RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781206|ref|YP_003065619.1| hypothetical protein
CLIBASIA_05565 [Candidatus Liberibacter asiaticus str. psy62]
         (1246 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 62.3 bits (151), Expect = 7e-10
 Identities = 106/708 (14%), Positives = 183/708 (25%), Gaps = 301/708 (42%)

Query: 39  LREFIIAWSSDLNPHKDRYDYIVGPIEQRLKKVSERYERVVS--RDLTLVIEAGLKDLKE 96
            R   ++       H        G +E  L  V      + S  ++         K L E
Sbjct: 6   TRPLTLS-------H--------GSLEHVLL-VPTASFFIASQLQE------QFNKILPE 43

Query: 97  VGDTLKRLAETGEVILSDKSDRLLCRFMDMVETEDEHKINKQVRDALESAGFDLESTQEN 156
             +      E            L+ +F+  V +  E     Q    L             
Sbjct: 44  PTEGFAADDEPTTPAE------LVGKFLGYVSSLVEPSKVGQFDQVLNLC---------- 87

Query: 157 IRKVESALINNNMKDAFRFLELAQKSKETADSHIIEAIDVGTKLKENTPPTTFTSISKVL 216
           + + E+  +  N                  D H      +  KL      TT     +++
Sbjct: 88  LTEFENCYLEGN------------------DIH-----ALAAKL-LQENDTTLVKTKELI 123

Query: 217 LKSNNMQDVVFTKIKEVVKKHVNAEL-----GHRKLRGLAF-----DHTYFNDKLNQFLK 266
              N +   +  K +   KK  +A       G+ +L  + F        YF +     L+
Sbjct: 124 --KNYITARIMAK-RPFDKKSNSALFRAVGEGNAQLVAI-FGGQGNTDDYFEE-----LR 174

Query: 267 EIKNHQKEYDESEKGSSKARYHAAYAHIYWDLANDWVNGRVGDKSDEWARTSTNIASWIG 326
           ++      Y                   Y  L  D +     +   E  RT+ +      
Sbjct: 175 DL------YQ-----------------TYHVLVGDLI-KFSAETLSELIRTTLDAEK--- 207

Query: 327 RITRTEGLGGVTYDQIKQLRDLASKVKADY-----------------HWA---------- 359
               T+GL     + ++ L + ++    DY                 H+           
Sbjct: 208 --VFTQGL-----NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP 260

Query: 360 -EIRHGNRFKAETRLAYSTIANVANFTSELKQATVLARANAQEEKQRREQEAKEKADREK 418
            E+R     K  T   +S             Q  V A A A+              D   
Sbjct: 261 GELRS--YLKGAT--GHS-------------QGLVTAVAIAE-------------TD--- 287

Query: 419 ADKEAKEKADREKADKDL-------QEKTP-------IKAEGDDFGLGLPSVPTHSVK-L 463
              E+   + R KA   L        E  P       I  +  +   G+PS P  S+  L
Sbjct: 288 -SWESFFVSVR-KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS-PMLSISNL 344

Query: 464 PPKEEELEEVKDEGKKGKEPGTTETDDREETER---KNQDI---LDNS----LLAGKTHT 513
              +E++++  +                 +T       + +   L N     +++G    
Sbjct: 345 T--QEQVQDYVN-----------------KTNSHLPAGKQVEISLVNGAKNLVVSG---- 381

Query: 514 KNETPAIP---------TAKAPPAQAHKGI-QDKKPQDQREKPLASD----IGVG-ESDY 558
               P             AKAP      G+ Q + P  +R K   S+    +     S  
Sbjct: 382 ----PPQSLYGLNLTLRKAKAPS-----GLDQSRIPFSER-KLKFSNRFLPVASPFHSHL 431

Query: 559 AGIKLTKKEKELQEQEENLRVAEI-IQQSRMQ--------SEDLQEKAWDSYKEWKSLSP 609
               L      + +    L    +      +Q          DL+           S+S 
Sbjct: 432 ----LVPASDLINKD---LVKNNVSFNAKDIQIPVYDTFDGSDLRV-----LSG--SISE 477

Query: 610 DEIKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAIN----HFLDNDFG 653
             +    +           PV          +        H L  DFG
Sbjct: 478 RIVDCIIRL----------PVKW--------ETTTQFKATHIL--DFG 505



 Score = 60.7 bits (147), Expect = 2e-09
 Identities = 67/497 (13%), Positives = 128/497 (25%), Gaps = 205/497 (41%)

Query: 862  FERSLKNQAHLNAEVER---LSGLAQQPSDSTADLKELQTQLSRAKKY-----KESNDER 913
                +   +   A   +      L  +P++  A   E  T      K+           +
Sbjct: 18   HVLLVPTASFFIASQLQEQFNKIL-PEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSK 76

Query: 914  IVSFIRS------EFEREI---KELKSVIEADAKENPNPNKNQKKLQKT--------REK 956
            +  F +       EFE       ++ ++     +EN       K+L K         +  
Sbjct: 77   VGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRP 136

Query: 957  LVAQLSSRL-KELNIDNA--Y------GLWNEYKEDFKASFEYPLGTYEPAILGAMKDMD 1007
               + +S L + +   NA         G  ++Y E+ +  ++    TY   +        
Sbjct: 137  FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ----TYHVLV-------G 185

Query: 1008 RLHPIYSVSKTIQKAGGDPSLMMDYEKVEPS--DVMA----------------------- 1042
             L  I   ++T+ +         D EKV     +++                        
Sbjct: 186  DL--IKFSAETLSELIRTTL---DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240

Query: 1043 -GL----------------PDDLAKRFKA------------------------------- 1054
             G+                P +L    K                                
Sbjct: 241  IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300

Query: 1055 -LLSWKGWHQLTPAPKISTPSFEVSSYVNPKRMHADTESDIYFEEFKRSLSSWEDEP--- 1110
             +L + G       P  S P         P  +  D            SL + E  P   
Sbjct: 301  TVLFFIGVRCYEAYPNTSLP---------PS-ILED------------SLENNEGVPSPM 338

Query: 1111 -RIEVERDATLPRLAKDDGSKEDEYEGGANERYVCIPSMDTSESFNSTMGKKRRIFKVVV 1169
              I    + T  ++                + YV           NS +   +++    +
Sbjct: 339  LSI---SNLTQEQV----------------QDYV--------NKTNSHLPAGKQVE---I 368

Query: 1170 RVINTADLEVGILGFPIVPVEELRG--------KPKTGEFEVLVPSDASLNPEIIIRQKT 1221
             ++N A   V + G    P + L G        K  +G  +  +P       +   R   
Sbjct: 369  SLVNGAKNLV-VSG----PPQSLYGLNLTLRKAKAPSGLDQSRIPFS-ERKLKFSNR--- 419

Query: 1222 GGYFCLTSITA--HTQF 1236
               F L  + +  H+  
Sbjct: 420  ---F-L-PVASPFHSHL 431



 Score = 58.4 bits (141), Expect = 1e-08
 Identities = 102/707 (14%), Positives = 195/707 (27%), Gaps = 284/707 (40%)

Query: 583  IQQSRMQSEDLQEKA---WDSYKEWKSLSP--DEIKQRFQKYAKVFYRSYSPVD--GSYK 635
            ++   +        A    + +   K L    +                 +P +  G + 
Sbjct: 16   LEHVLLVPTASFFIASQLQEQFN--KILPEPTEGFAAD--------DEPTTPAELVGKFL 65

Query: 636  G---TQESDKAINHFLD------NDF--GYYR---IHNF---LSQWSPLGLMYEKDEL-- 676
            G   +      +  F         +F   Y     IH     L Q +   L+  K+ +  
Sbjct: 66   GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN 125

Query: 677  --HGVEAVYQKLD-----VLFRHCIENLRANKNAVDAMSKAVEAGESSVRKHSFEVLSSK 729
                     +  D      LFR         +     +  A+  G+ +   + FE L   
Sbjct: 126  YITARIMAKRPFDKKSNSALFRA------VGEGNAQLV--AIFGGQGNTDDY-FEELRDL 176

Query: 730  HQ--KSVIAVNNFIKEITHHTRRLVKEDPKRGKSESYLS---DIRSELQKVNKT-----V 779
            +Q    ++   + IK        L++        E   +   +I   L+  + T     +
Sbjct: 177  YQTYHVLVG--DLIKFSAETLSELIRTTLDA---EKVFTQGLNILEWLENPSNTPDKDYL 231

Query: 780  MDIRIKLRLYGIFQDIPQEQPPL--YTIISGSEKILQGDYTFPPLSSLDVQSKF------ 831
            + I I   L G+ Q        L  Y + +   K+L G       +  +++S        
Sbjct: 232  LSIPISCPLIGVIQ--------LAHYVVTA---KLL-G------FTPGELRSYLKGATGH 273

Query: 832  -------------DSSYSKLFEIFYGDWTNNAIK--EERYWTIY----AFERSLKNQAHL 872
                         DS     +E F+     +  K     ++       A+  +    + L
Sbjct: 274  SQGLVTAVAIAETDS-----WESFF----VSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324

Query: 873  NAEVERLSGLAQQPSD--STADL--KELQTQLSRAKKY-KESNDERI-VSFI--RSEFER 924
               +E   G    PS   S ++L  +++Q  +++   +      +++ +S +        
Sbjct: 325  EDSLENNEG---VPSPMLSISNLTQEQVQDYVNKTNSHLPA--GKQVEISLVNGAKNL-- 377

Query: 925  EIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQLSSRLKELNIDNAYGLWNEYKEDF 984
                   V+    +                  L   L+  L++       GL ++ +  F
Sbjct: 378  -------VVSGPPQS-----------------LYG-LNLTLRK--AKAPSGL-DQSRIPF 409

Query: 985  ---KASFEYPLGTYEPAILGAMKDMDRLHPIYSV---SKTIQKAGGDPSLMMDYEKVEPS 1038
               K  F                   R  P+ +    S  +  A          + +   
Sbjct: 410  SERKLKFSN-----------------RFLPV-ASPFHSHLLVPA---------SDLIN-- 440

Query: 1039 DVMAGLPDDLAKRFKALLSWKGWHQLTPAPKISTPSFEVSSYVNPKRMHADTESDIYFEE 1098
                    DL K     +S+     +    +I  P +                SD+    
Sbjct: 441  -------KDLVKNN---VSFNA-KDI----QI--PVY-----------DTFDGSDL---- 468

Query: 1099 FKRSLSS----------------WEDEPRIEVERDAT--LPRLAKDDGSKEDEYEGGANE 1140
              R LS                 WE       +  AT  L     D G       GGA+ 
Sbjct: 469  --RVLSGSISERIVDCIIRLPVKWET----TTQFKATHIL-----DFGP------GGAS- 510

Query: 1141 RYVCIPSMDTSESFNSTMGKKRRIFKVVVRVINTADLEVGI---LGF 1184
                +  + T  + + T G         VRVI    L++      GF
Sbjct: 511  ---GLGVL-THRNKDGT-G---------VRVIVAGTLDINPDDDYGF 543



 Score = 45.7 bits (108), Expect = 6e-05
 Identities = 37/227 (16%), Positives = 61/227 (26%), Gaps = 66/227 (29%)

Query: 707 MSKAVEAGESSVR---------KHSFEVLSSKHQKSVIAVNNFIKEITHHTRRLVKEDPK 757
           M         S R         +H   V ++    +      F K +   T     +D  
Sbjct: 1   MDAY------STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEP 54

Query: 758 RGKSE---SYLSDIRSELQKVNKTVMDIRIKLRLYGIFQ-------DI--------PQEQ 799
              +E    +L  + S ++       D  + L     F+       DI         +  
Sbjct: 55  TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNL-CLTEFENCYLEGNDIHALAAKLLQEND 113

Query: 800 PPL----------YTIISGSEKILQGDYTFPPLSSLDVQSKFDSSYS---KLFEIFYGDW 846
             L           T       + +  +     S+L     F +      +L  IF G  
Sbjct: 114 TTLVKTKELIKNYITARI----MAKRPFDKKSNSAL-----FRAVGEGNAQLVAIFGGQG 164

Query: 847 TNNAIKEE-R--YWTIYA-FERSLKNQAHLNAEVERLSGLAQQPSDS 889
             +   EE R  Y   Y      L     +    E LS L +   D+
Sbjct: 165 NTDDYFEELRDLY-QTYHVLVGDL-----IKFSAETLSELIRTTLDA 205



 Score = 41.5 bits (97), Expect = 0.001
 Identities = 35/166 (21%), Positives = 49/166 (29%), Gaps = 63/166 (37%)

Query: 429 RE-KADKDL-QEKTPI---KAE-GDDFGLGLP-SVPTHSVKLPPKEEELEEVKDEGKKGK 481
           R+ KA   L Q + P    K +  + F   LP + P HS  L P  + + +  D  K   
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSNRF---LPVASPFHSHLLVPASDLINK--DLVKNNV 448

Query: 482 EPGT---------TET--DDREETERKNQDILDNSLLAGKTHTKNETPAI-------PTA 523
                        T    D R  +      I +  +             I        T 
Sbjct: 449 SFNAKDIQIPVYDTFDGSDLRVLSG----SISE-RI----------VDCIIRLPVKWETT 493

Query: 524 KAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKKEKE 569
               A  H  I D  P        AS +GV         LT + K+
Sbjct: 494 TQFKA-TH--ILDFGPGG------ASGLGV---------LTHRNKD 521



 Score = 41.1 bits (96), Expect = 0.002
 Identities = 115/675 (17%), Positives = 195/675 (28%), Gaps = 285/675 (42%)

Query: 429  REKADKDLQEKTPIKAEGDDFGLGLPSVPTHSVKLPPKEEEL---------EEVKDEGKK 479
            +E+ +K L E T   A  D+     P+ P           EL           V+     
Sbjct: 34   QEQFNKILPEPTEGFAADDE-----PTTP----------AELVGKFLGYVSSLVEPS--- 75

Query: 480  GKEPGTTE---------------------------TDDREETERKNQDILDN----SLLA 508
              + G  +                             + + T  K ++++ N     ++A
Sbjct: 76   --KVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA 133

Query: 509  GKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDI--GVGE-SDYAGIKLTK 565
             +   K    A+        +A          +   + +A  I  G G   DY       
Sbjct: 134  KRPFDKKSNSAL-------FRAV--------GEGNAQLVA--IFGGQGNTDDYF------ 170

Query: 566  KEKELQEQEENLR--VAEIIQQSRMQSEDLQEKAWDSYKEWKSLSPDEIKQRFQKYAKVF 623
              +EL++  +     V ++I+ S   +E L E           L         +K     
Sbjct: 171  --EELRDLYQTYHVLVGDLIKFS---AETLSE-----------LIRTT--LDAEKV---- 208

Query: 624  YRSYSPVDGSYKGTQESDKAINHFLDN-----DFGYYRIHNFLSQWSPLGLMYEKDELHG 678
               ++      +G    +  I  +L+N     D  Y      LS   P+        L G
Sbjct: 209  ---FT------QGL---N--ILEWLENPSNTPDKDY-----LLS--IPISC-----PLIG 242

Query: 679  VEAVYQKLDVLFRHCI----------ENLRANKNAVDAMSKAVEAGESSVRKHSFEVLSS 728
               V Q    L  + +          E LR        +  A   G      HS      
Sbjct: 243  ---VIQ----LAHYVVTAKLLGFTPGE-LR------SYLKGA--TG------HS------ 274

Query: 729  KHQKSVIAVNNFIKEITHHTRRLVKEDPKRGKSESYLSDIRSELQKVNKTVMDI--RIKL 786
              Q  V AV   I E                      +D         +  + +   I +
Sbjct: 275  --QGLVTAV--AIAE----------------------TDSWESFFVSVRKAITVLFFIGV 308

Query: 787  RLYGIFQDIPQEQ-PPLYTIISGSEKILQGDYTFPPLSSLDVQSKFDSSYSKLFEIFYGD 845
            R Y   +  P    PP  +I+  S +  +G     P   L +    + +  ++ +    +
Sbjct: 309  RCY---EAYPNTSLPP--SILEDSLENNEG----VPSPMLSIS---NLTQEQVQDYV--N 354

Query: 846  WTNNAIKEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTADLKELQTQLSRAKK 905
             TN+ +   +   I     SL N A  N  V   SG    P  S   L  L   L +AK 
Sbjct: 355  KTNSHLPAGKQVEI-----SLVNGAK-NLVV---SG----PPQS---LYGLNLTLRKAKA 398

Query: 906  YKESN------DERIVSF------IRSEF--------EREIKELKSVIEADAKENPN--- 942
                +       ER + F      + S F           I +   +++ +   N     
Sbjct: 399  PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINK--DLVKNNVSFNAKDIQ 456

Query: 943  -P---NKNQKKLQKTREKLVAQLSSRLKELNIDNAYGLWNEYKEDFKAS----FEYPLGT 994
             P     +   L+     +  ++   +  L +      W E    FKA+    F  P G 
Sbjct: 457  IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK-----W-ETTTQFKATHILDFG-PGGA 509

Query: 995  YEPAILGAM----KD 1005
               + LG +    KD
Sbjct: 510  ---SGLGVLTHRNKD 521



 Score = 40.3 bits (94), Expect = 0.002
 Identities = 76/452 (16%), Positives = 135/452 (29%), Gaps = 176/452 (38%)

Query: 1   MNELATSIDYQT-NNLDQDKIPSEDVAKTLTSI----QDNIKHL-REF-IIAWSSDLNPH 53
             EL     YQT + L  D I     A+TL+ +     D  K   +   I+ W  + +  
Sbjct: 170 FEELRDL--YQTYHVLVGDLIKF--SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225

Query: 54  KDRYDYIVG-PIEQRLKKVSE--RYERVVSRDLTLVIEAGLKDLKEVGDTLKRL-AETGE 109
            D+ DY++  PI   L  V +   Y  V ++ L      G       G+    L   TG 
Sbjct: 226 PDK-DYLLSIPISCPLIGVIQLAHY-VVTAKLL------GF----TPGELRSYLKGATGH 273

Query: 110 ---VILSDKSDRLLCRFMDMVETEDEHKINKQVRDALE---SAGFDLESTQ--------E 155
              ++ +          +   ++ +       VR A+      G  +   +         
Sbjct: 274 SQGLVTA--------VAIAETDSWES--FFVSVRKAITVLFFIG--VRCYEAYPNTSLPP 321

Query: 156 NIRKVESALINNN-----MKDAFRFLELAQKSKETADSHIIEAIDVGTKLKENTPPTTFT 210
           +I  +E +L NN      M      L ++  ++E    ++        K   + P     
Sbjct: 322 SI--LEDSLENNEGVPSPM------LSISNLTQEQVQDYV-------NKTNSHLPAGKQV 366

Query: 211 SISKVLLKSNNMQDVVFTKIKEVVKKHVNAELGH-RKLRGLAFDHTYFNDKLNQFLKEIK 269
            IS V    N  +++V +              G  + L GL           N  L++ K
Sbjct: 367 EISLV----NGAKNLVVS--------------GPPQSLYGL-----------NLTLRKAK 397

Query: 270 NHQKEYDESEKGSSK-------------ARYHAAYAHIYWDL--ANDWVNGRVGDKSDEW 314
                 D+S    S+             + +H+        L  A+D +N  +   +  +
Sbjct: 398 APSGL-DQSRIPFSERKLKFSNRFLPVASPFHSHL------LVPASDLINKDLVKNNVSF 450

Query: 315 A-----------RTSTNI----ASWIGRITR---TE------------------------ 332
                          +++     S   RI                               
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGAS 510

Query: 333 GLGGVTYDQIKQ---LR-----DLASKVKADY 356
           GLG +T+ + K    +R      L      DY
Sbjct: 511 GLGVLTH-RNKDGTGVRVIVAGTLDINPDDDY 541



 Score = 39.9 bits (93), Expect = 0.004
 Identities = 63/285 (22%), Positives = 113/285 (39%), Gaps = 49/285 (17%)

Query: 144  ESAGFDLESTQENIRKVESALINNNMKDAFRF--LELAQKSKETADSHIIEAIDVGTKLK 201
            +  G DL  T +  + V +   +N+ KD + F  L++   +      H     + G +++
Sbjct: 1629 QGMGMDLYKTSKAAQDVWNR-ADNHFKDTYGFSILDIVINNPVNLTIHF--GGEKGKRIR 1685

Query: 202  ENTPPTTFTSISKVLLKSNNMQDVVFTKIKEVVKKHVNAELGHRKLRGLAFDHTYFNDKL 261
            EN     F +I    LK+      +F +I E    H +     R  +GL    T F    
Sbjct: 1686 ENYSAMIFETIVDGKLKTEK----IFKEINE----H-STSYTFRSEKGL-LSATQFTQPA 1735

Query: 262  NQFL-----KEIKNHQK-EYDESEKGSSKARYHAAYAHIYWDLAND-------WVNG--- 305
               +     +++K+      D +  G S   Y AA A +  D+ +        +  G   
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAGHSLGEY-AALASLA-DVMSIESLVEVVFYRGMTM 1793

Query: 306  RVGDKSDEWARTSTNIASWIGRITRTEGLGGVTYDQIKQLRDLASKVKADYHW-AEIRHG 364
            +V    DE  R++       G I    G    ++ Q + L+ +  +V     W  EI + 
Sbjct: 1794 QVAVPRDELGRSN------YGMIAINPGRVAASFSQ-EALQYVVERVGKRTGWLVEIVNY 1846

Query: 365  N----RFKAETRL-AYSTIANVANFTSELKQATV--LARANAQEE 402
            N    ++ A   L A  T+ NV NF  +L++  +  L ++ + EE
Sbjct: 1847 NVENQQYVAAGDLRALDTVTNVLNFI-KLQKIDIIELQKSLSLEE 1890



 Score = 30.7 bits (69), Expect = 2.1
 Identities = 59/289 (20%), Positives = 95/289 (32%), Gaps = 118/289 (40%)

Query: 24   DVAKTLTSIQDNIKHLREFIIAWSSDLNPHKDRYDY------IVGPIE-------QRLKK 70
            D+ KT  + QD           W+   N  KD Y +      I  P+        ++ K+
Sbjct: 1634 DLYKTSKAAQD----------VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR 1683

Query: 71   VSERY-----ERVVS---------------------RD--------------LTLVIEAG 90
            + E Y     E +V                      R               LTL+ +A 
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA 1743

Query: 91   LKDLKEVG----DTLKRLAETGE-VILSDKSDRLLCRFMDMVETEDEHKINKQV---RDA 142
             +DLK  G    D        GE   L+  +D +      +VE      +  QV   RD 
Sbjct: 1744 FEDLKSKGLIPADATFAGHSLGEYAALASLADVM--SIESLVEVVFYRGMTMQVAVPRDE 1801

Query: 143  LE--------------SAGFDLESTQ---ENIRK-----VESALINNNMKDAFRFLELAQ 180
            L               +A F  E+ Q   E + K     VE  ++N N+++        Q
Sbjct: 1802 LGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVE--IVNYNVEN--------Q 1851

Query: 181  KSKETADSHIIEAIDVGTKLKENTPPTTFTSISKV----LLKSNNMQDV 225
            +     D   + A+D  T +        F  + K+    L KS ++++V
Sbjct: 1852 QYVAAGD---LRALDTVTNV------LNFIKLQKIDIIELQKSLSLEEV 1891



 Score = 29.5 bits (66), Expect = 4.2
 Identities = 22/149 (14%), Positives = 38/149 (25%), Gaps = 52/149 (34%)

Query: 1074 SFEVSSYVNPKRMH--ADTESDIYFEEFKRSLSS------WEDEPRIEVERDATLPRLAK 1125
            S E    V P      A    +    +F + L         +DEP    E    L  + K
Sbjct: 15   SLEHVLLV-PTASFFIASQLQE----QFNKILPEPTEGFAADDEPTTPAE----L--VGK 63

Query: 1126 ---------DDGSK--------------EDEYEGGANERYVCIPSMDTSESFNSTMGKKR 1162
                     +                  E+ Y  G N+ +     +       +T+ K +
Sbjct: 64   FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG-NDIHALAAKLLQEND--TTLVKTK 120

Query: 1163 RIFKVVVRVINTADLEVGILGFPIVPVEE 1191
             + K  +     A     +   P      
Sbjct: 121  ELIKNYIT----A---RIMAKRPFDKKSN 142


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 39.9 bits (92), Expect = 0.004
 Identities = 17/80 (21%), Positives = 42/80 (52%), Gaps = 13/80 (16%)

Query: 553 VGESDYAGIKLTKKEKELQE--QEENLRVAEIIQQSRMQSEDLQEKAWDSYKEW-----K 605
           + ++D    +LT++ + +++  +E+  R+ E+   S++  ++ +EKA    +EW     +
Sbjct: 74  IAQAD----RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE 129

Query: 606 SLSPDEIKQRFQKYAKVFYR 625
            +  ++I  R     K FY+
Sbjct: 130 QVEKNKINNRIAD--KAFYQ 147



 Score = 36.1 bits (82), Expect = 0.046
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 6/57 (10%)

Query: 394 LARAN--AQE-EKQR--REQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAE 445
           +A+A+   QE E  R  RE++ K   + + A K   E+  REKA KDL+E    ++E
Sbjct: 74  IAQADRLTQEPESIRKWREEQRKRLQELDAASK-VMEQEWREKAKKDLEEWNQRQSE 129



 Score = 31.1 bits (69), Expect = 1.5
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 13/53 (24%)

Query: 400 QEEKQRR-----------EQEAKE--KADREKADKEAKEKADREKADKDLQEK 439
           +EE+++R           EQE +E  K D E+ ++   E+ ++ K +  + +K
Sbjct: 91  REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 143



 Score = 29.9 bits (66), Expect = 4.0
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 11/70 (15%)

Query: 115 KSDRLLCRFMDMVETEDEHKINKQVRDAL---------ESAGFDLES-TQENIRKVESAL 164
           ++DRL      + +  +E +   Q  DA          E A  DLE   Q    +VE   
Sbjct: 76  QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135

Query: 165 INNNMKD-AF 173
           INN + D AF
Sbjct: 136 INNRIADKAF 145



 Score = 29.1 bits (64), Expect = 5.8
 Identities = 27/129 (20%), Positives = 46/129 (35%), Gaps = 53/129 (41%)

Query: 310 KSDEWARTSTNIASWIGRITRTEGLGGVTYDQIKQLRDL--ASKVKADYHWAEIRHGNRF 367
           ++D   +   +I  W     R E        Q K+L++L  ASKV  +  W E       
Sbjct: 76  QADRLTQEPESIRKW-----REE--------QRKRLQELDAASKV-MEQEWRE------- 114

Query: 368 KAETRLAYSTIANVANFTSELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKA 427
           KA+  L                          +E  QR+     E+ ++ K +    +KA
Sbjct: 115 KAKKDL--------------------------EEWNQRQS----EQVEKNKINNRIADKA 144

Query: 428 DREKADKDL 436
             ++ D D+
Sbjct: 145 FYQQPDADI 153


>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomography,
           contractIle protein/transport protein complex; 24.00A
           {Gallus gallus}
          Length = 1080

 Score = 36.0 bits (82), Expect = 0.049
 Identities = 20/134 (14%), Positives = 44/134 (32%), Gaps = 6/134 (4%)

Query: 839 FEIFYGDWTNNAIKEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSD----STADLK 894
             I         +   +Y  +    +S+  Q H+   + R+       +           
Sbjct: 841 ATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRM 900

Query: 895 ELQTQLSRAKKYKESNDERIVSFIRSEFEREIKELKSVIEADAKENPNPNKNQKKLQKTR 954
             + +L + K    S +      +    E +I +L+  I+   KE  +  +    L+ T 
Sbjct: 901 MAKRELKKLKIEARSVERYKK--LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITY 958

Query: 955 EKLVAQLSSRLKEL 968
                +L S ++ L
Sbjct: 959 STETEKLRSDVERL 972



 Score = 31.8 bits (71), Expect = 0.99
 Identities = 32/231 (13%), Positives = 73/231 (31%), Gaps = 55/231 (23%)

Query: 387  ELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEG 446
            ELK+  + AR+  + +K     E K    + K D++ KE     +   +L+         
Sbjct: 905  ELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEIT------- 957

Query: 447  DDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSL 506
                                  E E+++            + +    +E + ++  +  L
Sbjct: 958  -------------------YSTETEKLRS-----------DVERLRMSEEEAKNATNRVL 987

Query: 507  LAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKK 566
               +   K              + H+   +KK  ++       +     S     +L ++
Sbjct: 988  SLQEEIAKLR-----------KELHQTQTEKKTIEEWADKYKHETEQLVS-----ELKEQ 1031

Query: 567  EKELQEQEENLRVAEIIQQSRMQSEDLQEKAWDSYKEWKSLSPDEIKQRFQ 617
               L+ ++E L     I     +  +  EK      +   L  ++ + R+Q
Sbjct: 1032 NTLLKTEKEELN--RRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl
            reductase, beta-ketoacyl synthase, dehydratase; 4.00A
            {Saccharomyces cerevisiae}
          Length = 1688

 Score = 34.4 bits (78), Expect = 0.14
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 24/123 (19%)

Query: 918  IRSEFEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQLSSRLKELNIDNAYGLW 977
            I+   E E++ LK     +A+E P+ ++N+  L++TRE +  +  S+L+      A   W
Sbjct: 1260 IKDWVENELEALK----LEAEEIPSEDQNEFLLERTRE-IHNEAESQLRA-----AQQQW 1309

Query: 978  NE--YKEDFK-ASFEYPLGTYEPAI--LGA---------MKDMDRLHPIYSVSKTIQKAG 1023
                YK D + A     L TY   I  LG            D +    I  + K + ++ 
Sbjct: 1310 GNDFYKRDPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEMMKHLGRSE 1369

Query: 1024 GDP 1026
            G+P
Sbjct: 1370 GNP 1372



 Score = 31.3 bits (70), Expect = 1.2
 Identities = 77/351 (21%), Positives = 130/351 (37%), Gaps = 83/351 (23%)

Query: 298 LANDWVNGRVGDKSDEWARTSTNIASWIGRITRTEGLGGVTYDQIKQLRDLASKVKADYH 357
           L N W        S+ WA   T   + IG    T G G ++ + I     +A  ++    
Sbjct: 650 LFNRW-------HSESWANQLTVCGAIIGW---TRGTGLMSANNI-----IAEGIE---- 690

Query: 358 WAEIRHGNRFKAETRLAYSTIANVA--------------------NFTSELKQATVLARA 397
               + G R  ++  +A++ +  +                      F  ELK+ T   R 
Sbjct: 691 ----KMGVRTFSQKEMAFNLLGLLTPEVVELCQKSPVMADLNGGLQFVPELKEFTAKLRK 746

Query: 398 NAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSV- 456
              E  + R+  + E A   K        AD   A  ++Q +  I+       L  P + 
Sbjct: 747 ELVETSEVRKAVSIETALEHKVVN--GNSADAAYAQVEIQPRANIQ-------LDFPELK 797

Query: 457 PTHSVK-LPPKEEE----LEEV-KDEGKKGKEP-GTTETDDREETERKNQDILDNSL--- 506
           P   VK + P E E    LE V    G     P G+  T  R E E   +  L+  +   
Sbjct: 798 PYKQVKQIAPAELEGLLDLERVIVVTGFAEVGPWGSART--RWEMEAFGEFSLEGCVEMA 855

Query: 507 -LAG--KTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKL 563
            + G    H  N        K  P       + K+P D ++     +  + E  ++GI+L
Sbjct: 856 WIMGFISYHNGN-------LKGRPYTGWVDSKTKEPVDDKDVKAKYETSILE--HSGIRL 906

Query: 564 TKKEKELQEQEENLRVAEIIQQSRMQSEDLQ--EKAWDSYKEWKSLSPDEI 612
              E EL     N    E+IQ+  ++ EDL+  E + ++ +++K    D++
Sbjct: 907 I--EPELFNG-YNPEKKEMIQEVIVE-EDLEPFEASKETAEQFKHQHGDKV 953



 Score = 30.6 bits (68), Expect = 2.5
 Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 558  YAGIKLTKKEKELQEQEENLRVAEIIQQSRMQSEDLQEKAWDSYKEWKSLSPDEIKQRFQ 617
            Y   +L  +E ++++  EN   A  ++   + SED  E   +  +E  + +  +++   Q
Sbjct: 1248 YRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQLRAAQQ 1307

Query: 618  KYAKVFYR---SYSPVDGS 633
            ++   FY+     +P+ G+
Sbjct: 1308 QWGNDFYKRDPRIAPLRGA 1326


>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A
           {Escherichia coli}
          Length = 505

 Score = 34.6 bits (79), Expect = 0.15
 Identities = 26/282 (9%), Positives = 73/282 (25%), Gaps = 32/282 (11%)

Query: 380 NVANFTSELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEK 439
            V  +    K    +      +  +   +      D  +  ++AK++A+          +
Sbjct: 154 GVRPYVGSEKAKAGIMEKINHKTPEEIYEALGFNKDESQRQEKAKQQAEDAWDRLPPNVR 213

Query: 440 TPIKAEGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQ 499
                                  L   ++    +       +    +E       ++ + 
Sbjct: 214 KFDVDVEQ------------FHYLVVLDDYGNVLSVTRTGVRPYVGSEKAKAGIMDKVDH 261

Query: 500 DILDNSLLAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYA 559
              +    A   + +         KA     +    ++          A+++     +  
Sbjct: 262 KTPEEIYEALGFNNEEPQRQNQAKKAAYDVFYSFSMNRDRIQSDVLNKAAEVISDIGNKV 321

Query: 560 GIKLTKKEKELQEQEENLRVAEIIQQSRMQSEDLQEKAWDSYKE---------------- 603
           G  L    K L  +  +    +  Q   ++S D    + +                    
Sbjct: 322 GDYLGDAYKSLAREIADD--VKNFQGKTIRSYDDAMASLNKVLSNPGFKFNRADSDALAN 379

Query: 604 -WKSLSPDEIKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAI 644
            W+S+   ++  +    +K F +    V    K  ++S +  
Sbjct: 380 VWRSIDAQDMANKLGNISKAF-KFADVVMKVEKVREKSIEGY 420


>2j1d_G DAAM1, disheveled-associated activator of morphogenesis 1;
           alternative splicing, coiled coil, actin assembly,
           formin, FH2 domain, protein binding; 2.55A {Homo
           sapiens} PDB: 2z6e_A
          Length = 483

 Score = 33.5 bits (76), Expect = 0.28
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 381 VANFTSELKQA-----TVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKD 435
              F   + +A      +  +   +E + R E + KE+ +RE+  ++AKE ++      D
Sbjct: 381 FDQFLQAVSEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDD 440

Query: 436 LQEK 439
           L   
Sbjct: 441 LVSA 444


>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
           dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
           2.27A {Mus musculus}
          Length = 536

 Score = 33.0 bits (75), Expect = 0.41
 Identities = 9/56 (16%), Positives = 20/56 (35%)

Query: 387 ELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPI 442
            L+Q   +     +E+    + EA    D +   ++      +    +DL +  P 
Sbjct: 6   RLRQEPEVFHRAIREKGVALDLEALLAVDEQLHKQQEVIADKQMSVKEDLDKVEPA 61


>3o4x_E Protein diaphanous homolog 1; autoinhibition, actin nucleator,
           actin binding, protein BIND; 3.20A {Mus musculus} PDB:
           2bap_D
          Length = 467

 Score = 32.8 bits (74), Expect = 0.50
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 7/69 (10%)

Query: 381 VANFTSELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKT 440
           + NF +   QA        +E ++RRE E K +  +   +K  KE+ ++++  + L +  
Sbjct: 388 LHNFRNMFLQAV-------KENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMN 440

Query: 441 PIKAEGDDF 449
               E    
Sbjct: 441 AEGDETGVM 449


>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP
           domain, DHEX domain, GGL domain, beta propeller,
           signaling protein; 1.95A {Mus musculus}
          Length = 424

 Score = 32.5 bits (74), Expect = 0.58
 Identities = 30/166 (18%), Positives = 62/166 (37%), Gaps = 17/166 (10%)

Query: 810 EKILQGDYTFPPLSSLDVQSKFDSSYSKLFEIFYGDWTNNAIK-EERYWTIYAFERSLKN 868
             I++  Y +P     ++  K DSS  +    ++  W       E+  + IY  +R++K 
Sbjct: 77  NFIVKYGYIYPLQDPKNLILKPDSSLYRFQTPYF--WPTQQWPAEDTDYAIYLAKRNIKK 134

Query: 869 QAHLNA-EVERLSGLAQQPSDSTADLKELQT--QLSRAKKYKESNDERIVSFIRSE---- 921
           +  L   E E    L ++ +    D   +Q   Q    K+  ++  +R    +  +    
Sbjct: 135 KGILEEYEKENYDFLNKKINY-KWDFVIMQAKEQYRTGKERNKA--DRYA--LDCQEKAY 189

Query: 922 --FEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQLSSRL 965
               R    + +V++       NPN+ +K+      K +      L
Sbjct: 190 WLVHRSPPGMNNVLDYGLDRVTNPNEVKKQTVTAVRKEIMYYQQAL 235


>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
           {Mus musculus} SCOP: a.207.1.1
          Length = 340

 Score = 32.3 bits (73), Expect = 0.66
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 381 VANFTSELKQATV-LARANAQEEKQRREQEAKEKADREKADKE 422
           + NF +   QA     +    EEK RR + AKEKA++E+ +K+
Sbjct: 298 LHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340


>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli,
           hydrolase; 1.90A {Escherichia coli}
          Length = 303

 Score = 32.3 bits (73), Expect = 0.69
 Identities = 21/185 (11%), Positives = 53/185 (28%), Gaps = 8/185 (4%)

Query: 791 IFQDIPQEQPPLYTIISGSEKILQGDYTFPPLSSLDVQSKFDSSYSKLFEI-FYGDWTNN 849
           + ++I Q+      + +   K +            +    F   +  + +     D+ N 
Sbjct: 106 VSREILQDSTVTRNLRNALTKRVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAEDFANQ 165

Query: 850 AIKEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTADLKELQTQLSRAKKYKES 909
               +          S      L   V R+    ++    TAD           +  ++ 
Sbjct: 166 EAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKK 225

Query: 910 N------DERIVSFIRSEFER-EIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQLS 962
                   +RI  ++ +     + K  +SV + D       + +   L       ++  +
Sbjct: 226 GIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADGDLGTLVPRGSMAISDPN 285

Query: 963 SRLKE 967
           S   +
Sbjct: 286 SSSVD 290


>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus
           SP} PDB: 2zdi_A
          Length = 117

 Score = 31.7 bits (72), Expect = 1.1
 Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 4/100 (4%)

Query: 869 QAHLNAEVERLSGLAQQPSDSTADLKELQTQLSRAKKYKESNDERIVSFIRSEFEREIKE 928
           Q  L   V++   +  + +++   L E+++    A  YK          +++  ++ + E
Sbjct: 19  QQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTL----IVKTTKDKAVAE 74

Query: 929 LKSVIEADAKENPNPNKNQKKLQKTREKLVAQLSSRLKEL 968
           LK  IE          + +KKL +  ++L AQ+ S L+  
Sbjct: 75  LKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRPP 114


>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha chain; zinc
           ribbon, crotonase superfamily, spiral domain, ligase;
           3.20A {Escherichia coli} SCOP: c.14.1.4
          Length = 339

 Score = 31.2 bits (70), Expect = 1.7
 Identities = 8/49 (16%), Positives = 22/49 (44%)

Query: 921 EFEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQLSSRLKELN 969
           +FE+ I EL++ I++    +    K    + +   +L  +     +++ 
Sbjct: 27  DFEQPIAELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKIF 75



 Score = 30.0 bits (67), Expect = 3.2
 Identities = 10/45 (22%), Positives = 22/45 (48%)

Query: 921 EFEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQLSSRL 965
           E E +I  L +    D K + N ++   +L++   +L  ++ + L
Sbjct: 34  ELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKIFADL 78


>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
          Length = 526

 Score = 31.0 bits (69), Expect = 1.9
 Identities = 26/248 (10%), Positives = 71/248 (28%), Gaps = 15/248 (6%)

Query: 376 STIANVANFTSELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEK--ADREKAD 433
           + + NV     E+           Q + +  E E + +  R K + + KEK   + E+  
Sbjct: 72  AVLLNVLGSGEEIPDPLSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVY 131

Query: 434 KDLQEKTPIKAEGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREE 493
             +  +   + E +            +  +    + L E   + ++       E  +R  
Sbjct: 132 NFMNGEANAEIEDEK------QFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTH 185

Query: 494 TERKNQDILDNSLLAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGV 553
            E              +        AI   +    +           D  E        +
Sbjct: 186 AETVMVKEY-------RDKIDALKNAIEVERDGMQEEAIQEIAGMTADVLEAASEEVPLI 238

Query: 554 GESDYAGIKLTKKEKELQEQEENLRVAEIIQQSRMQSEDLQEKAWDSYKEWKSLSPDEIK 613
           G      +   +  +   + ++ +     I  + +++  ++     +  E+++    +  
Sbjct: 239 GAGMATAVATGRAIEGAYKLKKVINALSGIDLTHLRTPKIEPSVVSTILEYRAKEIPDNA 298

Query: 614 QRFQKYAK 621
                 +K
Sbjct: 299 LAVSVLSK 306


>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
           domain, actin binding protein, contractIle protein;
           20.00A {Gallus gallus} SCOP: i.15.1.1
          Length = 863

 Score = 30.6 bits (68), Expect = 2.0
 Identities = 22/124 (17%), Positives = 49/124 (39%), Gaps = 16/124 (12%)

Query: 882 LAQQPSDSTADLKELQTQLSRAKKYKESNDERIVSFIRSEFEREIKELKSVI-------- 933
              Q +     ++    ++ R         E  ++ +R ++E+ I   K  I        
Sbjct: 611 FGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNHLR-QYEKSIVNYKPKIDQLEGDHQ 669

Query: 934 ---EADAKENPNPNKNQKKLQKTREKLVAQLSSRLKELN----IDNAYGLWNEYKEDFKA 986
              EA   +N + N   + ++   E+L+  ++  + E+       +A G+  E   +F+A
Sbjct: 670 QIQEALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEVENQILTRDAKGISQEQMNEFRA 729

Query: 987 SFEY 990
           SF +
Sbjct: 730 SFNH 733


>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha;
           zinc ribbon, crotonase superfamily, spiral domain; 1.98A
           {Staphylococcus aureus}
          Length = 327

 Score = 30.5 bits (68), Expect = 2.2
 Identities = 9/49 (18%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 921 EFEREIKELKSVIE----ADAKENPNPNKNQKKLQKTREKLVAQLSSRL 965
           +FE+ + E+++ IE    +  K + +  +    L+ + E+   ++ + L
Sbjct: 16  DFEKPLFEIRNKIESLKESQDKNDVDLQEEIDMLEASLERETKKIYTNL 64


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.7 bits (68), Expect = 2.3
 Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 19/47 (40%)

Query: 945 KNQ--KKLQKTREKLVAQLSSRLKELNIDNAYGLWNEYKEDFKASFE 989
           + Q  KKLQ +  KL A           D+A  L        KA+ E
Sbjct: 18  EKQALKKLQASL-KLYAD----------DSAPAL------AIKATME 47



 Score = 30.0 bits (66), Expect = 3.5
 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 5/31 (16%)

Query: 893 LKELQTQLSRAKKYKESNDERIVSFIRSEFE 923
           LK+LQ  L   K Y  ++D      I++  E
Sbjct: 22  LKKLQASL---KLY--ADDSAPALAIKATME 47


>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family
           M20/M25/M40, structural genomics; 2.04A {Bacillus cereus
           atcc 10987}
          Length = 373

 Score = 30.2 bits (66), Expect = 2.6
 Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 4/39 (10%)

Query: 117 DRLLCRFMDMVE----TEDEHKINKQVRDALESAGFDLE 151
           +RL+  FM++V+    T+ E +I K +       G ++ 
Sbjct: 6   ERLVNEFMELVQVDSETKFEAEICKVLTKKFTDLGVEVF 44


>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
           nucleotide-binding, phosphorylation, acetylation,
           alternative splicing, coiled coil; HET: GDP GTP; 4.00A
           {Homo sapiens}
          Length = 418

 Score = 30.3 bits (67), Expect = 2.8
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 399 AQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEK 439
            + E+ ++  EA+ K   EK  +   EKA+ E   + L+++
Sbjct: 362 RRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQ 402


>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen,
           blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
           SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
          Length = 464

 Score = 29.8 bits (66), Expect = 3.7
 Identities = 21/229 (9%), Positives = 60/229 (26%), Gaps = 19/229 (8%)

Query: 382 ANFTSELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTP 441
             + +E     + ARA+   +K++             +    + +  ++      +    
Sbjct: 4   VEYDNEEDSPQIDARAHRPLDKRQEAAPTLRPVAPPISGTGYQPRPPKQDKQAMKKGPII 63

Query: 442 IKAEG------DDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETE 495
               G      D+ G            L P   EL+    + +K  +P   +  DR    
Sbjct: 64  YPDAGGCKHPLDELG-----------VLCPTGCELQTTLLKQEKTVKPVLRDLKDRVAKF 112

Query: 496 RKNQDILDNSLLAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGE 555
                 +   +                     ++ +  ++      +          +  
Sbjct: 113 SDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRV 172

Query: 556 SDYAGIKLTKKEKELQEQEENLRVAEIIQQSRMQSEDLQEKAWDSYKEW 604
                  L KK ++L+         +  +   + S ++   +    ++ 
Sbjct: 173 LRAVIDSLHKKIQKLENAIATQT--DYCRSPCVASCNIPVVSGRECEDI 219


>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 9.00A {Bos
           taurus}
          Length = 205

 Score = 29.8 bits (66), Expect = 3.9
 Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 396 RANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAE 445
           +    +E     +  +++  REKA K+ +E   R+    +  +     A+
Sbjct: 109 QRKRLQELDAASKVMEQE-WREKAKKDLEEWNQRQSEQVEKNKINNRIAD 157



 Score = 29.4 bits (65), Expect = 4.4
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 403 KQRREQEAKEKADREKADKEAKEKADREKADKDLQE 438
           ++ RE++ K   + + A K  +++  REKA KDL+E
Sbjct: 103 RKWREEQRKRLQELDAASKVMEQE-WREKAKKDLEE 137


>2bap_D Diaphanous protein homolog 1; armadillo repeats, all helical,
           signaling protein; 3.30A {Mus musculus}
          Length = 56

 Score = 29.9 bits (67), Expect = 4.0
 Identities = 10/23 (43%), Positives = 17/23 (73%)

Query: 405 RREQEAKEKADREKADKEAKEKA 427
           RR + AKEKA++E+ +K+ K + 
Sbjct: 2   RRAKLAKEKAEKERLEKQQKREQ 24


>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, merlin,
           actin binding, masking, regulation, SELF-inhibition cell
           adhesion; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A
           1e5w_A
          Length = 575

 Score = 29.8 bits (66), Expect = 4.5
 Identities = 29/260 (11%), Positives = 77/260 (29%), Gaps = 6/260 (2%)

Query: 356 YHWAEIRHGNRFKAETRLAYSTIANVANFTSELKQATVLARANAQEEKQRREQEAKEKAD 415
              A+        A    A        +   ++++    ++AN  E +    +  ++   
Sbjct: 315 AKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQ 374

Query: 416 REKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVPTHSVKLPPKEEELEEVKD 475
            + A +E +++ +  +A     E+T      +   L    +     ++   ++E+E    
Sbjct: 375 LQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLE-DEIRAKQEEVSRIQQEVELKDS 433

Query: 476 EGKKGKEPGTTETDDREETERKNQDILDNSLLAGKTHTKNETPAIPTAKAPPAQAHKGIQ 535
           E ++ +E    E +D    + +    L  +      H        P          +   
Sbjct: 434 ETRRLQE----EVEDARRKQDEAAAALLAATTPQHHHVAERADTDPDHDNASDAGSESGG 489

Query: 536 DKKPQDQREKPLASDIGVGESDYAGIKLTKKEKELQEQEENLRVAEIIQQSRMQSEDLQE 595
               +   +           ++    +L  + K L++                   +   
Sbjct: 490 GDLARGPDDLVDPVADRRTLAERN-ERLHNQLKALKQDLARSCDETKETAMDKIHRENVR 548

Query: 596 KAWDSYKEWKSLSPDEIKQR 615
           +  D YK  + +     K+R
Sbjct: 549 QGRDKYKTLREIRKGNTKRR 568


>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation,
           ribosome inhibitor, hydrolase; HET: CIT; 2.30A
           {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1
           PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B
          Length = 551

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 32/281 (11%), Positives = 78/281 (27%), Gaps = 25/281 (8%)

Query: 340 DQIKQLRDLASKVKADYHWAEIRHGNRFKAETRLAYSTIANVANFTSELKQATVLARANA 399
           DQ+KQ +D  ++ + ++             E   A    AN     ++ +QA  +   N+
Sbjct: 294 DQVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNS 353

Query: 400 QEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVPTH 459
           ++ +     +    A  E                +  Q                 +    
Sbjct: 354 RKSELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDA 413

Query: 460 SVK-LPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLAGKTHTKNETP 518
           + K     +  L    +  KK ++   +  ++  + + K +          K        
Sbjct: 414 AAKEKSDADAALSSAMESRKKKEDKKRSAENNLNDEKNKPR----------KGFKDYGHD 463

Query: 519 AIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKKEKELQEQEENLR 578
             P  K    +    ++   P+  ++                 K  +   +   +     
Sbjct: 464 YHPAPKTENIKGLGDLKPGIPKTPKQNGGG-------------KRKRWTGDKGRKIYEWD 510

Query: 579 VAEIIQQSRMQSEDLQEKAWDSYKEWKSLSPDEIKQRFQKY 619
            ++  +    ++ D Q       K    L   + K+  +KY
Sbjct: 511 -SQHGELEGYRASDGQHLGSFDPKTGNQLKGPDPKRNIKKY 550


>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics,
           NPPSFA, national project on protein structural and
           functional analyses; 1.85A {Pyrococcus horikoshii OT3}
           SCOP: d.81.4.1 PDB: 2dma_A
          Length = 198

 Score = 29.3 bits (65), Expect = 5.7
 Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 396 RANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAE 445
              A+ + +    EA+++A++ K   EA+  A+ +      + KT  + E
Sbjct: 12  NKEAERKIEYILNEARQQAEKIKE--EARRNAEAKAEWIIRRAKTQAELE 59


>2dbn_A Hypothetical protein YBIU; alpha/beta structure, structural
           genomics, NPPSFA, national project on protein structural
           and functional analyses; 1.70A {Escherichia coli} PDB:
           2dbi_A 2csg_A*
          Length = 461

 Score = 28.8 bits (64), Expect = 7.1
 Identities = 10/76 (13%), Positives = 29/76 (38%), Gaps = 6/76 (7%)

Query: 886 PSDSTADLKELQTQLSRAKKYKESNDERIVSFIRSEFEREIKELK----SVI-EADAKEN 940
           P+D  A +++++  L       +    ++   I +    EI  LK    +V       + 
Sbjct: 51  PADHKAAIRQMKHALRAQLGDVQQIFNQLSDDIATRVA-EINALKAQGDAVWPVLSYADI 109

Query: 941 PNPNKNQKKLQKTREK 956
              +   ++ ++ + +
Sbjct: 110 KAGHVTAEQREQIKRR 125


>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis,
           epididymiti mastitis, dehydration of fumarate to malate,
           KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
          Length = 478

 Score = 28.8 bits (64), Expect = 7.1
 Identities = 14/108 (12%), Positives = 30/108 (27%), Gaps = 6/108 (5%)

Query: 611 EIKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAINHFLDNDFGYYRIHNFLSQWSPLGLM 670
           EI+    +                   Q   + I + L            L+ + P   +
Sbjct: 328 EIRLPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNAFEP---L 384

Query: 671 YEKDELHGVEAVYQKLDVLFRHCIENLRANKNAVDAMSKAVEAGESSV 718
              + L  +  + + +  L   C++ + AN    +      E   S  
Sbjct: 385 IVYNILSSMRLLGRAMTNLAERCVDGIEANV---ERCRAGAEESISLA 429


>2vk9_A Alpha-toxin; glycosyltransferase; 2.85A {Clostridium novyi} SCOP:
           c.68.1.22
          Length = 551

 Score = 29.1 bits (65), Expect = 7.2
 Identities = 14/113 (12%), Positives = 41/113 (36%), Gaps = 10/113 (8%)

Query: 833 SSYSKLFEIFYGDWTNNAIKEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTAD 892
             Y  ++++F  D+      ++    +   + ++  ++      +  S +          
Sbjct: 114 LEYYNMWKMFNKDYNIRLFYDKNSLLVNTLKTAIIQESSKVIIEQNQSNILDGTYGHNKF 173

Query: 893 LKELQTQLSRAKK----------YKESNDERIVSFIRSEFEREIKELKSVIEA 935
             +    + R K+             S D+ I++F+ + F+ +I +L +  E 
Sbjct: 174 YSDRMKLIYRYKRELKMLYENMKQNNSVDDIIINFLSNYFKYDIGKLNNQKEN 226


>1ciy_A Cryia(A); toxin, ICP; 2.25A {Bacillus thuringiensis} SCOP: b.18.1.3
           b.77.2.1 f.1.3.1
          Length = 590

 Score = 28.8 bits (64), Expect = 7.7
 Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 4/73 (5%)

Query: 123 FMDMVETEDEHKINKQVRDALESAGFDLESTQENIRKVESALIN-NNMKDAFRFLELAQK 181
           F+  +E     +I +  R+   S    LE      +    +              E  + 
Sbjct: 48  FLVQIEQLINQRIEEFARNQAIS---RLEGLSNLYQIYAESFREWEADPTNPALREEMRI 104

Query: 182 SKETADSHIIEAI 194
                +S +  AI
Sbjct: 105 QFNDMNSALTTAI 117


>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD,
           FCPH, BRCT, hydrolase, BEF3, acylphosphate analog,
           cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces
           pombe}
          Length = 442

 Score = 28.6 bits (63), Expect = 8.4
 Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 1/124 (0%)

Query: 845 DWTNNAIKEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDST-ADLKELQTQLSRA 903
           DW  N IK   Y           N    +  +     L          D  +   + +  
Sbjct: 166 DWNPNLIKVVPYEFFVGIGDINSNFLAKSTPLPEQEQLIPLEIPKDEPDSVDEINEENEE 225

Query: 904 KKYKESNDERIVSFIRSEFEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQLSS 963
               +S++        +  E+ + +   +   +A E  N  +      +  E+ +A+  +
Sbjct: 226 TPEYDSSNSSYAQDSSTIPEKTLLKDTFLQNREALEEQNKERVTALELQKSERPLAKQQN 285

Query: 964 RLKE 967
            L E
Sbjct: 286 ALLE 289


>3k5b_E V-type ATP synthase subunit E; right handed coiled coil, vacuolar
           ATPase/synthase, V-type ATPase/synthase, A-type
           ATPase/synthase; 3.10A {Thermus thermophilus HB8}
          Length = 188

 Score = 28.7 bits (64), Expect = 8.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 396 RANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEK 439
               + E Q   QEA+ KA+  K + E K KA  +  ++ L+ +
Sbjct: 9   SQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQ 52


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.312    0.130    0.366 

Gapped
Lambda     K      H
   0.267   0.0569    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 10,542,321
Number of extensions: 511764
Number of successful extensions: 2245
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2164
Number of HSP's successfully gapped: 206
Length of query: 1246
Length of database: 5,693,230
Length adjustment: 103
Effective length of query: 1143
Effective length of database: 3,196,098
Effective search space: 3653140014
Effective search space used: 3653140014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.0 bits)