNAEVERLSGLAQQPSDSTADLKELQTQLSRAKKYKESNDERIVSFIRSEFEREI 926
           K    L  E++ L   +Q+  D    L+    +L+  +K  E N+   +     E   E+
Sbjct: 691 KELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEV 750

Query: 927 KELKSVIEADAKENPNPNKNQKKLQKTREKLVAQLSSRLKEL 968
           +E +  I+   +           L+K  +   A    RLK+L
Sbjct: 751 EESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDL 792


>gnl|CDD|146667 pfam04147, Nop14, Nop14-like family.  Emg1 and Nop14 are novel
           proteins whose interaction is required for the
           maturation of the 18S rRNA and for 40S ribosome
           production.
          Length = 809

 Score = 33.4 bits (77), Expect = 0.37
 Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 15/107 (14%)

Query: 399 AQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVPT 458
           A+EE +R ++   E+  R + ++E  E+ +  K   D  +      + D+FGLG      
Sbjct: 264 AKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQG---- 319

Query: 459 HSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNS 505
              +   +EE+  + +DE          + DD  E E ++ D+ D+ 
Sbjct: 320 --EEDEEEEEDGVDDEDE---------EDDDDDLEEEEEDVDLSDDE 355


>gnl|CDD|36509 KOG1295, KOG1295, KOG1295, Nonsense-mediated decay protein Upf3
           [RNA processing and modification].
          Length = 376

 Score = 33.5 bits (76), Expect = 0.39
 Identities = 51/262 (19%), Positives = 92/262 (35%), Gaps = 25/262 (9%)

Query: 350 SKVKADYHWAEIRHGNRFKAETRLAYSTIANVANFTSELKQATVLARANAQEEKQRREQE 409
           +    +    EI    +  A  ++       ++      KQ     R   +EE++RRE E
Sbjct: 106 ASKLKETLLGEIEGDTKSLAFKKVTPL----LSFIKQADKQRI---RKLRREERRRREIE 158

Query: 410 AKE-----KADREKADKEAKEKADREKADKDLQ--------EKTPIKAEGDDFGLGLPSV 456
            KE     K D+EK   + K+   ++K DKD          +K   K +         S 
Sbjct: 159 EKENREEVKKDKEKESGKRKDTDKQKKIDKDEPRIEKEDENDKPFEKGKKILKENLKDSR 218

Query: 457 PTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLAGKTHTKNE 516
            + SV    K+ E    K     G E    E  +   T RK  +         +   K+E
Sbjct: 219 QSLSVPATSKKAESSLEKPA-TSGTETREAERKEERSTPRKESNKEKRQKNKNRPKKKHE 277

Query: 517 TPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKKEKELQEQEEN 576
                  K  P    K   +K+ +  R K    + G  + +    ++ +KE+   +    
Sbjct: 278 EKE-SDGKRKPRSKKK---EKRERRDRGKKYTENRGFTQPEDVYKEVHRKERTSMKDRPA 333

Query: 577 LRVAEIIQQSRMQSEDLQEKAW 598
           L++     ++R ++   +   W
Sbjct: 334 LQLYCPGARARKRACTERLPWW 355


>gnl|CDD|34166 COG4499, COG4499, Predicted membrane protein [Function unknown].
          Length = 434

 Score = 33.0 bits (75), Expect = 0.48
 Identities = 13/42 (30%), Positives = 25/42 (59%)

Query: 398 NAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEK 439
              +++    +EA+ KA  EK  +E  EK  +E+AD+D +++
Sbjct: 386 GEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKR 427



 Score = 29.9 bits (67), Expect = 4.5
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 386 SELKQATVLARANAQE---EKQRREQEAKEKADREKADKEAKEKADREKADKDLQEK 439
            +L+  T        E    ++   +  +EK  +E+ +K+ KE+AD +K  +   E+
Sbjct: 376 KKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDER 432


>gnl|CDD|38264 KOG3054, KOG3054, KOG3054, Uncharacterized conserved protein
           [Function unknown].
          Length = 299

 Score = 33.1 bits (75), Expect = 0.57
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 15/108 (13%)

Query: 396 RANAQEEKQRREQEAKEKADRE-KADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLP 454
            A  + +++RR Q   E+A+RE +  KE  E+A+R+K ++ L E+  +K E         
Sbjct: 108 EAKLEAKQERRAQREAEEAEREERKRKEDYEEAERKKDEERLAEEAELKEE--------- 158

Query: 455 SVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDIL 502
                  +   KEEE  +  +E  K K   + E +  EE + + QD L
Sbjct: 159 -----EKERKAKEEEARKEHEEYLKMKAAFSVEEEGTEEVQGEEQDNL 201


>gnl|CDD|39013 KOG3809, KOG3809, KOG3809, Microtubule-binding protein MIP-T3
           [Cytoskeleton].
          Length = 583

 Score = 32.4 bits (73), Expect = 0.75
 Identities = 32/181 (17%), Positives = 60/181 (33%), Gaps = 17/181 (9%)

Query: 385 TSELKQATVLARANAQEEKQRREQEAKEKADRE-KADKEAKEKADREKADKDLQEKTPIK 443
           T E K+     ++   +EK ++  ++KE+   E ++ ++  EK+ + K  +    K   K
Sbjct: 175 THERKEKEEKKKSAEPKEKDKKSSKSKERPKSEDRSSRKNSEKSSKSKKKEKSTTKEKPK 234

Query: 444 AEGDDFGLGLPSVPTHSVKLPPKEE----ELEEVKDEGKKGKEPGTT---ETDDRE---- 492
            E D+                          E       K  E G     ETD  E    
Sbjct: 235 KESDNLSQSKDPSEREFSTQDSMSAVNGDAPEPEMVTPNKENEAGVRPVQETDTHEISEP 294

Query: 493 ETERKNQDILDNSLLAGKTHTKNETPAIPT--AKAPPAQAHKGIQDKKPQDQREKPLASD 550
           E    ++       L   +  +  T  +PT        +  +       + +RE PL  +
Sbjct: 295 EVISNSESDSSAQSL---SIRQPVTSPLPTESQMGESPRMIEPEDRPSGEAKREVPLTRE 351

Query: 551 I 551
           +
Sbjct: 352 M 352


>gnl|CDD|145380 pfam02194, PXA, PXA domain.  This domain is associated with PX
           domains pfam00787.
          Length = 182

 Score = 32.2 bits (74), Expect = 0.82
 Identities = 21/102 (20%), Positives = 47/102 (46%), Gaps = 15/102 (14%)

Query: 22  SEDVAKTLTSIQDNIKHLREFIIAWSSDLNPHKDRYD-------YIVGPIEQRLKKVSER 74
           S +V   L  + D I  +R+F+ +W S ++P ++  +       + +  + QRL++V   
Sbjct: 1   SPEVDAALEELIDLI--IRDFVQSWYSRISPDEEFPNEIRQVLRHAIRELSQRLRRV--D 56

Query: 75  YERVVSRDLTLVIEAGLKDLKE----VGDTLKRLAETGEVIL 112
              +++  L  ++   L+  +E    V +      E+ E+ L
Sbjct: 57  LADLLTDRLLPLLTKHLESFREAEAAVRNLSSSSTESEELEL 98


>gnl|CDD|38102 KOG2891, KOG2891, KOG2891, Surface glycoprotein [General function
           prediction only].
          Length = 445

 Score = 32.2 bits (72), Expect = 0.84
 Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 1/98 (1%)

Query: 385 TSELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKA 444
              L+ A +  R   ++EKQ  EQ A+E+  RE+  +E +   ++E+ + +  E+   + 
Sbjct: 315 DKHLEDAEIKKRQLERQEKQELEQMAEEEKKREEEAEERQRAEEKEQKEAEELERARKRE 374

Query: 445 EGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKE 482
           EG    L        + +   K++E E++K E +K KE
Sbjct: 375 EGVKL-LKFEFEKIEAREERRKQKEEEKLKAEEQKIKE 411


>gnl|CDD|37454 KOG2243, KOG2243, KOG2243, Ca2+ release channel (ryanodine receptor)
            [Signal transduction mechanisms].
          Length = 5019

 Score = 32.0 bits (72), Expect = 1.1
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 395  ARANAQEEKQRREQEAK---EKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGL 451
            A+A A EE+   E E K   EKAD E  +KE K K + E+A+    E    K +     +
Sbjct: 4464 AKAQAAEEEAAEEAEGKSEPEKADGEDGEKEDKAK-EEEQAEYLWDEGKKKKKQLCGHKV 4522

Query: 452  GLPSVPT 458
              P    
Sbjct: 4523 EEPEAFE 4529


>gnl|CDD|39983 KOG4786, KOG4786, KOG4786, Ubinuclein, nuclear protein interacting
           with cellular and viral transcription factors
           [Transcription, Signal transduction mechanisms].
          Length = 1136

 Score = 31.8 bits (71), Expect = 1.1
 Identities = 30/157 (19%), Positives = 61/157 (38%), Gaps = 8/157 (5%)

Query: 388 LKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKD-LQEKTPIKAEG 446
           LK+     +   +++ ++   EAK+  +R K ++E +E+ +R++ +K   +E+  I    
Sbjct: 692 LKKLEEKLKKEKEKQAEKDRIEAKKFEERMKKEQEKQEEKERKEREKREEKERKEIMERK 751

Query: 447 DDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSL 506
                   +         P ++++ E +   +K      T  + R    R     +  + 
Sbjct: 752 KREEDDRIAAKLQLSCQAPLDKKMPEAEQSKRKEHSLPRTSAEARRAVPRPGPIKMMRA- 810

Query: 507 LAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQR 543
                  + E P       PPA   +GIQ K P D  
Sbjct: 811 -QQLQRRQEEAPP-----PPPANHLQGIQVKPPVDHS 841


>gnl|CDD|35383 KOG0161, KOG0161, KOG0161, Myosin class II heavy chain
            [Cytoskeleton].
          Length = 1930

 Score = 31.7 bits (72), Expect = 1.2
 Identities = 106/598 (17%), Positives = 216/598 (36%), Gaps = 80/598 (13%)

Query: 399  AQEEKQRREQEAKEKADREKADKEAKEKAD-REKADKDLQEKTPIKAEGDDFGLGLPSVP 457
             + E++ R +E + +  +E+  K   ++ +  EK  K L+EK  ++ +          + 
Sbjct: 834  TKTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQ----------LQ 883

Query: 458  THSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLAGKTHTKNET 517
                 L   EE LE ++ E ++ ++      +  EE E KN ++        +   + + 
Sbjct: 884  AEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKE 943

Query: 518  PAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKKEKELQEQEENL 577
                  +       K   +K   + + K L  +I   + + +  KL+K++KEL+E+   L
Sbjct: 944  ----QLEELELTLQKLELEKNAAENKLKNLEEEINSLDENIS--KLSKEKKELEERIREL 997

Query: 578  RVAEIIQQSRMQSEDLQEKAWDSYKEWKSLSPDEIKQRF---QKYAKVFYRSYSPVDGSY 634
                   Q  +Q+E+ + K+ +  K       D+++      ++      ++   ++G  
Sbjct: 998  -------QDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGEL 1050

Query: 635  KGTQESDKAIN---HFLDNDFG--YYRIHNFLSQWSPLGLMYEK---------------- 673
            K  QES + +      LDN        +    S+         +                
Sbjct: 1051 KDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELE 1110

Query: 674  DELHGVEAVYQKLDVLFRHCIENLRANKNAVDAMSKAVEAGESSVRKHSFEV--LSSKHQ 731
            +EL    A   K +   R   E L   K  ++       A     +K   EV  L    +
Sbjct: 1111 EELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLE 1170

Query: 732  KSVIAVNNFIKEITHHTRRLVKEDPKRGKSESYLSDIRSELQKVNKTVMDIRIKLRLYGI 791
            +  +     I+E+       + E          L +   +LQK    +   + K  L   
Sbjct: 1171 EETLDHEAQIEELRKKHADSLAE----------LQEQLEQLQKDKAKL--EKEKSDLQRE 1218

Query: 792  FQDIPQEQPPLYTIISGSEKILQGDYTFPPLSSLDVQSKFDSSYSKLFEIFYGDWTNNAI 851
              D+  E   L  + S  + + + D       S ++Q K D       ++          
Sbjct: 1219 IADLAAE---LEQLSSEKKDLEKKDKKLEAQLS-ELQLKLDEQERLRNDL--------TA 1266

Query: 852  KEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTADLKELQTQLSRAKKYKESND 911
            K  R       E    ++    AE + LS L++      + L+EL+ QL    + K + +
Sbjct: 1267 KRSRLQN----ENEELSRQLEEAEAK-LSALSRDKQALESQLEELKRQLEEETREKSALE 1321

Query: 912  ERIVSFIRSEFEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQLSSRLKELN 969
              +      E +   ++L+   EA  +     +K   +L + ++K   ++  RL+EL 
Sbjct: 1322 NALRQL-EHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELE 1378



 Score = 30.2 bits (68), Expect = 3.9
 Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 23/122 (18%)

Query: 858  TIYAFERSLKNQAHLNAE--------VERLSGLAQQPSDSTADLKELQTQLSRAKKYKES 909
             + A E+  K    L AE           L    ++    + +L++L+  L    +  E 
Sbjct: 1429 AVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLE- 1487

Query: 910  NDERIVSFIRSEFEREIKELKSVIEADAKENPNPNKNQKKLQKTR---EKLVAQLSSRLK 966
                       E  RE K L   IE   ++     K   +L+K +   E+   +L + L+
Sbjct: 1488 -----------ELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALE 1536

Query: 967  EL 968
            EL
Sbjct: 1537 EL 1538


>gnl|CDD|34791 COG5192, BMS1, GTP-binding protein required for 40S ribosome
            biogenesis [Translation, ribosomal structure and
            biogenesis].
          Length = 1077

 Score = 31.7 bits (71), Expect = 1.2
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query: 386  SELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQE 438
             E+K   V  R   QEEK+R E   + K +     ++ +E+  R+    + +E
Sbjct: 1015 HEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKE 1067


>gnl|CDD|30368 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal
           structure and biogenesis].
          Length = 577

 Score = 31.8 bits (72), Expect = 1.3
 Identities = 24/140 (17%), Positives = 50/140 (35%), Gaps = 13/140 (9%)

Query: 112 LSDKSDRLLCRFMDMVETEDEHKINKQ------VRDALESAGFDLESTQENIRKVESALI 165
                + LL + + +V   +  K++ +      + D L+ AG       E   +    + 
Sbjct: 361 YGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEEKEEKNEEIA 420

Query: 166 NNNMKDAFRFLELAQKSKETADSHIIEAIDVGTKLKENTPPT---TFTSISKVLLKSNNM 222
                DA R+ +L++      D   +   D     + NT P        I  +L K+   
Sbjct: 421 EVVGIDAVRYADLSRS----RDKDYVFDWDKALSFEGNTAPYVQYAHARICSILRKAGED 476

Query: 223 QDVVFTKIKEVVKKHVNAEL 242
           +  + T+   ++ +    EL
Sbjct: 477 ELDLSTEADALLTELEEREL 496


>gnl|CDD|147216 pfam04935, SURF6, Surfeit locus protein 6.  The surfeit locus
           protein SURF-6 is shown to be a component of the
           nucleolar matrix and has a strong binding capacity for
           nucleic acids.
          Length = 208

 Score = 31.5 bits (72), Expect = 1.3
 Identities = 11/51 (21%), Positives = 26/51 (50%)

Query: 395 ARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAE 445
             +  +  + RR +  + K  +++  KEAK+K D +K + +  +    K++
Sbjct: 1   PSSREELLEARRRKREQRKERKKEKRKEAKKKEDAQKEEAEEVKNEENKSK 51



 Score = 29.2 bits (66), Expect = 8.1
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 396 RANAQEEKQRREQEAKE--KADREKADKEAKEKADREKADKDLQEKTPIKAE 445
           R    E ++R+ ++ KE  K  R++A K+   + +  +  K+ + K+  KA 
Sbjct: 4   REELLEARRRKREQRKERKKEKRKEAKKKEDAQKEEAEEVKNEENKSKKKAA 55


>gnl|CDD|38804 KOG3598, KOG3598, KOG3598, Thyroid hormone receptor-associated
            protein complex, subunit TRAP230 [Transcription].
          Length = 2220

 Score = 31.6 bits (71), Expect = 1.4
 Identities = 36/197 (18%), Positives = 59/197 (29%), Gaps = 24/197 (12%)

Query: 400  QEEKQRREQEAKEKADREKADKEAKEKA----DREKADKDLQEKTPIKA-EGDDFGLGLP 454
             EE+ ++ +E KE A++E+  K A+++        K D    EK   K  E +       
Sbjct: 1784 DEEEAKKAEEEKEAAEKEEESKNAEDEKNKNTAENKKDTKEGEKGKSKDKEKEGEKEKCK 1843

Query: 455  SVPTHSVKLPPKEEELEEVKD--------EGKKGKE-------PGTTETDDREETERKNQ 499
                       K E      D        E  KG +       PG    D R   +R + 
Sbjct: 1844 RASPKDDVTSEKNEHHPRASDAAAALNAPETNKGMDTQNQKLAPGGRRPDPRGRRKRNSG 1903

Query: 500  DILDNSLLAG---KTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGES 556
                         +  T     A  +  AP A           Q + ++P  S     E+
Sbjct: 1904 ARPTGPRAKRANSRADTAQAAAAPTSWNAPIANQQN-PAAGHAQMRGQQPPMSQGSSDET 1962

Query: 557  DYAGIKLTKKEKELQEQ 573
                     ++K  +  
Sbjct: 1963 KVHQRNPLNRKKLEKRN 1979


>gnl|CDD|146543 pfam03962, Mnd1, Mnd1 family.  This family of proteins includes
           MND1 from S. cerevisiae. The mnd1 protein forms a
           complex with hop2 to promote homologous chromosome
           pairing and meiotic double-strand break repair.
          Length = 188

 Score = 31.4 bits (72), Expect = 1.5
 Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 13/106 (12%)

Query: 856 YWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTADLKELQTQLSRAKKYKESNDER-- 913
           YW       S  +QA  N    RL  L ++  +    + ELQ Q+ + K  +E  +ER  
Sbjct: 56  YW-------SFPSQAK-NKLKTRLEKLKKELEELKQRIAELQAQIEKLKVGREETEERTE 107

Query: 914 IVSFIRSEFEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVA 959
           ++  ++ + E+E+K+LK+ +E   K   +P + +K  ++T+    A
Sbjct: 108 LLEELK-QLEKELKKLKAELEKYEKN--DPERIEKLKEETKVAKEA 150


>gnl|CDD|37716 KOG2505, KOG2505, KOG2505, Ankyrin repeat protein [General function
           prediction only].
          Length = 591

 Score = 31.2 bits (70), Expect = 2.0
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 400 QEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSV 456
           QE +Q   ++ KEK   +KA K+ K++  + +  +   E +  + EGD   LG+P V
Sbjct: 505 QEREQA--EKKKEKKANQKAKKKLKKELRKAEEKQKYAEMS--EREGDGKLLGIPPV 557


>gnl|CDD|32449 COG2268, COG2268, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 548

 Score = 31.2 bits (70), Expect = 2.1
 Identities = 42/230 (18%), Positives = 80/230 (34%), Gaps = 36/230 (15%)

Query: 385 TSELKQATVLARANAQEEKQRREQE--------------------AKEKADREKADKEAK 424
            +E ++ T +A A A  + +  E E                    A+ +A+      E +
Sbjct: 227 ENEAEKETEIAIAEANRDAKLVELEVEQQPAGKTAEQTREVKIILAETEAEVAAWKAETR 286

Query: 425 EKADREK--ADKDLQEKTPIKAEGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKE 482
            +A++ +  A++ +QE+   +AE +             V L  +++E E    E      
Sbjct: 287 REAEQAEILAEQAIQEEK-AQAEQEVQHAKALEAREMRVGLIERQKETELEPQERSYFIN 345

Query: 483 PGTTETDDREETERKNQDILDNSLLAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQ 542
               +     + E K     + +   G         A  T +A  A+    +   +  +Q
Sbjct: 346 AAQRQ----AQEEAKA--AANIAEAIGAQAEAAVETARETEEAERAEQAALVAAAEAAEQ 399

Query: 543 REKPLA----SDIGVGESDYAGIKLT---KKEKELQEQEENLRVAEIIQQ 585
            +  +A    +     E+  A IK      +EK   E E    +AE IQ 
Sbjct: 400 EQVEIAVRAEAAKAEAEAQAAEIKAEAEAIREKGKAEAEAKRALAEAIQV 449


>gnl|CDD|114398 pfam05672, MAP7, MAP7 (E-MAP-115) family.  The organisation of
           microtubules varies with the cell type and is presumably
           controlled by tissue-specific microtubule-associated
           proteins (MAPs). The 115-kDa epithelial MAP
           (E-MAP-115/MAP7) has been identified as a
           microtubule-stabilising protein predominantly expressed
           in cell lines of epithelial origin. The binding of this
           microtubule associated protein is nucleotide
           independent.
          Length = 171

 Score = 30.8 bits (69), Expect = 2.2
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 14/102 (13%)

Query: 400 QEEKQRREQEAKEKADREK-ADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVPT 458
           QEE++RREQE +++ +RE+   + A+E+  RE+  +  +E+   + E             
Sbjct: 41  QEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKE------------- 87

Query: 459 HSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQD 500
              K   +EEE +E +++ +  K+    E   REE ER   +
Sbjct: 88  EKAKRKAEEEEKQEQEEQERIQKQKEEAEARAREEAERMRLE 129


>gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC
           superfamily) [Translation, ribosomal structure and
           biogenesis].
          Length = 807

 Score = 30.8 bits (69), Expect = 2.5
 Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 14/151 (9%)

Query: 457 PTHSVKLPPKEEELEEVKDE------GKKGKEPGTTETDDREETERKNQDILDNSLLAGK 510
                +    EE+LE+V+++      GKKGK  G       E+   +N+D  D   +A  
Sbjct: 2   GKKKERFDDDEEQLEKVQEKKPSKKGGKKGKRGGGGGDSSDEDVTTRNRDNEDLESIASS 61

Query: 511 THTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKP----LASDIGVGESDYAGIKLTKK 566
             +K +T     AK    +  KG ++    D+ EKP     A+D+   + D A  K    
Sbjct: 62  NQSKQQTAGKKQAK----KGKKGKRNNDWSDEDEKPEKSLPANDLDDEDDDEAAKKPQPS 117

Query: 567 EKELQEQEENLRVAEIIQQSRMQSEDLQEKA 597
           +K  + +++N   +  +     + ++++  A
Sbjct: 118 KKNKKNKKKNDDFSLDLDDLDNEEDEVEVVA 148


>gnl|CDD|34946 COG5384, Mpp10, U3 small nucleolar ribonucleoprotein component
           [Translation, ribosomal structure and biogenesis].
          Length = 569

 Score = 30.5 bits (68), Expect = 2.6
 Identities = 45/210 (21%), Positives = 79/210 (37%), Gaps = 17/210 (8%)

Query: 402 EKQRREQEAKEKADREKADKEAKEKA-DREKADKDLQEKTPIKAEGDD--FGLGLPSVPT 458
           E  ++  + K+  + E+ D+E  + A D+ K D    E+    AEG        L S   
Sbjct: 220 EPVKKHSDVKDPKEDEELDEEEHDSAMDKVKLDLFADEEDEPNAEGVGEASDKNLSSFEK 279

Query: 459 HSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLAGKTHTKNETP 518
             +++  + EELE+     K+ K  G      R +          NSLLA +   K    
Sbjct: 280 QQIEMDEQIEELEKELVAPKEWKYAGEVSAKKRPK----------NSLLAEELEFKQGAK 329

Query: 519 AIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKKEKELQEQEENLR 578
            +P +     ++ + I  ++ ++      A  I    +    I     E EL E +  L 
Sbjct: 330 PVPVSTKEDTESLEDIILQRIREGTFDDHAYRIREEVT----IADEIPEFELLESKSILS 385

Query: 579 VAEIIQQSRMQSEDLQEKAWDSYKEWKSLS 608
           +AE  +   MQ  D    + +  K    + 
Sbjct: 386 LAEEYEGDLMQIVDESALSEELDKGHNEIF 415


>gnl|CDD|39565 KOG4364, KOG4364, KOG4364, Chromatin assembly factor-I [Chromatin
           structure and dynamics].
          Length = 811

 Score = 30.9 bits (69), Expect = 2.6
 Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 3/152 (1%)

Query: 401 EEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVPTHS 460
            ++ R+  E +EK  +E+  +  +EK  +EK  K+ ++   IK E +             
Sbjct: 249 LKQLRKNMEEREKERKERERQVLEEKRLKEKEQKEEKKA--IKEENNKEKEETKLEKDIK 306

Query: 461 VKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLAGKTHTKNETPAI 520
            +   KE+E +  KDE +K K+    +    +  ERK +    +     K  +K      
Sbjct: 307 KQQKEKEKEEKRRKDEQEKLKKQEEKQ-KRAKIMERKEEKSRKSDEERKKLESKEVEAQE 365

Query: 521 PTAKAPPAQAHKGIQDKKPQDQREKPLASDIG 552
              K   A+  K  Q    +            
Sbjct: 366 LRKKRHEAEIGKFFQKIDNKFSTTCEATVSDI 397



 Score = 28.9 bits (64), Expect = 8.9
 Identities = 9/53 (16%), Positives = 32/53 (60%)

Query: 387 ELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEK 439
           E ++  +  +   ++E++  ++  KE+ ++EK + + ++   +++ +K+ +EK
Sbjct: 265 ERERQVLEEKRLKEKEQKEEKKAIKEENNKEKEETKLEKDIKKQQKEKEKEEK 317


>gnl|CDD|109486 pfam00430, ATP-synt_B, ATP synthase B/B' CF(0).  Part of the CF(0)
           (base unit) of the ATP synthase. The base unit is
           thought to translocate protons through membrane (inner
           membrane in mitochondria, thylakoid membrane in plants,
           cytoplasmic membrane in bacteria). The B subunits are
           thought to interact with the stalk of the CF(1)
           subunits. This domain should not be confused with the ab
           CF(1) proteins (in the head of the ATP synthase) which
           are found in pfam00006.
          Length = 132

 Score = 30.7 bits (70), Expect = 2.8
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 8/79 (10%)

Query: 368 KAETRLAYSTIANVANFTSELKQA-------TVLARANAQEEKQRREQEAKEKADREKAD 420
           +AE RL  +     A    +L QA          A+  AQ+ K+    EA++ A+R    
Sbjct: 41  EAEERLKQAAALL-AEAEQQLAQARAEASEIINNAKKEAQKLKEEILAEAQKDAERLLES 99

Query: 421 KEAKEKADREKADKDLQEK 439
             A+ + ++E+A  +L+++
Sbjct: 100 ARAEIEQEKEQALAELRQQ 118


>gnl|CDD|35385 KOG0163, KOG0163, KOG0163, Myosin class VI heavy chain
           [Cytoskeleton].
          Length = 1259

 Score = 30.4 bits (68), Expect = 3.3
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 396 RANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKD 435
           +    EEK+RRE+E K++A  E   K   E+  R+  +++
Sbjct: 938 KRREAEEKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEE 977


>gnl|CDD|32843 COG3027, COG3027, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 105

 Score = 30.3 bits (68), Expect = 3.6
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 3/85 (3%)

Query: 336 GVTYDQIKQLRDLASKVKADYHWAEIRHGNRFKAETRLAYSTIANVANFTSELKQATVLA 395
               +Q + LR  A  +  D    E++  N      RLA     NV +   +LK+     
Sbjct: 16  NCPEEQEEHLRQAARLL--DDKVRELKESNGVLDTERLAVMAALNVMHELLKLKEKLRDI 73

Query: 396 RANAQEEKQRREQEAKEKADREKAD 420
            A+  E++ R+  +A E A    A 
Sbjct: 74  EASL-EQRIRKLDQALENALTTLAQ 97


>gnl|CDD|37474 KOG2263, KOG2263, KOG2263, Methionine synthase II
           (cobalamin-independent) [Amino acid transport and
           metabolism].
          Length = 765

 Score = 30.0 bits (67), Expect = 4.0
 Identities = 35/141 (24%), Positives = 49/141 (34%), Gaps = 25/141 (17%)

Query: 347 DLASKVKADYHWAEIRHGNRFKAETRLAYSTIANVANFTSELKQATVLA--RANAQEEKQ 404
           DL ++ K D   AEI+    F A+       +  V      L    V A   ANA     
Sbjct: 337 DLINETKLD---AEIKSWLAFAAQK------VVEVNALAKALSGQKVEALFEANAAALAS 387

Query: 405 RREQ----EAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVPTHS 460
           RR          +            +A    A  D Q+K           L LP +PT +
Sbjct: 388 RRSSPRVTNEAVQKRVAAVKGSDHRRATPVSARLDAQQKK----------LNLPLLPTTT 437

Query: 461 VKLPPKEEELEEVKDEGKKGK 481
           +   P+ +EL  V+ E K  K
Sbjct: 438 IGSFPQTKELRRVRREFKAKK 458


>gnl|CDD|112104 pfam03274, Foamy_BEL, Foamy virus BEL 1/2 protein. 
          Length = 222

 Score = 29.8 bits (67), Expect = 4.4
 Identities = 12/49 (24%), Positives = 20/49 (40%)

Query: 567 EKELQEQEENLRVAEIIQQSRMQSEDLQEKAWDSYKEWKSLSPDEIKQR 615
            K  +E  EN    +   Q +    +     +  YKE +  +P +IK R
Sbjct: 8   LKVAEEPGENPGRPKRYTQIKTPPREPSCVTYHGYKEKEDKNPGDIKLR 56


>gnl|CDD|48213 cd03401, Band_7_prohibitin, Band_7_prohibitin. A subgroup of the
           band 7 domain of flotillin (reggie) like proteins. This
           subgroup group includes proteins similar to prohibitin
           (a lipid raft-associated integral membrane protein).
           Individual proteins of this band 7 domain family may
           cluster to form membrane microdomains which may in turn
           recruit multiprotein complexes. These microdomains in
           addition to being stable scaffolds may also be also
           dynamic units with their own regulatory functions.
           Prohibitin is a mitochondrial inner-membrane protein
           which may act as a chaperone for the stabilization of
           mitochondrial proteins.  Human prohibitin forms a
           heter-oligomeric complex with Bap-37 (prohibitin 2, a
           band 7 domain carrying homologue). This complex may
           protect non-assembled membrane proteins against
           proteolysis by the m-AAA protease. Prohibitin and Bap-37
           yeast homologues have been implicated in yeast longevity
           and, in the maintenance of mitochondrial morphology..
          Length = 196

 Score = 29.8 bits (67), Expect = 4.6
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 397 ANAQEEKQRREQEA-KEKADREKADKEAKEKADREKAD 433
             A E KQ  +QEA + K   EKA++E +    R + +
Sbjct: 155 TKAVEAKQVAQQEAERAKFVVEKAEQEKQAAVIRAEGE 192


>gnl|CDD|30678 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin
           homologs [Posttranslational modification, protein
           turnover, chaperones].
          Length = 291

 Score = 30.1 bits (67), Expect = 4.6
 Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 382 ANFTSELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTP 441
            +   E++ A +  +  A+ +K+    EA+ +A       E + +A    A+ + + +  
Sbjct: 169 IDPPEEVQAA-MEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEAEVI 227

Query: 442 IKAEGD 447
            +AE D
Sbjct: 228 ARAEAD 233


>gnl|CDD|37623 KOG2412, KOG2412, KOG2412, Nuclear-export-signal (NES)-containing
           protein/polyadenylated-RNA export factor [RNA processing
           and modification].
          Length = 591

 Score = 30.0 bits (67), Expect = 4.7
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 387 ELKQATVLARANAQE-EKQRREQEAKEKADREKADKEAKEKADREKAD-KDLQEKTPIKA 444
           E  +      A  QE EK R E+E +E+  +E  ++  KE  D +  + K  ++K  I+ 
Sbjct: 235 EELRQKEDEEAELQEQEKIRAEEEKQEEERKEAEEQAEKEVQDPKAHEEKLAEQKAVIEK 294

Query: 445 EGDDF 449
                
Sbjct: 295 VTTSS 299



 Score = 29.6 bits (66), Expect = 5.4
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 396 RANAQEEKQRREQEAKEKADREKA-----DKEAKEKADREKADKDLQEKTPIKAE 445
           R   QEE +++E E  E  ++EK       +E + K   E+A+K++Q+    + +
Sbjct: 230 RRAHQEELRQKEDEEAELQEQEKIRAEEEKQEEERKEAEEQAEKEVQDPKAHEEK 284



 Score = 29.3 bits (65), Expect = 6.4
 Identities = 11/39 (28%), Positives = 22/39 (56%)

Query: 401 EEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEK 439
           E K+R  QE   + + E+A+ + +EK   E+  ++ + K
Sbjct: 227 ERKRRAHQEELRQKEDEEAELQEQEKIRAEEEKQEEERK 265


>gnl|CDD|37283 KOG2072, KOG2072, KOG2072, Translation initiation factor 3, subunit
           a (eIF-3a) [Translation, ribosomal structure and
           biogenesis].
          Length = 988

 Score = 30.0 bits (67), Expect = 4.7
 Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 13/118 (11%)

Query: 394 LARANAQEEKQRREQEAK----EKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDF 449
            A+  A+E++Q RE E K    EK +RE      +++A R+K  K+  E+      G   
Sbjct: 591 EAQEQAKEQRQAREAEEKRLIEEKKEREAKRILREKEAIRKKELKERLEQLKQTEVGAKG 650

Query: 450 GLGLPSVPTHSVKLPP-KEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSL 506
           G          +     K  ++EE++ E K        E   R + + K  D L+ + 
Sbjct: 651 GKEKDLEDLEKLDADQIKARQIEELEKERK--------ELQSRLQYQEKKIDHLERAK 700


>gnl|CDD|37652 KOG2441, KOG2441, KOG2441, mRNA splicing factor/probable chromatin
           binding snw family nuclear protein [RNA processing and
           modification, Chromatin structure and dynamics].
          Length = 506

 Score = 29.7 bits (66), Expect = 5.1
 Identities = 14/59 (23%), Positives = 33/59 (55%)

Query: 387 ELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAE 445
           E++    L R  A++EK+ +EQ+ +E A + + ++   +    EK D++ + +  I+ +
Sbjct: 297 EVRMRAQLERKMAEKEKEEKEQKLRELAQKAREERGGPQTGAIEKEDREARTREEIRRD 355


>gnl|CDD|38785 KOG3578, KOG3578, KOG3578, Uncharacterized conserved protein
           [Function unknown].
          Length = 1058

 Score = 29.7 bits (66), Expect = 5.2
 Identities = 48/304 (15%), Positives = 93/304 (30%), Gaps = 42/304 (13%)

Query: 701 KNAVDAMSKAVEAGESSVRKHSFEVLSSKHQKSVIAVNNFIKEITHHTRRLVKEDPKRGK 760
              +  + +  E          F+    K +    A++   +         V E  K+  
Sbjct: 403 DEMLKEVKRLCE--HLKTIMLEFQ---QKKRDQTEAISKLPQWGKQKVIHDVSELKKKCI 457

Query: 761 SESYLS----DIRSELQKVNKTVMDIRIKLRLYGIFQDIPQEQPPLYTIISGSEKILQGD 816
                      +    +        I IK RL               T ++ +  IL+  
Sbjct: 458 RIKETITRDLYLLIRSKLAEDHFNGIEIKQRL---------------TFVNLALAILRAI 502

Query: 817 YTFPPLSSLDVQSKFD--SSYSKLFEIFYGDWTNNAIKEERYWTIYAFERSLKNQAHLNA 874
            T   L    ++S  D  S+ S+   +    W     K        A +  + + +   +
Sbjct: 503 ETVKRLELFLIKSVLDNWSTISEGSFLARQQWR----KHMLRILSEARKSYVSSVSKNIS 558

Query: 875 EVERLSGLAQQPSDSTADLKELQTQLSRAKKYKESNDERIVSFIRSEFER-EIKELKSVI 933
            +ER +   Q    S   + E Q     ++  K+S +E I S +    E      L++ +
Sbjct: 559 VIERATYRLQNLVSSFYHIAEAQAMFRGSRCIKQSANEMIPSRLVVLGEAYLRGRLETHL 618

Query: 934 EADAKENPNPNKNQKKLQKTREKLVAQLSSRLKELNIDNAYGLWNEYKEDFKASFEYPLG 993
            +          N+K  Q     L  +L +  ++L    A+        ++     Y L 
Sbjct: 619 SSP---------NRKPFQDLMNDL--ELFNSPRQLLQKAAFTGILLSHSNYLPHTFYNLT 667

Query: 994 TYEP 997
           TY  
Sbjct: 668 TYAK 671


>gnl|CDD|37351 KOG2140, KOG2140, KOG2140, Uncharacterized conserved protein
           [General function prediction only].
          Length = 739

 Score = 29.6 bits (66), Expect = 5.3
 Identities = 24/165 (14%), Positives = 49/165 (29%), Gaps = 15/165 (9%)

Query: 389 KQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDD 448
           K+++V     +    +R  +    +  RE + +   E+  +EK D D Q  T       +
Sbjct: 1   KESSVQPDKPSTSSDKRASRSQSPRESREVSRETENERKIKEKDDGDDQPGTL------N 54

Query: 449 FGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLA 508
                 +   H  +   +E   E       +               +R+      +    
Sbjct: 55  SYRERETSSGHERRKETRESRSERESPVRSRSPRRSARSPSRSPRRKRERSSSRKDEEKP 114

Query: 509 GKTHTKNETPAIPTAKA-----PPAQ---AHKGIQDKK-PQDQRE 544
                + +   +   +      PPA+       I DK   + QR 
Sbjct: 115 KPKKKELDPLDLLRTRTGGAYIPPAKLRMMQAQITDKNSIEYQRM 159


>gnl|CDD|34550 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
           and chromosome partitioning].
          Length = 420

 Score = 29.5 bits (66), Expect = 5.4
 Identities = 15/48 (31%), Positives = 17/48 (35%), Gaps = 2/48 (4%)

Query: 385 TSELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKA 432
            S LK    +A A A   K R    A E A       EAK   +  K 
Sbjct: 233 ESRLKN--EIASAEAAAAKAREAAAAAEAAAARARAAEAKRTGETYKP 278


>gnl|CDD|33091 COG3280, TreY, Maltooligosyl trehalose synthase [Carbohydrate
           transport and metabolism].
          Length = 889

 Score = 29.6 bits (66), Expect = 5.6
 Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 16/115 (13%)

Query: 800 PPLYTIISGSEKILQGDYTFPPLSSLDVQSKFD-----------SSYSKLFEIFYGDWTN 848
           P  Y ++   EKIL  D   P   ++D  + +D            +        Y  ++ 
Sbjct: 324 PDRYIVV---EKILAVDEPLPEDWAVDGTTGYDFLNELNGVLVDPAGESELTQLYLTFSG 380

Query: 849 NAIKEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTADLKELQTQLSRA 903
             + +E    +Y  +  +  Q +L  E+ RL+ L  + + + A   +    L RA
Sbjct: 381 RPV-DEYPALLYQAKLLVLVQ-NLAGELRRLARLLLRIASADAAANDFTVNLIRA 433


>gnl|CDD|35564 KOG0343, KOG0343, KOG0343, RNA Helicase [RNA processing and
           modification].
          Length = 758

 Score = 29.6 bits (66), Expect = 6.1
 Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 8/127 (6%)

Query: 385 TSELKQATVLARANAQEEKQRREQEAKEKADREKA-DKEAKEKADREKADKDLQEKTPIK 443
              L++A    +   +E+K+R +++ KEK   +   ++   E+A+ E+A+ + ++   + 
Sbjct: 635 GINLEKAKAELKEEDKEDKKRFKEKRKEKRREKLEKERRRAEEANEEEAEAEEEDGDFVD 694

Query: 444 AEGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILD 503
             G +    +  +P        KE + +E      +GK       D  +  E  N  + D
Sbjct: 695 WSGSEDDPDISWLPDPDKVRKKKESDSDEN-----EGKIQSALAADGIK--EVSNSSVED 747

Query: 504 NSLLAGK 510
              LA K
Sbjct: 748 VEPLALK 754


>gnl|CDD|37481 KOG2270, KOG2270, KOG2270, Serine/threonine protein kinase involved
           in cell cycle control [Signal transduction mechanisms,
           Cell cycle control, cell division, chromosome
           partitioning].
          Length = 520

 Score = 29.6 bits (66), Expect = 6.3
 Identities = 13/42 (30%), Positives = 28/42 (66%)

Query: 398 NAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEK 439
           + +E  +R+++ A+EK +R+K  KEAK +  + K  K ++++
Sbjct: 470 DIREHAKRKKKTAREKKERKKKVKEAKREKRKTKIPKHVKKR 511


>gnl|CDD|38255 KOG3045, KOG3045, KOG3045, Predicted RNA methylase involved in rRNA
           processing [RNA processing and modification].
          Length = 325

 Score = 29.6 bits (66), Expect = 6.3
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 463 LPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLAGKTHTK-----NET 517
           L    E LE+V++  KK  E  T+     E+ ++K +       L  K   +      E 
Sbjct: 6   LHVPAEALEKVENWLKKPSEKPTSSKTKEEKKKKKRKKGERK--LKAKKAAELKENVEEP 63

Query: 518 PAIPTAKAPPAQAHKGIQDKKPQDQREKP 546
           P    AK+ P +  K  +  + + ++EKP
Sbjct: 64  PLGSEAKSSPKENSKKKRRNETKKKKEKP 92


>gnl|CDD|146000 pfam03154, Atrophin-1, Atrophin-1 family.  Atrophin-1 is the
           protein product of the dentatorubral-pallidoluysian
           atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
           neurodegenerative disorder. It is caused by the
           expansion of a CAG repeat in the DRPLA gene on
           chromosome 12p. This results in an extended
           polyglutamine region in atrophin-1, that is thought to
           confer toxicity to the protein, possibly through
           altering its interactions with other proteins. The
           expansion of a CAG repeat is also the underlying defect
           in six other neurodegenerative disorders, including
           Huntington's disease. One interaction of expanded
           polyglutamine repeats that is thought to be pathogenic
           is that with the short glutamine repeat in the
           transcriptional coactivator CREB binding protein, CBP.
           This interaction draws CBP away from its usual nuclear
           location to the expanded polyglutamine repeat protein
           aggregates that are characteristic of the polyglutamine
           neurodegenerative disorders. This interferes with
           CBP-mediated transcription and causes cytotoxicity.
          Length = 979

 Score = 29.3 bits (65), Expect = 6.3
 Identities = 14/35 (40%), Positives = 26/35 (74%), Gaps = 1/35 (2%)

Query: 405 RREQEAKEKADREKADKEAKEKADREKADKDLQEK 439
           ++ +EA EKA RE A+++A+E+ +REK  +  +E+
Sbjct: 579 KKREEAVEKAKRE-AEQKAREEREREKEKEKERER 612



 Score = 28.9 bits (64), Expect = 8.6
 Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 396 RANAQEEKQRR-EQEAKEKADREKADKEAKEKADREKADK 434
           R  A E+ +R  EQ+A+E+ +REK  ++ +E+    +A++
Sbjct: 581 REEAVEKAKREAEQKAREEREREKEKEKEREREREREAER 620


>gnl|CDD|37477 KOG2266, KOG2266, KOG2266, Chromatin-associated protein Dek and
           related proteins, contains SAP DNA binding domain
           [Chromatin structure and dynamics].
          Length = 594

 Score = 29.4 bits (65), Expect = 6.4
 Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 7/132 (5%)

Query: 398 NAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVP 457
              E+K +   E  E A    A +  +EK   + ++   +E      E  +      S  
Sbjct: 36  GVDEDKSKDAAEKPEDASESMATETVEEKTPEDDSEAKTKESDAAPKEEKE---IKESEK 92

Query: 458 THSVK--LPPKEEELEEVKDEGK--KGKEPGTTETDDREETERKNQDILDNSLLAGKTHT 513
               +  +  K+EE EE +DE +  + +E    + D +E ++   +     +    K+  
Sbjct: 93  KDEKEESMDEKDEEKEEDEDEPEEDEKEEGEDDKEDKKEPSKDSEKRGKGATKSRPKSKA 152

Query: 514 KNETPAIPTAKA 525
             E    P    
Sbjct: 153 DEEKKPEPKTPF 164


>gnl|CDD|37784 KOG2573, KOG2573, KOG2573, Ribosome biogenesis protein -
           Nop56p/Sik1p [RNA processing and modification,
           Translation, ribosomal structure and biogenesis].
          Length = 498

 Score = 29.2 bits (65), Expect = 7.7
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 366 RFKAETRLAYSTIANVANFTSE-LKQATVLARANAQEEKQRREQEAKEKADREKADKEAK 424
           R + E RL +          S+ +K+A       +++     E  AKEK ++++  ++ K
Sbjct: 400 REQVEERLEFYETGEAPRKNSDVMKEAMEAYNGISRDSAPEDEASAKEKPEKDEEKEKKK 459

Query: 425 EKADREKADKDLQEKTPIKAEGDD 448
           EK  +++   +  EK    AE DD
Sbjct: 460 EKKGKKEKRAEEGEKKNNSAERDD 483


>gnl|CDD|37037 KOG1826, KOG1826, KOG1826, Ras GTPase activating protein
            RasGAP/neurofibromin [Defense mechanisms].
          Length = 2724

 Score = 29.2 bits (65), Expect = 8.5
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 7/62 (11%)

Query: 1007 DRLHPIYSVSKTIQKAGGDPSLMMDYEKVEPSDVMAGLPDDLAKRFKALLSWKGWHQLTP 1066
            D L  I  + +TI     DP  M  +      D +  L   L K FKA+       Q++ 
Sbjct: 1171 DLLEQIIKLVRTILDRDDDPIAMALF-STVIVDQIDELARVLVKIFKAI------IQMSK 1223

Query: 1067 AP 1068
              
Sbjct: 1224 MF 1225


>gnl|CDD|112811 pfam04012, PspA_IM30, PspA/IM30 family.  This family includes PspA
           a protein that suppresses sigma54-dependent
           transcription. The PspA protein, a negative regulator of
           the Escherichia coli phage shock psp operon, is produced
           when virulence factors are exported through secretins in
           many Gram-negative pathogenic bacteria and its homologue
           in plants, VIPP1, plays a critical role in thylakoid
           biogenesis, essential for photosynthesis. Activation of
           transcription by the enhancer-dependent bacterial
           sigma(54) containing RNA polymerase occurs through ATP
           hydrolysis-driven protein conformational changes enabled
           by activator proteins that belong to the large AAA(+)
           mechanochemical protein family. It has been shown that
           PspA directly and specifically acts upon and binds to
           the AAA(+) domain of the PspF transcription activator.
          Length = 220

 Score = 28.9 bits (65), Expect = 9.6
 Identities = 11/53 (20%), Positives = 25/53 (47%)

Query: 387 ELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEK 439
           + +QA     A  ++ +++ E++ ++    E   + A  K + E A + L E 
Sbjct: 41  KARQALAQVIARQKQLERKLEEQKEQAKKLENKARAALTKGNEELAREALAEI 93


>gnl|CDD|35720 KOG0499, KOG0499, KOG0499, Cyclic nucleotide-gated cation channel
           CNCG4 [Inorganic ion transport and metabolism, Signal
           transduction mechanisms].
          Length = 815

 Score = 28.8 bits (64), Expect = 9.7
 Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 12/103 (11%)

Query: 368 KAETRLAYSTIANVANFTSELKQATVLARANAQEEKQRREQEAKEKADREKADK-EAKEK 426
                    ++A +     E            +EE + R+   KE  D++K ++ + KE 
Sbjct: 688 TLLGLTGKMSLARLLKLKEEQAAQKKEKSEGGEEEGKERQDVQKENEDKQKDNEDKGKEN 747

Query: 427 ADREKADKDLQEKTPIKAEGDDFGLGLPSVPTHSVKLPPKEEE 469
            D++K               ++  L  P+    +V   P    
Sbjct: 748 EDKDKGR-----------TPEEKPLDPPTASPIAVLEEPHSVR 779


>gnl|CDD|38748 KOG3540, KOG3540, KOG3540, Beta amyloid precursor protein [General
           function prediction only].
          Length = 615

 Score = 28.9 bits (64), Expect = 9.7
 Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 381 VANFTSELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKE-KADREKADKDLQEK 439
           VANFT+E        +A  + E++ R++  K   + E+A+ +AK  KA+++  ++  Q+ 
Sbjct: 241 VANFTNEHAD---FQKAKMRLEEKHRKRMDKVMKEWEEAETQAKNPKAEKQALNQHFQKT 297


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.312    0.130    0.366 

Gapped
Lambda     K      H
   0.267   0.0574    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 14,634,427
Number of extensions: 788875
Number of successful extensions: 2958
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2733
Number of HSP's successfully gapped: 291
Length of query: 1246
Length of database: 6,263,737
Length adjustment: 105
Effective length of query: 1141
Effective length of database: 3,994,792
Effective search space: 4558057672
Effective search space used: 4558057672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.4 bits)