RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781206|ref|YP_003065619.1| hypothetical protein
CLIBASIA_05565 [Candidatus Liberibacter asiaticus str. psy62]
         (1246 letters)



>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha, AccA {Escherichia coli
           [TaxId: 562]}
          Length = 316

 Score = 32.0 bits (72), Expect = 0.32
 Identities = 8/48 (16%), Positives = 22/48 (45%)

Query: 921 EFEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQLSSRLKEL 968
           +FE+ I EL++ I++    +    K    + +   +L  +     +++
Sbjct: 4   DFEQPIAELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKI 51



 Score = 28.1 bits (62), Expect = 4.0
 Identities = 10/45 (22%), Positives = 22/45 (48%)

Query: 921 EFEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQLSSRL 965
           E E +I  L +    D K + N ++   +L++   +L  ++ + L
Sbjct: 11  ELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKIFADL 55


>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 332

 Score = 29.9 bits (67), Expect = 1.2
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 12/51 (23%)

Query: 381 VANFTSELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREK 431
           + NF +   QA        +E ++RRE E K      +  K AKEKA++E+
Sbjct: 293 LHNFRNMFLQA-------VKENQKRRETEEK-----MRRAKLAKEKAEKER 331


>d2vk9a1 c.68.1.22 (A:2-541) Alpha-toxin {Clostridium novyi [TaxId:
           1542]}
          Length = 540

 Score = 29.1 bits (65), Expect = 2.4
 Identities = 14/113 (12%), Positives = 41/113 (36%), Gaps = 10/113 (8%)

Query: 833 SSYSKLFEIFYGDWTNNAIKEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTAD 892
             Y  ++++F  D+      ++    +   + ++  ++      +  S +          
Sbjct: 113 LEYYNMWKMFNKDYNIRLFYDKNSLLVNTLKTAIIQESSKVIIEQNQSNILDGTYGHNKF 172

Query: 893 LKELQTQLSRAKK----------YKESNDERIVSFIRSEFEREIKELKSVIEA 935
             +    + R K+             S D+ I++F+ + F+ +I +L +  E 
Sbjct: 173 YSDRMKLIYRYKRELKMLYENMKQNNSVDDIIINFLSNYFKYDIGKLNNQKEN 225


>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
           9913]}
          Length = 98

 Score = 28.4 bits (63), Expect = 4.1
 Identities = 8/60 (13%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 593 LQEKAWDSYKEWKSL------SPDEIKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAINH 646
           +    W    +WK +      +P+++K+ ++K   V +   +      +  +     +N 
Sbjct: 25  MHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELND 84


>d2crua1 a.5.6.1 (A:8-112) Programmed cell death protein 5 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 105

 Score = 28.1 bits (63), Expect = 4.4
 Identities = 10/43 (23%), Positives = 18/43 (41%)

Query: 387 ELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADR 429
           EL+         AQ+E + RE E +     +  D+ A+ +   
Sbjct: 8   ELQAKHGDPGDAAQQEAKHREAEMRNSILAQVLDQSARARLSN 50


>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 417

 Score = 28.0 bits (62), Expect = 4.7
 Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 8/76 (10%)

Query: 886 PSDSTADLKELQTQLSRAKKYKESNDERIVSFIRSEFEREIKELKS-------VIEADAK 938
           P+D  A +++++  L       ++  +R+ + I +    EI +LK+       +I     
Sbjct: 9   PADPKAAIRQMKQALRAQIGDVQAVFDRLSATIAARVA-EINDLKAQGQPVWPIIPFSEL 67

Query: 939 ENPNPNKNQKKLQKTR 954
              N +   +   K R
Sbjct: 68  AMGNISDATRAEVKRR 83


>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
           {Burkholderia glumae [TaxId: 337]}
          Length = 280

 Score = 28.1 bits (62), Expect = 4.8
 Identities = 6/41 (14%), Positives = 19/41 (46%)

Query: 399 AQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEK 439
            Q+++  + +     A+R++   +     DR+     L+++
Sbjct: 221 QQDDEAWQTRYQAYAAERDRIAAQGLAPQDRDARIAQLRQQ 261


>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon
           Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 107

 Score = 27.8 bits (62), Expect = 5.6
 Identities = 17/98 (17%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 869 QAHLNAEVERLSGLAQQPSDSTADLKELQTQLSRAKKYKESNDERIVSFIRSEFEREIKE 928
           Q    A   +   +  Q +++   L+EL      A+ YK S +      IR   +   +E
Sbjct: 14  QQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGN----ILIRVAKDELTEE 69

Query: 929 LKSVIEADAKENPNPNKNQKKLQKTREKLVAQLSSRLK 966
           L+  +E          + ++++ K  +++   +   +K
Sbjct: 70  LQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEAMK 107


>d1g4ma2 b.1.18.11 (A:176-393) Arrestin {Cow (Bos taurus),
            beta-arrestin 1 [TaxId: 9913]}
          Length = 218

 Score = 27.0 bits (59), Expect = 8.6
 Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 1056 LSWKGWHQLTPAPKISTPSFEVSSYVNPKRMHADTES-DIYFEEFKR 1101
            L +   H             E  + V+   +  DT   DI FE+F R
Sbjct: 172  LPFTLMHPKPKEEPPHREVPEHETPVDTNLIELDTNDDDIVFEDFAR 218


>d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase
           {Thermotoga maritima [TaxId: 2336]}
          Length = 414

 Score = 26.9 bits (58), Expect = 9.2
 Identities = 6/34 (17%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 591 EDLQE---KAWDSYKEWKSLSPDEIKQRFQKYAK 621
           ++L E   K  +++   ++ +  E  +  +K A+
Sbjct: 1   DELLEKAKKVREAWDVLRNATTREKNKAIKKIAE 34


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.130    0.366 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,560,947
Number of extensions: 223677
Number of successful extensions: 717
Number of sequences better than 10.0: 1
Number of HSP's gapped: 693
Number of HSP's successfully gapped: 60
Length of query: 1246
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1150
Effective length of database: 1,089,516
Effective search space: 1252943400
Effective search space used: 1252943400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.4 bits)