RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter asiaticus str. psy62] (1246 letters) >gnl|CDD|36247 KOG1029, KOG1029, KOG1029, Endocytic adaptor protein intersectin [Signal transduction mechanisms, Intracellular trafficking, secretion, and vesicular transport]. Length = 1118 Score = 40.1 bits (93), Expect = 0.004 Identities = 61/348 (17%), Positives = 137/348 (39%), Gaps = 48/348 (13%) Query: 385 TSELKQATVLARANAQEEKQRR---EQEAKEKADREKADKEAKEKADREKADKDLQEKTP 441 T E K+ + A+ E++R+ EQ+ +E+ + E+ ++E +EK +RE+ +++ + + Sbjct: 313 TFEDKRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLE 372 Query: 442 IKAEGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDI 501 ++ + + ++ E+E ++E +K KE E REE E++ Q Sbjct: 373 LEKQLE------------------RQREIERQREEERK-KEIERREA-AREELEKQRQLE 412 Query: 502 LDNS----LLAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQ-DQREKPLASDIGVGES 556 + + +L K + + K Q + + K Q + + + DI ++ Sbjct: 413 WERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKT 472 Query: 557 DYAGIK-------LTKKEKELQEQEENLRVAEIIQQSRMQSEDLQEKAWDSYKEWKSLSP 609 + + + + + +E ++ ++ + + + L++K + + S Sbjct: 473 EIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKS- 531 Query: 610 DEIKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAINHFLDNDFGYYRIHNFLSQWSPLGL 669 E++ +K + +D K T+ I+ F + N Sbjct: 532 -ELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVN--------SQ 582 Query: 670 MYEKDELHGVEAVYQKLDVLFRHCIENLRANKNAVDAMSKAVEAGESS 717 K+EL+ E KL +E L K A A + A +AG + Sbjct: 583 QLAKEELYKNE--RDKLKEAETKALE-LIGEKEAESAPASAADAGAPA 627 >gnl|CDD|37213 KOG2002, KOG2002, KOG2002, TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]. Length = 1018 Score = 38.4 bits (89), Expect = 0.013 Identities = 43/209 (20%), Positives = 82/209 (39%), Gaps = 40/209 (19%) Query: 388 LKQATV-LARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEG 446 LKQA +A+A ++E++RR ++ KE+ + KE +E +E+ +K +EK + E Sbjct: 819 LKQALEHVAQAQEEDEEERRAKQEKEEEALIE--KELEEARRKEEEEKARREKLEKQRE- 875 Query: 447 DDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSL 506 + + +L E+++E KK G DD + + + Sbjct: 876 ------------EYRERTKEILKLPEIEEEKKKSGGGGRKRGDDSDSDGERKK------- 916 Query: 507 LAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKK 566 GK K++ K P + K +K + R KP + I +++ Sbjct: 917 -GGKRKKKDKKK----RKRKPKKDSK---EKLSESDRRKPKSKAF---------ISTSER 959 Query: 567 EKELQEQEENLRVAEIIQQSRMQSEDLQE 595 + ++ + Q SR SE+ Sbjct: 960 SDDDVVKKAESDSDDDSQDSREASEESDR 988 >gnl|CDD|32878 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]. Length = 387 Score = 38.2 bits (88), Expect = 0.013 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 1/99 (1%) Query: 341 QIKQLRDLASKVKADYHWAEIRHGNRFKAETRLAYSTIANVANFTSELKQATVLARANAQ 400 + KQ + A K A+ + AE + A E +A A+A A+ Sbjct: 130 EQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAA-AEAKKKAEEAAKAAEEAKAKAE 188 Query: 401 EEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEK 439 +++ EA+ KA EKA EA+ KA EK + E+ Sbjct: 189 AAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEE 227 Score = 35.1 bits (80), Expect = 0.13 Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query: 388 LKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGD 447 ++A A A A+ EK + E A+EKA EK AK KAD+ A E+ A D Sbjct: 204 AEKAKAEAEAKAKAEK-KAEAAAEEKAAAEKKKAAAKAKADKAAAAAKAAERKAAAAALD 262 Query: 448 DFGLGLPS 455 D GL S Sbjct: 263 DIFGGLSS 270 Score = 33.2 bits (75), Expect = 0.46 Identities = 31/142 (21%), Positives = 49/142 (34%) Query: 389 KQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDD 448 KQA + E+KQ+ EQ K A+++K + AK KA E A + KAE Sbjct: 118 KQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAA 177 Query: 449 FGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLA 508 + K E + E K + + + + E + + + A Sbjct: 178 KAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAA 237 Query: 509 GKTHTKNETPAIPTAKAPPAQA 530 K A A+ A A Sbjct: 238 AKAKADKAAAAAKAAERKAAAA 259 >gnl|CDD|38298 KOG3088, KOG3088, KOG3088, Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]. Length = 313 Score = 37.6 bits (87), Expect = 0.022 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 12/94 (12%) Query: 546 PLASDIGVGESDYAGIKLTKKEKELQEQEENL--RVAEIIQQSR-MQSEDL--QEKAWDS 600 DI + L KK+ EL +++E L + E+ ++ R + + +E W Sbjct: 45 GPTVDIPLDSPSTQAKDLAKKQAELLKKQEELRRKEQELDRRERALARAGIVIRENNWPP 104 Query: 601 YKEWKSLSP-------DEIKQRFQKYAKVFYRSY 627 + + P +EI FQK K Y + Sbjct: 105 LPSFIPVFPCFYQDISNEIPVEFQKLVKRAYYLW 138 >gnl|CDD|36371 KOG1156, KOG1156, KOG1156, N-terminal acetyltransferase [Chromatin structure and dynamics]. Length = 700 Score = 36.1 bits (83), Expect = 0.065 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 9/101 (8%) Query: 398 NAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVP 457 + EEK + + K++ ++KA KEAK+K D++K + Q P+ + D FG L Sbjct: 582 MSDEEK---KIKKKQRKAKKKAKKEAKKKKDKKKKEAKSQSGKPVDIDEDPFGEKLLKTE 638 Query: 458 THSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKN 498 P EE + + + KGKE G T E RK Sbjct: 639 D------PLEEARKFLPNLQHKGKEKGETYILSFELYYRKG 673 >gnl|CDD|34868 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]. Length = 4600 Score = 35.1 bits (80), Expect = 0.12 Identities = 47/217 (21%), Positives = 85/217 (39%), Gaps = 20/217 (9%) Query: 399 AQEEKQRREQEAKEK-ADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVP 457 +E+ EQ++ E+ A ++D +KE ++ DKD QEK + DD G+ Sbjct: 3912 NEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGI------ 3965 Query: 458 THSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLAG---KTHTK 514 ++ P +E + E + P + D++E K+ D+ D + A K Sbjct: 3966 DDEIQ-PDIQENNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEAD 4024 Query: 515 NETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKKEKELQEQE 574 E P P + + + + QD LA D D E+ +QE E Sbjct: 4025 AEKDE-PMQDEDPLEENNTLDEDIQQDD-FSDLAEDDEKMNED-------GFEENVQENE 4075 Query: 575 ENLRVAEIIQQSRMQSEDLQEKAWDSYKEWKSLSPDE 611 E+ + Q E +++A D++ + + S Sbjct: 4076 ESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAKSTFA 4112 >gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family consists of several Borrelia P83/P100 antigen proteins. Length = 489 Score = 35.0 bits (80), Expect = 0.13 Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 7/112 (6%) Query: 389 KQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDD 448 + T L +QE+ +R +Q +E ++ +A++KAD + + D Q + + + Sbjct: 198 RDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEA 257 Query: 449 FGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQD 500 L P+ + PKE+ ++V + K+ E E +E K +D Sbjct: 258 KNLPKPADTSS-----PKED--KQVAENQKREIEKAQIEIKKNDEEALKAKD 302 Score = 30.7 bits (69), Expect = 2.7 Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 23/146 (15%) Query: 389 KQATVLARANAQEEKQRREQEAKEKADREKADK----EAKEKADREKADKDLQEKTPIKA 444 K A +KQR E K++ + KE + K EK I+ Sbjct: 231 KAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEI 290 Query: 445 EGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDN 504 + +D L K+ + ++K E K ++ D E ++K + + ++ Sbjct: 291 KKNDEEA-----------LKAKDHKAFDLKQESKASEK---EAEDKELEAQKKREPVAED 336 Query: 505 SLLAGKTHTKNETPAIPTAKAPPAQA 530 TK + A PT+ A Sbjct: 337 L-----QKTKPQVEAQPTSLNEDAID 357 >gnl|CDD|36359 KOG1144, KOG1144, KOG1144, Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]. Length = 1064 Score = 35.0 bits (80), Expect = 0.15 Identities = 37/216 (17%), Positives = 84/216 (38%), Gaps = 15/216 (6%) Query: 382 ANFTSELKQATVLARANAQEEKQRREQEAKEKADREKADKEAK-EKADREKADKDLQEKT 440 A + ++A + +E+++++E A A++ KE K EK+ E A+ + +E Sbjct: 145 AGEKEKKEKAAAKKKKEKKEKEKKKEDSAAAAAEKSVEAKEEKKEKSVTEPAEPEKKEAK 204 Query: 441 PIKAEGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQD 500 KAE P + + +E ++ K+ +E ++ EE R+ ++ Sbjct: 205 GKKAEK--------KKPKGVRAMQEALAKRQEEEERQKREEEE-RLRREEEEERRREEEE 255 Query: 501 ILDNSLLAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAG 560 + K + E A+ A + + + ++ LAS G+ +D G Sbjct: 256 AQEEEAKEKKKEKEKEKKERKKAEGKLLTAKQKEEAALAEAFLKQLLASGGGLPVADKDG 315 Query: 561 IK-----LTKKEKELQEQEENLRVAEIIQQSRMQSE 591 K+K+ +++ + E + + + Sbjct: 316 DSKKRPIYANKKKKARQKGNDRTSVEKLGEVEAKEN 351 Score = 34.2 bits (78), Expect = 0.24 Identities = 44/217 (20%), Positives = 82/217 (37%), Gaps = 24/217 (11%) Query: 394 LARANAQEEKQRREQEAKEKADREKADKE-----AKEKADREKADKDLQEKTPIKAEGDD 448 LA+ +EE+Q+RE+E + + + E+ + +E+A +K +K+ ++K KAEG Sbjct: 223 LAKRQEEEERQKREEEERLRREEEEERRREEEEAQEEEAKEKKKEKEKEKKERKKAEG-- 280 Query: 449 FGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGK--EPGTTETDDREETERKNQDILDNSL 506 KL +++ E E + G ++ + K + I N Sbjct: 281 -------------KLLTAKQKEEAALAEAFLKQLLASGGGLPVADKDGDSKKRPIYANKK 327 Query: 507 LAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKK 566 + + T + + H G D D E L D E + + ++ Sbjct: 328 KKARQKGNDRTSVEKLGEVEAKENHAG--DVGSVDTEEVDLEEDSNTDEKEGTPEDVDQE 385 Query: 567 EKELQEQEENLRVAEIIQQSRMQSEDLQEKAWDSYKE 603 E E ++ + I E+LQE+ KE Sbjct: 386 EGEEEDDWDAKVDLAIDGDDDDDEEELQEEVDKELKE 422 Score = 31.5 bits (71), Expect = 1.3 Identities = 40/210 (19%), Positives = 71/210 (33%), Gaps = 23/210 (10%) Query: 401 EEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVPTHS 460 E E D E+ D++AK+ + + ++K +K P Sbjct: 18 SEALLAELLVATDKDDEEEDEDAKKASTLAFSGAKKKKKKGLKLSSPGDDSEELEEPEGK 77 Query: 461 VKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLAGKTHTKNETPAI 520 K K E +E K + KK K+ + E+ K LLA Sbjct: 78 TKKTAKVEVVETGKSKKKKKKKKKKKGKAEEEDDLDK--------LLASLGEK------- 122 Query: 521 PTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKKEKELQEQEENLRVA 580 + K ++ +P++ A + E A K KKEKE ++++ A Sbjct: 123 -----DEPASEKEKKEAQPENVAPVEAAGEKEKKEKAAAKKKKEKKEKEKKKEDSAAAAA 177 Query: 581 EIIQQSRMQSEDLQEKAWDSYKEWKSLSPD 610 E ++ E+ +EK+ E + Sbjct: 178 EKSVEA---KEEKKEKSVTEPAEPEKKEAK 204 Score = 31.5 bits (71), Expect = 1.5 Identities = 36/203 (17%), Positives = 74/203 (36%), Gaps = 6/203 (2%) Query: 395 ARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLP 454 R +EE++R E+EA+E+ +EK ++ KEK +R+KA+ L T + E Sbjct: 241 LRREEEEERRREEEEAQEEEAKEKKKEKEKEKKERKKAEGKLL--TAKQKEEAALAEAFL 298 Query: 455 SVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLAGKTHTK 514 S P ++ + K + + R++ + + A + H Sbjct: 299 KQLLASGGGLPVADKDGDSKKRPIYANK----KKKARQKGNDRTSVEKLGEVEAKENHAG 354 Query: 515 NETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKKEKELQEQE 574 + ++ ++ P+D ++ + I + E + QE Sbjct: 355 DVGSVDTEEVDLEEDSNTDEKEGTPEDVDQEEGEEEDDWDAKVDLAIDGDDDDDEEELQE 414 Query: 575 ENLRVAEIIQQSRMQSEDLQEKA 597 E + + ++ SE E A Sbjct: 415 EVDKELKEAEEEEEDSEKPTEDA 437 >gnl|CDD|145291 pfam02029, Caldesmon, Caldesmon. Length = 807 Score = 34.5 bits (78), Expect = 0.20 Identities = 72/397 (18%), Positives = 151/397 (38%), Gaps = 19/397 (4%) Query: 387 ELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEG 446 ELK + A EE E+ E + E A E KE+A+ E+A + +EK IKAE Sbjct: 228 ELKNGAINAEEPKDEEA--MEEGEDEISHHEDAADEDKEEAEAERAKLEAEEKERIKAEE 285 Query: 447 DDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSL 506 D + K +E E + ++E + +E + ++ ++ + + Sbjct: 286 DKKAADEKAKAEAEEKAAAEERERAKAEEEKRAAEERERAKAEEEKKAAEERERAKAEE- 344 Query: 507 LAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKK 566 K + A KA +A ++KK ++R++ A + +++ ++ Sbjct: 345 -EKKAAEERAKIAEEEKKAAEERAKIAEEEKKAAEERQRAKAEEEEKAKAEEQERAKAEE 403 Query: 567 EKELQEQEENLRVAEI--------IQQSRMQSEDLQEKAWDSYKEWKSLSPDEIKQRFQK 618 EK+ E+E + ++ +++ + Q + Q +E K + K++ + Sbjct: 404 EKKAAEEEAKIEAEKLEEKIEGKKMEEKKAQEDKAQAALLKKQEEDKEAKVEAKKEKLPE 463 Query: 619 YAKVFYRSYSPVDGSYKGTQESDKAINHFLDNDFGYYRIHNFLSQWSPLGLMYEKDELHG 678 K ++ D + + + F+D G+ +Q M K L Sbjct: 464 DLKPTFKKDEIKDEKIDKDKAPKEEMKSFMDRKKGFPEQK---AQNGEREFMTHK--LKH 518 Query: 679 VEAVYQKLDVLFRHCIENLRANKNA-VDAMSKAVEAGESSVRKHSFEVLSSKHQKSVIAV 737 E + + + NA + + FE L K Q++ + + Sbjct: 519 TENAFGRPGGRASVDTKEAEGAANAEAGKRLEELRRRRGETESEEFEKLKEKQQEAALEL 578 Query: 738 NNFIKEITHHTRRLVKEDPKRGKSESYLSDIRSELQK 774 + +K+ R++++E+ ++ K E IR E +K Sbjct: 579 DE-LKKKREERRKILEEEEQKKKQEEADRKIREEEEK 614 >gnl|CDD|37135 KOG1924, KOG1924, KOG1924, RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms, Cytoskeleton]. Length = 1102 Score = 34.2 bits (78), Expect = 0.23 Identities = 14/50 (28%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Query: 379 ANVANFTSELKQATVLA-RANAQEEKQRREQEAKEKADREKADKEAKEKA 427 A++ F + +A + +EEK+RR + AKE++++E+ +++ ++KA Sbjct: 980 ADIRTFRNAFLEAVAENEKRREEEEKERRAKLAKEQSEQERLERQQRKKA 1029 >gnl|CDD|38799 KOG3592, KOG3592, KOG3592, Microtubule-associated proteins [Cytoskeleton]. Length = 934 Score = 34.0 bits (77), Expect = 0.26 Identities = 39/200 (19%), Positives = 62/200 (31%), Gaps = 22/200 (11%) Query: 387 ELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQ--EKTPIKA 444 LK+ + + E + ++ +K D + E K +A L TP +A Sbjct: 367 ALKKGAPAKPEDKKAEAIKPKKAVGKKQDGAPSKPEVKVINKGARAPPSLSSGPATPPEA 426 Query: 445 E----------GDDFGLGL-------PSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTE 487 E D L S P V +PP E + KE G Sbjct: 427 ERRKPESVAVVLPDLELKPFPEDFNKGSAPLAIVVIPPTPEVPRLEESHKTHPKESGVPA 486 Query: 488 TDDREETERKNQDILDNSLLAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPL 547 D + E K+ + + T TP PT + A + + + P Sbjct: 487 EDGKAPLEVKDVRNAEA--VPDAIPTPVTTPKKPTPRPEAAVGGGSEETEIDESLDASPE 544 Query: 548 ASDIGVGESDYAGIKLTKKE 567 D V +D A +K + Sbjct: 545 PLD-PVELTDEAELKPPTPD 563 >gnl|CDD|36151 KOG0933, KOG0933, KOG0933, Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics, Cell cycle control, cell division, chromosome partitioning]. Length = 1174 Score = 33.8 bits (77), Expect = 0.33 Identities = 22/102 (21%), Positives = 40/102 (39%) Query: 867 KNQAHLNAEVERLSGLAQQPSDSTADLKELQTQLSRAKKYKESNDERIVSFIRSEFEREI 926 K L E++ L +Q+ D L+ +L+ +K E N+ + E E+ Sbjct: 691 KELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEV 750 Query: 927 KELKSVIEADAKENPNPNKNQKKLQKTREKLVAQLSSRLKEL 968 +E + I+ + L+K + A RLK+L Sbjct: 751 EESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDL 792 >gnl|CDD|146667 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809 Score = 33.4 bits (77), Expect = 0.37 Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 15/107 (14%) Query: 399 AQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVPT 458 A+EE +R ++ E+ R + ++E E+ + K D + + D+FGLG Sbjct: 264 AKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQG---- 319 Query: 459 HSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNS 505 + +EE+ + +DE + DD E E ++ D+ D+ Sbjct: 320 --EEDEEEEEDGVDDEDE---------EDDDDDLEEEEEDVDLSDDE 355 >gnl|CDD|36509 KOG1295, KOG1295, KOG1295, Nonsense-mediated decay protein Upf3 [RNA processing and modification]. Length = 376 Score = 33.5 bits (76), Expect = 0.39 Identities = 51/262 (19%), Positives = 92/262 (35%), Gaps = 25/262 (9%) Query: 350 SKVKADYHWAEIRHGNRFKAETRLAYSTIANVANFTSELKQATVLARANAQEEKQRREQE 409 + + EI + A ++ ++ KQ R +EE++RRE E Sbjct: 106 ASKLKETLLGEIEGDTKSLAFKKVTPL----LSFIKQADKQRI---RKLRREERRRREIE 158 Query: 410 AKE-----KADREKADKEAKEKADREKADKDLQ--------EKTPIKAEGDDFGLGLPSV 456 KE K D+EK + K+ ++K DKD +K K + S Sbjct: 159 EKENREEVKKDKEKESGKRKDTDKQKKIDKDEPRIEKEDENDKPFEKGKKILKENLKDSR 218 Query: 457 PTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLAGKTHTKNE 516 + SV K+ E K G E E + T RK + + K+E Sbjct: 219 QSLSVPATSKKAESSLEKPA-TSGTETREAERKEERSTPRKESNKEKRQKNKNRPKKKHE 277 Query: 517 TPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKKEKELQEQEEN 576 K P K +K+ + R K + G + + ++ +KE+ + Sbjct: 278 EKE-SDGKRKPRSKKK---EKRERRDRGKKYTENRGFTQPEDVYKEVHRKERTSMKDRPA 333 Query: 577 LRVAEIIQQSRMQSEDLQEKAW 598 L++ ++R ++ + W Sbjct: 334 LQLYCPGARARKRACTERLPWW 355 >gnl|CDD|34166 COG4499, COG4499, Predicted membrane protein [Function unknown]. Length = 434 Score = 33.0 bits (75), Expect = 0.48 Identities = 13/42 (30%), Positives = 25/42 (59%) Query: 398 NAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEK 439 +++ +EA+ KA EK +E EK +E+AD+D +++ Sbjct: 386 GEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKR 427 Score = 29.9 bits (67), Expect = 4.5 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Query: 386 SELKQATVLARANAQE---EKQRREQEAKEKADREKADKEAKEKADREKADKDLQEK 439 +L+ T E ++ + +EK +E+ +K+ KE+AD +K + E+ Sbjct: 376 KKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDER 432 >gnl|CDD|38264 KOG3054, KOG3054, KOG3054, Uncharacterized conserved protein [Function unknown]. Length = 299 Score = 33.1 bits (75), Expect = 0.57 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 15/108 (13%) Query: 396 RANAQEEKQRREQEAKEKADRE-KADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLP 454 A + +++RR Q E+A+RE + KE E+A+R+K ++ L E+ +K E Sbjct: 108 EAKLEAKQERRAQREAEEAEREERKRKEDYEEAERKKDEERLAEEAELKEE--------- 158 Query: 455 SVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDIL 502 + KEEE + +E K K + E + EE + + QD L Sbjct: 159 -----EKERKAKEEEARKEHEEYLKMKAAFSVEEEGTEEVQGEEQDNL 201 >gnl|CDD|39013 KOG3809, KOG3809, KOG3809, Microtubule-binding protein MIP-T3 [Cytoskeleton]. Length = 583 Score = 32.4 bits (73), Expect = 0.75 Identities = 32/181 (17%), Positives = 60/181 (33%), Gaps = 17/181 (9%) Query: 385 TSELKQATVLARANAQEEKQRREQEAKEKADRE-KADKEAKEKADREKADKDLQEKTPIK 443 T E K+ ++ +EK ++ ++KE+ E ++ ++ EK+ + K + K K Sbjct: 175 THERKEKEEKKKSAEPKEKDKKSSKSKERPKSEDRSSRKNSEKSSKSKKKEKSTTKEKPK 234 Query: 444 AEGDDFGLGLPSVPTHSVKLPPKEE----ELEEVKDEGKKGKEPGTT---ETDDRE---- 492 E D+ E K E G ETD E Sbjct: 235 KESDNLSQSKDPSEREFSTQDSMSAVNGDAPEPEMVTPNKENEAGVRPVQETDTHEISEP 294 Query: 493 ETERKNQDILDNSLLAGKTHTKNETPAIPT--AKAPPAQAHKGIQDKKPQDQREKPLASD 550 E ++ L + + T +PT + + + +RE PL + Sbjct: 295 EVISNSESDSSAQSL---SIRQPVTSPLPTESQMGESPRMIEPEDRPSGEAKREVPLTRE 351 Query: 551 I 551 + Sbjct: 352 M 352 >gnl|CDD|145380 pfam02194, PXA, PXA domain. This domain is associated with PX domains pfam00787. Length = 182 Score = 32.2 bits (74), Expect = 0.82 Identities = 21/102 (20%), Positives = 47/102 (46%), Gaps = 15/102 (14%) Query: 22 SEDVAKTLTSIQDNIKHLREFIIAWSSDLNPHKDRYD-------YIVGPIEQRLKKVSER 74 S +V L + D I +R+F+ +W S ++P ++ + + + + QRL++V Sbjct: 1 SPEVDAALEELIDLI--IRDFVQSWYSRISPDEEFPNEIRQVLRHAIRELSQRLRRV--D 56 Query: 75 YERVVSRDLTLVIEAGLKDLKE----VGDTLKRLAETGEVIL 112 +++ L ++ L+ +E V + E+ E+ L Sbjct: 57 LADLLTDRLLPLLTKHLESFREAEAAVRNLSSSSTESEELEL 98 >gnl|CDD|38102 KOG2891, KOG2891, KOG2891, Surface glycoprotein [General function prediction only]. Length = 445 Score = 32.2 bits (72), Expect = 0.84 Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 1/98 (1%) Query: 385 TSELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKA 444 L+ A + R ++EKQ EQ A+E+ RE+ +E + ++E+ + + E+ + Sbjct: 315 DKHLEDAEIKKRQLERQEKQELEQMAEEEKKREEEAEERQRAEEKEQKEAEELERARKRE 374 Query: 445 EGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKE 482 EG L + + K++E E++K E +K KE Sbjct: 375 EGVKL-LKFEFEKIEAREERRKQKEEEKLKAEEQKIKE 411 >gnl|CDD|37454 KOG2243, KOG2243, KOG2243, Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]. Length = 5019 Score = 32.0 bits (72), Expect = 1.1 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 4/67 (5%) Query: 395 ARANAQEEKQRREQEAK---EKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGL 451 A+A A EE+ E E K EKAD E +KE K K + E+A+ E K + + Sbjct: 4464 AKAQAAEEEAAEEAEGKSEPEKADGEDGEKEDKAK-EEEQAEYLWDEGKKKKKQLCGHKV 4522 Query: 452 GLPSVPT 458 P Sbjct: 4523 EEPEAFE 4529 >gnl|CDD|39983 KOG4786, KOG4786, KOG4786, Ubinuclein, nuclear protein interacting with cellular and viral transcription factors [Transcription, Signal transduction mechanisms]. Length = 1136 Score = 31.8 bits (71), Expect = 1.1 Identities = 30/157 (19%), Positives = 61/157 (38%), Gaps = 8/157 (5%) Query: 388 LKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKD-LQEKTPIKAEG 446 LK+ + +++ ++ EAK+ +R K ++E +E+ +R++ +K +E+ I Sbjct: 692 LKKLEEKLKKEKEKQAEKDRIEAKKFEERMKKEQEKQEEKERKEREKREEKERKEIMERK 751 Query: 447 DDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSL 506 + P ++++ E + +K T + R R + + Sbjct: 752 KREEDDRIAAKLQLSCQAPLDKKMPEAEQSKRKEHSLPRTSAEARRAVPRPGPIKMMRA- 810 Query: 507 LAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQR 543 + E P PPA +GIQ K P D Sbjct: 811 -QQLQRRQEEAPP-----PPPANHLQGIQVKPPVDHS 841 >gnl|CDD|35383 KOG0161, KOG0161, KOG0161, Myosin class II heavy chain [Cytoskeleton]. Length = 1930 Score = 31.7 bits (72), Expect = 1.2 Identities = 106/598 (17%), Positives = 216/598 (36%), Gaps = 80/598 (13%) Query: 399 AQEEKQRREQEAKEKADREKADKEAKEKAD-REKADKDLQEKTPIKAEGDDFGLGLPSVP 457 + E++ R +E + + +E+ K ++ + EK K L+EK ++ + + Sbjct: 834 TKTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQ----------LQ 883 Query: 458 THSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLAGKTHTKNET 517 L EE LE ++ E ++ ++ + EE E KN ++ + + + Sbjct: 884 AEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKE 943 Query: 518 PAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKKEKELQEQEENL 577 + K +K + + K L +I + + + KL+K++KEL+E+ L Sbjct: 944 ----QLEELELTLQKLELEKNAAENKLKNLEEEINSLDENIS--KLSKEKKELEERIREL 997 Query: 578 RVAEIIQQSRMQSEDLQEKAWDSYKEWKSLSPDEIKQRF---QKYAKVFYRSYSPVDGSY 634 Q +Q+E+ + K+ + K D+++ ++ ++ ++G Sbjct: 998 -------QDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGEL 1050 Query: 635 KGTQESDKAIN---HFLDNDFG--YYRIHNFLSQWSPLGLMYEK---------------- 673 K QES + + LDN + S+ + Sbjct: 1051 KDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELE 1110 Query: 674 DELHGVEAVYQKLDVLFRHCIENLRANKNAVDAMSKAVEAGESSVRKHSFEV--LSSKHQ 731 +EL A K + R E L K ++ A +K EV L + Sbjct: 1111 EELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLE 1170 Query: 732 KSVIAVNNFIKEITHHTRRLVKEDPKRGKSESYLSDIRSELQKVNKTVMDIRIKLRLYGI 791 + + I+E+ + E L + +LQK + + K L Sbjct: 1171 EETLDHEAQIEELRKKHADSLAE----------LQEQLEQLQKDKAKL--EKEKSDLQRE 1218 Query: 792 FQDIPQEQPPLYTIISGSEKILQGDYTFPPLSSLDVQSKFDSSYSKLFEIFYGDWTNNAI 851 D+ E L + S + + + D S ++Q K D ++ Sbjct: 1219 IADLAAE---LEQLSSEKKDLEKKDKKLEAQLS-ELQLKLDEQERLRNDL--------TA 1266 Query: 852 KEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTADLKELQTQLSRAKKYKESND 911 K R E ++ AE + LS L++ + L+EL+ QL + K + + Sbjct: 1267 KRSRLQN----ENEELSRQLEEAEAK-LSALSRDKQALESQLEELKRQLEEETREKSALE 1321 Query: 912 ERIVSFIRSEFEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQLSSRLKELN 969 + E + ++L+ EA + +K +L + ++K ++ RL+EL Sbjct: 1322 NALRQL-EHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELE 1378 Score = 30.2 bits (68), Expect = 3.9 Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 23/122 (18%) Query: 858 TIYAFERSLKNQAHLNAE--------VERLSGLAQQPSDSTADLKELQTQLSRAKKYKES 909 + A E+ K L AE L ++ + +L++L+ L + E Sbjct: 1429 AVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLE- 1487 Query: 910 NDERIVSFIRSEFEREIKELKSVIEADAKENPNPNKNQKKLQKTR---EKLVAQLSSRLK 966 E RE K L IE ++ K +L+K + E+ +L + L+ Sbjct: 1488 -----------ELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALE 1536 Query: 967 EL 968 EL Sbjct: 1537 EL 1538 >gnl|CDD|34791 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]. Length = 1077 Score = 31.7 bits (71), Expect = 1.2 Identities = 14/53 (26%), Positives = 25/53 (47%) Query: 386 SELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQE 438 E+K V R QEEK+R E + K + ++ +E+ R+ + +E Sbjct: 1015 HEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKE 1067 >gnl|CDD|30368 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 577 Score = 31.8 bits (72), Expect = 1.3 Identities = 24/140 (17%), Positives = 50/140 (35%), Gaps = 13/140 (9%) Query: 112 LSDKSDRLLCRFMDMVETEDEHKINKQ------VRDALESAGFDLESTQENIRKVESALI 165 + LL + + +V + K++ + + D L+ AG E + + Sbjct: 361 YGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEEKEEKNEEIA 420 Query: 166 NNNMKDAFRFLELAQKSKETADSHIIEAIDVGTKLKENTPPT---TFTSISKVLLKSNNM 222 DA R+ +L++ D + D + NT P I +L K+ Sbjct: 421 EVVGIDAVRYADLSRS----RDKDYVFDWDKALSFEGNTAPYVQYAHARICSILRKAGED 476 Query: 223 QDVVFTKIKEVVKKHVNAEL 242 + + T+ ++ + EL Sbjct: 477 ELDLSTEADALLTELEEREL 496 >gnl|CDD|147216 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus protein SURF-6 is shown to be a component of the nucleolar matrix and has a strong binding capacity for nucleic acids. Length = 208 Score = 31.5 bits (72), Expect = 1.3 Identities = 11/51 (21%), Positives = 26/51 (50%) Query: 395 ARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAE 445 + + + RR + + K +++ KEAK+K D +K + + + K++ Sbjct: 1 PSSREELLEARRRKREQRKERKKEKRKEAKKKEDAQKEEAEEVKNEENKSK 51 Score = 29.2 bits (66), Expect = 8.1 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Query: 396 RANAQEEKQRREQEAKE--KADREKADKEAKEKADREKADKDLQEKTPIKAE 445 R E ++R+ ++ KE K R++A K+ + + + K+ + K+ KA Sbjct: 4 REELLEARRRKREQRKERKKEKRKEAKKKEDAQKEEAEEVKNEENKSKKKAA 55 >gnl|CDD|38804 KOG3598, KOG3598, KOG3598, Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]. Length = 2220 Score = 31.6 bits (71), Expect = 1.4 Identities = 36/197 (18%), Positives = 59/197 (29%), Gaps = 24/197 (12%) Query: 400 QEEKQRREQEAKEKADREKADKEAKEKA----DREKADKDLQEKTPIKA-EGDDFGLGLP 454 EE+ ++ +E KE A++E+ K A+++ K D EK K E + Sbjct: 1784 DEEEAKKAEEEKEAAEKEEESKNAEDEKNKNTAENKKDTKEGEKGKSKDKEKEGEKEKCK 1843 Query: 455 SVPTHSVKLPPKEEELEEVKD--------EGKKGKE-------PGTTETDDREETERKNQ 499 K E D E KG + PG D R +R + Sbjct: 1844 RASPKDDVTSEKNEHHPRASDAAAALNAPETNKGMDTQNQKLAPGGRRPDPRGRRKRNSG 1903 Query: 500 DILDNSLLAG---KTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGES 556 + T A + AP A Q + ++P S E+ Sbjct: 1904 ARPTGPRAKRANSRADTAQAAAAPTSWNAPIANQQN-PAAGHAQMRGQQPPMSQGSSDET 1962 Query: 557 DYAGIKLTKKEKELQEQ 573 ++K + Sbjct: 1963 KVHQRNPLNRKKLEKRN 1979 >gnl|CDD|146543 pfam03962, Mnd1, Mnd1 family. This family of proteins includes MND1 from S. cerevisiae. The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair. Length = 188 Score = 31.4 bits (72), Expect = 1.5 Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 13/106 (12%) Query: 856 YWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTADLKELQTQLSRAKKYKESNDER-- 913 YW S +QA N RL L ++ + + ELQ Q+ + K +E +ER Sbjct: 56 YW-------SFPSQAK-NKLKTRLEKLKKELEELKQRIAELQAQIEKLKVGREETEERTE 107 Query: 914 IVSFIRSEFEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVA 959 ++ ++ + E+E+K+LK+ +E K +P + +K ++T+ A Sbjct: 108 LLEELK-QLEKELKKLKAELEKYEKN--DPERIEKLKEETKVAKEA 150 >gnl|CDD|37716 KOG2505, KOG2505, KOG2505, Ankyrin repeat protein [General function prediction only]. Length = 591 Score = 31.2 bits (70), Expect = 2.0 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%) Query: 400 QEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSV 456 QE +Q ++ KEK +KA K+ K++ + + + E + + EGD LG+P V Sbjct: 505 QEREQA--EKKKEKKANQKAKKKLKKELRKAEEKQKYAEMS--EREGDGKLLGIPPV 557 >gnl|CDD|32449 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown]. Length = 548 Score = 31.2 bits (70), Expect = 2.1 Identities = 42/230 (18%), Positives = 80/230 (34%), Gaps = 36/230 (15%) Query: 385 TSELKQATVLARANAQEEKQRREQE--------------------AKEKADREKADKEAK 424 +E ++ T +A A A + + E E A+ +A+ E + Sbjct: 227 ENEAEKETEIAIAEANRDAKLVELEVEQQPAGKTAEQTREVKIILAETEAEVAAWKAETR 286 Query: 425 EKADREK--ADKDLQEKTPIKAEGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKE 482 +A++ + A++ +QE+ +AE + V L +++E E E Sbjct: 287 REAEQAEILAEQAIQEEK-AQAEQEVQHAKALEAREMRVGLIERQKETELEPQERSYFIN 345 Query: 483 PGTTETDDREETERKNQDILDNSLLAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQ 542 + + E K + + G A T +A A+ + + +Q Sbjct: 346 AAQRQ----AQEEAKA--AANIAEAIGAQAEAAVETARETEEAERAEQAALVAAAEAAEQ 399 Query: 543 REKPLA----SDIGVGESDYAGIKLT---KKEKELQEQEENLRVAEIIQQ 585 + +A + E+ A IK +EK E E +AE IQ Sbjct: 400 EQVEIAVRAEAAKAEAEAQAAEIKAEAEAIREKGKAEAEAKRALAEAIQV 449 >gnl|CDD|114398 pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Length = 171 Score = 30.8 bits (69), Expect = 2.2 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 14/102 (13%) Query: 400 QEEKQRREQEAKEKADREK-ADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVPT 458 QEE++RREQE +++ +RE+ + A+E+ RE+ + +E+ + E Sbjct: 41 QEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKE------------- 87 Query: 459 HSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQD 500 K +EEE +E +++ + K+ E REE ER + Sbjct: 88 EKAKRKAEEEEKQEQEEQERIQKQKEEAEARAREEAERMRLE 129 >gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]. Length = 807 Score = 30.8 bits (69), Expect = 2.5 Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 14/151 (9%) Query: 457 PTHSVKLPPKEEELEEVKDE------GKKGKEPGTTETDDREETERKNQDILDNSLLAGK 510 + EE+LE+V+++ GKKGK G E+ +N+D D +A Sbjct: 2 GKKKERFDDDEEQLEKVQEKKPSKKGGKKGKRGGGGGDSSDEDVTTRNRDNEDLESIASS 61 Query: 511 THTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKP----LASDIGVGESDYAGIKLTKK 566 +K +T AK + KG ++ D+ EKP A+D+ + D A K Sbjct: 62 NQSKQQTAGKKQAK----KGKKGKRNNDWSDEDEKPEKSLPANDLDDEDDDEAAKKPQPS 117 Query: 567 EKELQEQEENLRVAEIIQQSRMQSEDLQEKA 597 +K + +++N + + + ++++ A Sbjct: 118 KKNKKNKKKNDDFSLDLDDLDNEEDEVEVVA 148 >gnl|CDD|34946 COG5384, Mpp10, U3 small nucleolar ribonucleoprotein component [Translation, ribosomal structure and biogenesis]. Length = 569 Score = 30.5 bits (68), Expect = 2.6 Identities = 45/210 (21%), Positives = 79/210 (37%), Gaps = 17/210 (8%) Query: 402 EKQRREQEAKEKADREKADKEAKEKA-DREKADKDLQEKTPIKAEGDD--FGLGLPSVPT 458 E ++ + K+ + E+ D+E + A D+ K D E+ AEG L S Sbjct: 220 EPVKKHSDVKDPKEDEELDEEEHDSAMDKVKLDLFADEEDEPNAEGVGEASDKNLSSFEK 279 Query: 459 HSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLAGKTHTKNETP 518 +++ + EELE+ K+ K G R + NSLLA + K Sbjct: 280 QQIEMDEQIEELEKELVAPKEWKYAGEVSAKKRPK----------NSLLAEELEFKQGAK 329 Query: 519 AIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKKEKELQEQEENLR 578 +P + ++ + I ++ ++ A I + I E EL E + L Sbjct: 330 PVPVSTKEDTESLEDIILQRIREGTFDDHAYRIREEVT----IADEIPEFELLESKSILS 385 Query: 579 VAEIIQQSRMQSEDLQEKAWDSYKEWKSLS 608 +AE + MQ D + + K + Sbjct: 386 LAEEYEGDLMQIVDESALSEELDKGHNEIF 415 >gnl|CDD|39565 KOG4364, KOG4364, KOG4364, Chromatin assembly factor-I [Chromatin structure and dynamics]. Length = 811 Score = 30.9 bits (69), Expect = 2.6 Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 3/152 (1%) Query: 401 EEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVPTHS 460 ++ R+ E +EK +E+ + +EK +EK K+ ++ IK E + Sbjct: 249 LKQLRKNMEEREKERKERERQVLEEKRLKEKEQKEEKKA--IKEENNKEKEETKLEKDIK 306 Query: 461 VKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLAGKTHTKNETPAI 520 + KE+E + KDE +K K+ + + ERK + + K +K Sbjct: 307 KQQKEKEKEEKRRKDEQEKLKKQEEKQ-KRAKIMERKEEKSRKSDEERKKLESKEVEAQE 365 Query: 521 PTAKAPPAQAHKGIQDKKPQDQREKPLASDIG 552 K A+ K Q + Sbjct: 366 LRKKRHEAEIGKFFQKIDNKFSTTCEATVSDI 397 Score = 28.9 bits (64), Expect = 8.9 Identities = 9/53 (16%), Positives = 32/53 (60%) Query: 387 ELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEK 439 E ++ + + ++E++ ++ KE+ ++EK + + ++ +++ +K+ +EK Sbjct: 265 ERERQVLEEKRLKEKEQKEEKKAIKEENNKEKEETKLEKDIKKQQKEKEKEEK 317 >gnl|CDD|109486 pfam00430, ATP-synt_B, ATP synthase B/B' CF(0). Part of the CF(0) (base unit) of the ATP synthase. The base unit is thought to translocate protons through membrane (inner membrane in mitochondria, thylakoid membrane in plants, cytoplasmic membrane in bacteria). The B subunits are thought to interact with the stalk of the CF(1) subunits. This domain should not be confused with the ab CF(1) proteins (in the head of the ATP synthase) which are found in pfam00006. Length = 132 Score = 30.7 bits (70), Expect = 2.8 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 8/79 (10%) Query: 368 KAETRLAYSTIANVANFTSELKQA-------TVLARANAQEEKQRREQEAKEKADREKAD 420 +AE RL + A +L QA A+ AQ+ K+ EA++ A+R Sbjct: 41 EAEERLKQAAALL-AEAEQQLAQARAEASEIINNAKKEAQKLKEEILAEAQKDAERLLES 99 Query: 421 KEAKEKADREKADKDLQEK 439 A+ + ++E+A +L+++ Sbjct: 100 ARAEIEQEKEQALAELRQQ 118 >gnl|CDD|35385 KOG0163, KOG0163, KOG0163, Myosin class VI heavy chain [Cytoskeleton]. Length = 1259 Score = 30.4 bits (68), Expect = 3.3 Identities = 13/40 (32%), Positives = 23/40 (57%) Query: 396 RANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKD 435 + EEK+RRE+E K++A E K E+ R+ +++ Sbjct: 938 KRREAEEKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEE 977 >gnl|CDD|32843 COG3027, COG3027, Uncharacterized protein conserved in bacteria [Function unknown]. Length = 105 Score = 30.3 bits (68), Expect = 3.6 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 3/85 (3%) Query: 336 GVTYDQIKQLRDLASKVKADYHWAEIRHGNRFKAETRLAYSTIANVANFTSELKQATVLA 395 +Q + LR A + D E++ N RLA NV + +LK+ Sbjct: 16 NCPEEQEEHLRQAARLL--DDKVRELKESNGVLDTERLAVMAALNVMHELLKLKEKLRDI 73 Query: 396 RANAQEEKQRREQEAKEKADREKAD 420 A+ E++ R+ +A E A A Sbjct: 74 EASL-EQRIRKLDQALENALTTLAQ 97 >gnl|CDD|37474 KOG2263, KOG2263, KOG2263, Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]. Length = 765 Score = 30.0 bits (67), Expect = 4.0 Identities = 35/141 (24%), Positives = 49/141 (34%), Gaps = 25/141 (17%) Query: 347 DLASKVKADYHWAEIRHGNRFKAETRLAYSTIANVANFTSELKQATVLA--RANAQEEKQ 404 DL ++ K D AEI+ F A+ + V L V A ANA Sbjct: 337 DLINETKLD---AEIKSWLAFAAQK------VVEVNALAKALSGQKVEALFEANAAALAS 387 Query: 405 RREQ----EAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVPTHS 460 RR + +A A D Q+K L LP +PT + Sbjct: 388 RRSSPRVTNEAVQKRVAAVKGSDHRRATPVSARLDAQQKK----------LNLPLLPTTT 437 Query: 461 VKLPPKEEELEEVKDEGKKGK 481 + P+ +EL V+ E K K Sbjct: 438 IGSFPQTKELRRVRREFKAKK 458 >gnl|CDD|112104 pfam03274, Foamy_BEL, Foamy virus BEL 1/2 protein. Length = 222 Score = 29.8 bits (67), Expect = 4.4 Identities = 12/49 (24%), Positives = 20/49 (40%) Query: 567 EKELQEQEENLRVAEIIQQSRMQSEDLQEKAWDSYKEWKSLSPDEIKQR 615 K +E EN + Q + + + YKE + +P +IK R Sbjct: 8 LKVAEEPGENPGRPKRYTQIKTPPREPSCVTYHGYKEKEDKNPGDIKLR 56 >gnl|CDD|48213 cd03401, Band_7_prohibitin, Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.. Length = 196 Score = 29.8 bits (67), Expect = 4.6 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 397 ANAQEEKQRREQEA-KEKADREKADKEAKEKADREKAD 433 A E KQ +QEA + K EKA++E + R + + Sbjct: 155 TKAVEAKQVAQQEAERAKFVVEKAEQEKQAAVIRAEGE 192 >gnl|CDD|30678 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]. Length = 291 Score = 30.1 bits (67), Expect = 4.6 Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 382 ANFTSELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTP 441 + E++ A + + A+ +K+ EA+ +A E + +A A+ + + + Sbjct: 169 IDPPEEVQAA-MEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEAEVI 227 Query: 442 IKAEGD 447 +AE D Sbjct: 228 ARAEAD 233 >gnl|CDD|37623 KOG2412, KOG2412, KOG2412, Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]. Length = 591 Score = 30.0 bits (67), Expect = 4.7 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 387 ELKQATVLARANAQE-EKQRREQEAKEKADREKADKEAKEKADREKAD-KDLQEKTPIKA 444 E + A QE EK R E+E +E+ +E ++ KE D + + K ++K I+ Sbjct: 235 EELRQKEDEEAELQEQEKIRAEEEKQEEERKEAEEQAEKEVQDPKAHEEKLAEQKAVIEK 294 Query: 445 EGDDF 449 Sbjct: 295 VTTSS 299 Score = 29.6 bits (66), Expect = 5.4 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 5/55 (9%) Query: 396 RANAQEEKQRREQEAKEKADREKA-----DKEAKEKADREKADKDLQEKTPIKAE 445 R QEE +++E E E ++EK +E + K E+A+K++Q+ + + Sbjct: 230 RRAHQEELRQKEDEEAELQEQEKIRAEEEKQEEERKEAEEQAEKEVQDPKAHEEK 284 Score = 29.3 bits (65), Expect = 6.4 Identities = 11/39 (28%), Positives = 22/39 (56%) Query: 401 EEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEK 439 E K+R QE + + E+A+ + +EK E+ ++ + K Sbjct: 227 ERKRRAHQEELRQKEDEEAELQEQEKIRAEEEKQEEERK 265 >gnl|CDD|37283 KOG2072, KOG2072, KOG2072, Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]. Length = 988 Score = 30.0 bits (67), Expect = 4.7 Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 13/118 (11%) Query: 394 LARANAQEEKQRREQEAK----EKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDF 449 A+ A+E++Q RE E K EK +RE +++A R+K K+ E+ G Sbjct: 591 EAQEQAKEQRQAREAEEKRLIEEKKEREAKRILREKEAIRKKELKERLEQLKQTEVGAKG 650 Query: 450 GLGLPSVPTHSVKLPP-KEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSL 506 G + K ++EE++ E K E R + + K D L+ + Sbjct: 651 GKEKDLEDLEKLDADQIKARQIEELEKERK--------ELQSRLQYQEKKIDHLERAK 700 >gnl|CDD|37652 KOG2441, KOG2441, KOG2441, mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification, Chromatin structure and dynamics]. Length = 506 Score = 29.7 bits (66), Expect = 5.1 Identities = 14/59 (23%), Positives = 33/59 (55%) Query: 387 ELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAE 445 E++ L R A++EK+ +EQ+ +E A + + ++ + EK D++ + + I+ + Sbjct: 297 EVRMRAQLERKMAEKEKEEKEQKLRELAQKAREERGGPQTGAIEKEDREARTREEIRRD 355 >gnl|CDD|38785 KOG3578, KOG3578, KOG3578, Uncharacterized conserved protein [Function unknown]. Length = 1058 Score = 29.7 bits (66), Expect = 5.2 Identities = 48/304 (15%), Positives = 93/304 (30%), Gaps = 42/304 (13%) Query: 701 KNAVDAMSKAVEAGESSVRKHSFEVLSSKHQKSVIAVNNFIKEITHHTRRLVKEDPKRGK 760 + + + E F+ K + A++ + V E K+ Sbjct: 403 DEMLKEVKRLCE--HLKTIMLEFQ---QKKRDQTEAISKLPQWGKQKVIHDVSELKKKCI 457 Query: 761 SESYLS----DIRSELQKVNKTVMDIRIKLRLYGIFQDIPQEQPPLYTIISGSEKILQGD 816 + + I IK RL T ++ + IL+ Sbjct: 458 RIKETITRDLYLLIRSKLAEDHFNGIEIKQRL---------------TFVNLALAILRAI 502 Query: 817 YTFPPLSSLDVQSKFD--SSYSKLFEIFYGDWTNNAIKEERYWTIYAFERSLKNQAHLNA 874 T L ++S D S+ S+ + W K A + + + + + Sbjct: 503 ETVKRLELFLIKSVLDNWSTISEGSFLARQQWR----KHMLRILSEARKSYVSSVSKNIS 558 Query: 875 EVERLSGLAQQPSDSTADLKELQTQLSRAKKYKESNDERIVSFIRSEFER-EIKELKSVI 933 +ER + Q S + E Q ++ K+S +E I S + E L++ + Sbjct: 559 VIERATYRLQNLVSSFYHIAEAQAMFRGSRCIKQSANEMIPSRLVVLGEAYLRGRLETHL 618 Query: 934 EADAKENPNPNKNQKKLQKTREKLVAQLSSRLKELNIDNAYGLWNEYKEDFKASFEYPLG 993 + N+K Q L +L + ++L A+ ++ Y L Sbjct: 619 SSP---------NRKPFQDLMNDL--ELFNSPRQLLQKAAFTGILLSHSNYLPHTFYNLT 667 Query: 994 TYEP 997 TY Sbjct: 668 TYAK 671 >gnl|CDD|37351 KOG2140, KOG2140, KOG2140, Uncharacterized conserved protein [General function prediction only]. Length = 739 Score = 29.6 bits (66), Expect = 5.3 Identities = 24/165 (14%), Positives = 49/165 (29%), Gaps = 15/165 (9%) Query: 389 KQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDD 448 K+++V + +R + + RE + + E+ +EK D D Q T + Sbjct: 1 KESSVQPDKPSTSSDKRASRSQSPRESREVSRETENERKIKEKDDGDDQPGTL------N 54 Query: 449 FGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLA 508 + H + +E E + +R+ + Sbjct: 55 SYRERETSSGHERRKETRESRSERESPVRSRSPRRSARSPSRSPRRKRERSSSRKDEEKP 114 Query: 509 GKTHTKNETPAIPTAKA-----PPAQ---AHKGIQDKK-PQDQRE 544 + + + + PPA+ I DK + QR Sbjct: 115 KPKKKELDPLDLLRTRTGGAYIPPAKLRMMQAQITDKNSIEYQRM 159 >gnl|CDD|34550 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]. Length = 420 Score = 29.5 bits (66), Expect = 5.4 Identities = 15/48 (31%), Positives = 17/48 (35%), Gaps = 2/48 (4%) Query: 385 TSELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKA 432 S LK +A A A K R A E A EAK + K Sbjct: 233 ESRLKN--EIASAEAAAAKAREAAAAAEAAAARARAAEAKRTGETYKP 278 >gnl|CDD|33091 COG3280, TreY, Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]. Length = 889 Score = 29.6 bits (66), Expect = 5.6 Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 16/115 (13%) Query: 800 PPLYTIISGSEKILQGDYTFPPLSSLDVQSKFD-----------SSYSKLFEIFYGDWTN 848 P Y ++ EKIL D P ++D + +D + Y ++ Sbjct: 324 PDRYIVV---EKILAVDEPLPEDWAVDGTTGYDFLNELNGVLVDPAGESELTQLYLTFSG 380 Query: 849 NAIKEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTADLKELQTQLSRA 903 + +E +Y + + Q +L E+ RL+ L + + + A + L RA Sbjct: 381 RPV-DEYPALLYQAKLLVLVQ-NLAGELRRLARLLLRIASADAAANDFTVNLIRA 433 >gnl|CDD|35564 KOG0343, KOG0343, KOG0343, RNA Helicase [RNA processing and modification]. Length = 758 Score = 29.6 bits (66), Expect = 6.1 Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 8/127 (6%) Query: 385 TSELKQATVLARANAQEEKQRREQEAKEKADREKA-DKEAKEKADREKADKDLQEKTPIK 443 L++A + +E+K+R +++ KEK + ++ E+A+ E+A+ + ++ + Sbjct: 635 GINLEKAKAELKEEDKEDKKRFKEKRKEKRREKLEKERRRAEEANEEEAEAEEEDGDFVD 694 Query: 444 AEGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILD 503 G + + +P KE + +E +GK D + E N + D Sbjct: 695 WSGSEDDPDISWLPDPDKVRKKKESDSDEN-----EGKIQSALAADGIK--EVSNSSVED 747 Query: 504 NSLLAGK 510 LA K Sbjct: 748 VEPLALK 754 >gnl|CDD|37481 KOG2270, KOG2270, KOG2270, Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms, Cell cycle control, cell division, chromosome partitioning]. Length = 520 Score = 29.6 bits (66), Expect = 6.3 Identities = 13/42 (30%), Positives = 28/42 (66%) Query: 398 NAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEK 439 + +E +R+++ A+EK +R+K KEAK + + K K ++++ Sbjct: 470 DIREHAKRKKKTAREKKERKKKVKEAKREKRKTKIPKHVKKR 511 >gnl|CDD|38255 KOG3045, KOG3045, KOG3045, Predicted RNA methylase involved in rRNA processing [RNA processing and modification]. Length = 325 Score = 29.6 bits (66), Expect = 6.3 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 7/89 (7%) Query: 463 LPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLAGKTHTK-----NET 517 L E LE+V++ KK E T+ E+ ++K + L K + E Sbjct: 6 LHVPAEALEKVENWLKKPSEKPTSSKTKEEKKKKKRKKGERK--LKAKKAAELKENVEEP 63 Query: 518 PAIPTAKAPPAQAHKGIQDKKPQDQREKP 546 P AK+ P + K + + + ++EKP Sbjct: 64 PLGSEAKSSPKENSKKKRRNETKKKKEKP 92 >gnl|CDD|146000 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 Score = 29.3 bits (65), Expect = 6.3 Identities = 14/35 (40%), Positives = 26/35 (74%), Gaps = 1/35 (2%) Query: 405 RREQEAKEKADREKADKEAKEKADREKADKDLQEK 439 ++ +EA EKA RE A+++A+E+ +REK + +E+ Sbjct: 579 KKREEAVEKAKRE-AEQKAREEREREKEKEKERER 612 Score = 28.9 bits (64), Expect = 8.6 Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Query: 396 RANAQEEKQRR-EQEAKEKADREKADKEAKEKADREKADK 434 R A E+ +R EQ+A+E+ +REK ++ +E+ +A++ Sbjct: 581 REEAVEKAKREAEQKAREEREREKEKEKEREREREREAER 620 >gnl|CDD|37477 KOG2266, KOG2266, KOG2266, Chromatin-associated protein Dek and related proteins, contains SAP DNA binding domain [Chromatin structure and dynamics]. Length = 594 Score = 29.4 bits (65), Expect = 6.4 Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 7/132 (5%) Query: 398 NAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVP 457 E+K + E E A A + +EK + ++ +E E + S Sbjct: 36 GVDEDKSKDAAEKPEDASESMATETVEEKTPEDDSEAKTKESDAAPKEEKE---IKESEK 92 Query: 458 THSVK--LPPKEEELEEVKDEGK--KGKEPGTTETDDREETERKNQDILDNSLLAGKTHT 513 + + K+EE EE +DE + + +E + D +E ++ + + K+ Sbjct: 93 KDEKEESMDEKDEEKEEDEDEPEEDEKEEGEDDKEDKKEPSKDSEKRGKGATKSRPKSKA 152 Query: 514 KNETPAIPTAKA 525 E P Sbjct: 153 DEEKKPEPKTPF 164 >gnl|CDD|37784 KOG2573, KOG2573, KOG2573, Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification, Translation, ribosomal structure and biogenesis]. Length = 498 Score = 29.2 bits (65), Expect = 7.7 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%) Query: 366 RFKAETRLAYSTIANVANFTSE-LKQATVLARANAQEEKQRREQEAKEKADREKADKEAK 424 R + E RL + S+ +K+A +++ E AKEK ++++ ++ K Sbjct: 400 REQVEERLEFYETGEAPRKNSDVMKEAMEAYNGISRDSAPEDEASAKEKPEKDEEKEKKK 459 Query: 425 EKADREKADKDLQEKTPIKAEGDD 448 EK +++ + EK AE DD Sbjct: 460 EKKGKKEKRAEEGEKKNNSAERDD 483 >gnl|CDD|37037 KOG1826, KOG1826, KOG1826, Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]. Length = 2724 Score = 29.2 bits (65), Expect = 8.5 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 7/62 (11%) Query: 1007 DRLHPIYSVSKTIQKAGGDPSLMMDYEKVEPSDVMAGLPDDLAKRFKALLSWKGWHQLTP 1066 D L I + +TI DP M + D + L L K FKA+ Q++ Sbjct: 1171 DLLEQIIKLVRTILDRDDDPIAMALF-STVIVDQIDELARVLVKIFKAI------IQMSK 1223 Query: 1067 AP 1068 Sbjct: 1224 MF 1225 >gnl|CDD|112811 pfam04012, PspA_IM30, PspA/IM30 family. This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma(54) containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator. Length = 220 Score = 28.9 bits (65), Expect = 9.6 Identities = 11/53 (20%), Positives = 25/53 (47%) Query: 387 ELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEK 439 + +QA A ++ +++ E++ ++ E + A K + E A + L E Sbjct: 41 KARQALAQVIARQKQLERKLEEQKEQAKKLENKARAALTKGNEELAREALAEI 93 >gnl|CDD|35720 KOG0499, KOG0499, KOG0499, Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism, Signal transduction mechanisms]. Length = 815 Score = 28.8 bits (64), Expect = 9.7 Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 12/103 (11%) Query: 368 KAETRLAYSTIANVANFTSELKQATVLARANAQEEKQRREQEAKEKADREKADK-EAKEK 426 ++A + E +EE + R+ KE D++K ++ + KE Sbjct: 688 TLLGLTGKMSLARLLKLKEEQAAQKKEKSEGGEEEGKERQDVQKENEDKQKDNEDKGKEN 747 Query: 427 ADREKADKDLQEKTPIKAEGDDFGLGLPSVPTHSVKLPPKEEE 469 D++K ++ L P+ +V P Sbjct: 748 EDKDKGR-----------TPEEKPLDPPTASPIAVLEEPHSVR 779 >gnl|CDD|38748 KOG3540, KOG3540, KOG3540, Beta amyloid precursor protein [General function prediction only]. Length = 615 Score = 28.9 bits (64), Expect = 9.7 Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 4/60 (6%) Query: 381 VANFTSELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKE-KADREKADKDLQEK 439 VANFT+E +A + E++ R++ K + E+A+ +AK KA+++ ++ Q+ Sbjct: 241 VANFTNEHAD---FQKAKMRLEEKHRKRMDKVMKEWEEAETQAKNPKAEKQALNQHFQKT 297 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.312 0.130 0.366 Gapped Lambda K H 0.267 0.0574 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 14,634,427 Number of extensions: 788875 Number of successful extensions: 2958 Number of sequences better than 10.0: 1 Number of HSP's gapped: 2733 Number of HSP's successfully gapped: 291 Length of query: 1246 Length of database: 6,263,737 Length adjustment: 105 Effective length of query: 1141 Effective length of database: 3,994,792 Effective search space: 4558057672 Effective search space used: 4558057672 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 63 (28.4 bits)