RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter asiaticus str. psy62] (1246 letters) >d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]} Length = 316 Score = 32.0 bits (72), Expect = 0.32 Identities = 8/48 (16%), Positives = 22/48 (45%) Query: 921 EFEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQLSSRLKEL 968 +FE+ I EL++ I++ + K + + +L + +++ Sbjct: 4 DFEQPIAELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKI 51 Score = 28.1 bits (62), Expect = 4.0 Identities = 10/45 (22%), Positives = 22/45 (48%) Query: 921 EFEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQLSSRL 965 E E +I L + D K + N ++ +L++ +L ++ + L Sbjct: 11 ELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKIFADL 55 >d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 332 Score = 29.9 bits (67), Expect = 1.2 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 12/51 (23%) Query: 381 VANFTSELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREK 431 + NF + QA +E ++RRE E K + K AKEKA++E+ Sbjct: 293 LHNFRNMFLQA-------VKENQKRRETEEK-----MRRAKLAKEKAEKER 331 >d2vk9a1 c.68.1.22 (A:2-541) Alpha-toxin {Clostridium novyi [TaxId: 1542]} Length = 540 Score = 29.1 bits (65), Expect = 2.4 Identities = 14/113 (12%), Positives = 41/113 (36%), Gaps = 10/113 (8%) Query: 833 SSYSKLFEIFYGDWTNNAIKEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTAD 892 Y ++++F D+ ++ + + ++ ++ + S + Sbjct: 113 LEYYNMWKMFNKDYNIRLFYDKNSLLVNTLKTAIIQESSKVIIEQNQSNILDGTYGHNKF 172 Query: 893 LKELQTQLSRAKK----------YKESNDERIVSFIRSEFEREIKELKSVIEA 935 + + R K+ S D+ I++F+ + F+ +I +L + E Sbjct: 173 YSDRMKLIYRYKRELKMLYENMKQNNSVDDIIINFLSNYFKYDIGKLNNQKEN 225 >d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98 Score = 28.4 bits (63), Expect = 4.1 Identities = 8/60 (13%), Positives = 23/60 (38%), Gaps = 6/60 (10%) Query: 593 LQEKAWDSYKEWKSL------SPDEIKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAINH 646 + W +WK + +P+++K+ ++K V + + + + +N Sbjct: 25 MHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELND 84 >d2crua1 a.5.6.1 (A:8-112) Programmed cell death protein 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 105 Score = 28.1 bits (63), Expect = 4.4 Identities = 10/43 (23%), Positives = 18/43 (41%) Query: 387 ELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADR 429 EL+ AQ+E + RE E + + D+ A+ + Sbjct: 8 ELQAKHGDPGDAAQQEAKHREAEMRNSILAQVLDQSARARLSN 50 >d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella typhimurium [TaxId: 90371]} Length = 417 Score = 28.0 bits (62), Expect = 4.7 Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 8/76 (10%) Query: 886 PSDSTADLKELQTQLSRAKKYKESNDERIVSFIRSEFEREIKELKS-------VIEADAK 938 P+D A +++++ L ++ +R+ + I + EI +LK+ +I Sbjct: 9 PADPKAAIRQMKQALRAQIGDVQAVFDRLSATIAARVA-EINDLKAQGQPVWPIIPFSEL 67 Query: 939 ENPNPNKNQKKLQKTR 954 N + + K R Sbjct: 68 AMGNISDATRAEVKRR 83 >d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) {Burkholderia glumae [TaxId: 337]} Length = 280 Score = 28.1 bits (62), Expect = 4.8 Identities = 6/41 (14%), Positives = 19/41 (46%) Query: 399 AQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEK 439 Q+++ + + A+R++ + DR+ L+++ Sbjct: 221 QQDDEAWQTRYQAYAAERDRIAAQGLAPQDRDARIAQLRQQ 261 >d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 107 Score = 27.8 bits (62), Expect = 5.6 Identities = 17/98 (17%), Positives = 39/98 (39%), Gaps = 4/98 (4%) Query: 869 QAHLNAEVERLSGLAQQPSDSTADLKELQTQLSRAKKYKESNDERIVSFIRSEFEREIKE 928 Q A + + Q +++ L+EL A+ YK S + IR + +E Sbjct: 14 QQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGN----ILIRVAKDELTEE 69 Query: 929 LKSVIEADAKENPNPNKNQKKLQKTREKLVAQLSSRLK 966 L+ +E + ++++ K +++ + +K Sbjct: 70 LQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEAMK 107 >d1g4ma2 b.1.18.11 (A:176-393) Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]} Length = 218 Score = 27.0 bits (59), Expect = 8.6 Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 1/47 (2%) Query: 1056 LSWKGWHQLTPAPKISTPSFEVSSYVNPKRMHADTES-DIYFEEFKR 1101 L + H E + V+ + DT DI FE+F R Sbjct: 172 LPFTLMHPKPKEEPPHREVPEHETPVDTNLIELDTNDDDIVFEDFAR 218 >d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Thermotoga maritima [TaxId: 2336]} Length = 414 Score = 26.9 bits (58), Expect = 9.2 Identities = 6/34 (17%), Positives = 17/34 (50%), Gaps = 3/34 (8%) Query: 591 EDLQE---KAWDSYKEWKSLSPDEIKQRFQKYAK 621 ++L E K +++ ++ + E + +K A+ Sbjct: 1 DELLEKAKKVREAWDVLRNATTREKNKAIKKIAE 34 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.312 0.130 0.366 Gapped Lambda K H 0.267 0.0603 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 4,560,947 Number of extensions: 223677 Number of successful extensions: 717 Number of sequences better than 10.0: 1 Number of HSP's gapped: 693 Number of HSP's successfully gapped: 60 Length of query: 1246 Length of database: 2,407,596 Length adjustment: 96 Effective length of query: 1150 Effective length of database: 1,089,516 Effective search space: 1252943400 Effective search space used: 1252943400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 58 (26.4 bits)