BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781206|ref|YP_003065619.1| hypothetical protein
CLIBASIA_05565 [Candidatus Liberibacter asiaticus str. psy62]
(1246 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1246
Score = 2569 bits (6659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1246/1246 (100%), Positives = 1246/1246 (100%)
Query: 1 MNELATSIDYQTNNLDQDKIPSEDVAKTLTSIQDNIKHLREFIIAWSSDLNPHKDRYDYI 60
MNELATSIDYQTNNLDQDKIPSEDVAKTLTSIQDNIKHLREFIIAWSSDLNPHKDRYDYI
Sbjct: 1 MNELATSIDYQTNNLDQDKIPSEDVAKTLTSIQDNIKHLREFIIAWSSDLNPHKDRYDYI 60
Query: 61 VGPIEQRLKKVSERYERVVSRDLTLVIEAGLKDLKEVGDTLKRLAETGEVILSDKSDRLL 120
VGPIEQRLKKVSERYERVVSRDLTLVIEAGLKDLKEVGDTLKRLAETGEVILSDKSDRLL
Sbjct: 61 VGPIEQRLKKVSERYERVVSRDLTLVIEAGLKDLKEVGDTLKRLAETGEVILSDKSDRLL 120
Query: 121 CRFMDMVETEDEHKINKQVRDALESAGFDLESTQENIRKVESALINNNMKDAFRFLELAQ 180
CRFMDMVETEDEHKINKQVRDALESAGFDLESTQENIRKVESALINNNMKDAFRFLELAQ
Sbjct: 121 CRFMDMVETEDEHKINKQVRDALESAGFDLESTQENIRKVESALINNNMKDAFRFLELAQ 180
Query: 181 KSKETADSHIIEAIDVGTKLKENTPPTTFTSISKVLLKSNNMQDVVFTKIKEVVKKHVNA 240
KSKETADSHIIEAIDVGTKLKENTPPTTFTSISKVLLKSNNMQDVVFTKIKEVVKKHVNA
Sbjct: 181 KSKETADSHIIEAIDVGTKLKENTPPTTFTSISKVLLKSNNMQDVVFTKIKEVVKKHVNA 240
Query: 241 ELGHRKLRGLAFDHTYFNDKLNQFLKEIKNHQKEYDESEKGSSKARYHAAYAHIYWDLAN 300
ELGHRKLRGLAFDHTYFNDKLNQFLKEIKNHQKEYDESEKGSSKARYHAAYAHIYWDLAN
Sbjct: 241 ELGHRKLRGLAFDHTYFNDKLNQFLKEIKNHQKEYDESEKGSSKARYHAAYAHIYWDLAN 300
Query: 301 DWVNGRVGDKSDEWARTSTNIASWIGRITRTEGLGGVTYDQIKQLRDLASKVKADYHWAE 360
DWVNGRVGDKSDEWARTSTNIASWIGRITRTEGLGGVTYDQIKQLRDLASKVKADYHWAE
Sbjct: 301 DWVNGRVGDKSDEWARTSTNIASWIGRITRTEGLGGVTYDQIKQLRDLASKVKADYHWAE 360
Query: 361 IRHGNRFKAETRLAYSTIANVANFTSELKQATVLARANAQEEKQRREQEAKEKADREKAD 420
IRHGNRFKAETRLAYSTIANVANFTSELKQATVLARANAQEEKQRREQEAKEKADREKAD
Sbjct: 361 IRHGNRFKAETRLAYSTIANVANFTSELKQATVLARANAQEEKQRREQEAKEKADREKAD 420
Query: 421 KEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKG 480
KEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKG
Sbjct: 421 KEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKG 480
Query: 481 KEPGTTETDDREETERKNQDILDNSLLAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQ 540
KEPGTTETDDREETERKNQDILDNSLLAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQ
Sbjct: 481 KEPGTTETDDREETERKNQDILDNSLLAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQ 540
Query: 541 DQREKPLASDIGVGESDYAGIKLTKKEKELQEQEENLRVAEIIQQSRMQSEDLQEKAWDS 600
DQREKPLASDIGVGESDYAGIKLTKKEKELQEQEENLRVAEIIQQSRMQSEDLQEKAWDS
Sbjct: 541 DQREKPLASDIGVGESDYAGIKLTKKEKELQEQEENLRVAEIIQQSRMQSEDLQEKAWDS 600
Query: 601 YKEWKSLSPDEIKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAINHFLDNDFGYYRIHNF 660
YKEWKSLSPDEIKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAINHFLDNDFGYYRIHNF
Sbjct: 601 YKEWKSLSPDEIKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAINHFLDNDFGYYRIHNF 660
Query: 661 LSQWSPLGLMYEKDELHGVEAVYQKLDVLFRHCIENLRANKNAVDAMSKAVEAGESSVRK 720
LSQWSPLGLMYEKDELHGVEAVYQKLDVLFRHCIENLRANKNAVDAMSKAVEAGESSVRK
Sbjct: 661 LSQWSPLGLMYEKDELHGVEAVYQKLDVLFRHCIENLRANKNAVDAMSKAVEAGESSVRK 720
Query: 721 HSFEVLSSKHQKSVIAVNNFIKEITHHTRRLVKEDPKRGKSESYLSDIRSELQKVNKTVM 780
HSFEVLSSKHQKSVIAVNNFIKEITHHTRRLVKEDPKRGKSESYLSDIRSELQKVNKTVM
Sbjct: 721 HSFEVLSSKHQKSVIAVNNFIKEITHHTRRLVKEDPKRGKSESYLSDIRSELQKVNKTVM 780
Query: 781 DIRIKLRLYGIFQDIPQEQPPLYTIISGSEKILQGDYTFPPLSSLDVQSKFDSSYSKLFE 840
DIRIKLRLYGIFQDIPQEQPPLYTIISGSEKILQGDYTFPPLSSLDVQSKFDSSYSKLFE
Sbjct: 781 DIRIKLRLYGIFQDIPQEQPPLYTIISGSEKILQGDYTFPPLSSLDVQSKFDSSYSKLFE 840
Query: 841 IFYGDWTNNAIKEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTADLKELQTQL 900
IFYGDWTNNAIKEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTADLKELQTQL
Sbjct: 841 IFYGDWTNNAIKEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTADLKELQTQL 900
Query: 901 SRAKKYKESNDERIVSFIRSEFEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQ 960
SRAKKYKESNDERIVSFIRSEFEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQ
Sbjct: 901 SRAKKYKESNDERIVSFIRSEFEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQ 960
Query: 961 LSSRLKELNIDNAYGLWNEYKEDFKASFEYPLGTYEPAILGAMKDMDRLHPIYSVSKTIQ 1020
LSSRLKELNIDNAYGLWNEYKEDFKASFEYPLGTYEPAILGAMKDMDRLHPIYSVSKTIQ
Sbjct: 961 LSSRLKELNIDNAYGLWNEYKEDFKASFEYPLGTYEPAILGAMKDMDRLHPIYSVSKTIQ 1020
Query: 1021 KAGGDPSLMMDYEKVEPSDVMAGLPDDLAKRFKALLSWKGWHQLTPAPKISTPSFEVSSY 1080
KAGGDPSLMMDYEKVEPSDVMAGLPDDLAKRFKALLSWKGWHQLTPAPKISTPSFEVSSY
Sbjct: 1021 KAGGDPSLMMDYEKVEPSDVMAGLPDDLAKRFKALLSWKGWHQLTPAPKISTPSFEVSSY 1080
Query: 1081 VNPKRMHADTESDIYFEEFKRSLSSWEDEPRIEVERDATLPRLAKDDGSKEDEYEGGANE 1140
VNPKRMHADTESDIYFEEFKRSLSSWEDEPRIEVERDATLPRLAKDDGSKEDEYEGGANE
Sbjct: 1081 VNPKRMHADTESDIYFEEFKRSLSSWEDEPRIEVERDATLPRLAKDDGSKEDEYEGGANE 1140
Query: 1141 RYVCIPSMDTSESFNSTMGKKRRIFKVVVRVINTADLEVGILGFPIVPVEELRGKPKTGE 1200
RYVCIPSMDTSESFNSTMGKKRRIFKVVVRVINTADLEVGILGFPIVPVEELRGKPKTGE
Sbjct: 1141 RYVCIPSMDTSESFNSTMGKKRRIFKVVVRVINTADLEVGILGFPIVPVEELRGKPKTGE 1200
Query: 1201 FEVLVPSDASLNPEIIIRQKTGGYFCLTSITAHTQFEGERYEHRHG 1246
FEVLVPSDASLNPEIIIRQKTGGYFCLTSITAHTQFEGERYEHRHG
Sbjct: 1201 FEVLVPSDASLNPEIIIRQKTGGYFCLTSITAHTQFEGERYEHRHG 1246
>gi|254780916|ref|YP_003065329.1| putative sigma-54-dependent transcription regulator protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 482
Score = 28.5 bits (62), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 123 FMDMVETEDE-HKINKQVRDALESAGFDLESTQENIRKVESALINNNMKDAFRFLELAQK 181
F+ ++ ED+ I K + D + +++TQ+NI+ + L N K FL L +
Sbjct: 57 FLSLINCEDDKENILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISK---FFLNLVSR 113
Query: 182 SKETADSHIIEAIDVGTKLKENTPPT 207
K+ DS I L+E P+
Sbjct: 114 -KQLCDSII-------CALREGVVPS 131
>gi|254780879|ref|YP_003065292.1| hypothetical protein CLIBASIA_03880 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 652
Score = 28.1 bits (61), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 612 IKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAINHFL 648
I RF + FYR +PVDGS + E+ K+ FL
Sbjct: 449 IHARFGETRTRFYRFLNPVDGSVEYFNENGKSSRPFL 485
>gi|254780140|ref|YP_003064553.1| putative ABC transporter, substrate-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 452
Score = 26.6 bits (57), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 330 RTEGLGGVTYDQIKQLR 346
RT+GL G+TY ++ LR
Sbjct: 102 RTQGLAGITYIELSTLR 118
>gi|254781114|ref|YP_003065527.1| glycosyl transferase family protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 263
Score = 26.6 bits (57), Expect = 2.8, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 1186 IVPVEELRGKPKTGEFEVLVPSDASLNPEIIIRQKTGGYF 1225
++ + LR KPK + +P + ++ I+ +T GYF
Sbjct: 117 LIKFDALRKKPKKDSYLCTLPGNFDIHQPRILSPRTTGYF 156
>gi|254780236|ref|YP_003064649.1| 50S ribosomal protein L17 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 136
Score = 26.2 bits (56), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 1009 LHPIYSVSKTIQKAGGDPSLMMDYEKVEPSDVMAGLPDDLAKRF 1052
L PI T+ K GG SL + K+ DV+ L +AKR+
Sbjct: 44 LRPIVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLFGIIAKRY 87
>gi|254780206|ref|YP_003064619.1| phosphoribosylamine--glycine ligase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 424
Score = 25.8 bits (55), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 122 RFMDMVETEDEHKINKQVRDALESAGFDLESTQENIRKVESA 163
+ +D+V E + + DAL +AGF + + K+ES+
Sbjct: 61 KHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESS 102
>gi|254780774|ref|YP_003065187.1| phosphatidate cytidylyltransferase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 269
Score = 25.0 bits (53), Expect = 8.1, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 806 ISGSEKILQGDYTFPPLSSLDVQSKFDSSYSKLFEIFYGDWTNNAIKEERYW 857
+S SEKIL G +TF + + + F S++ L + DW + +K +W
Sbjct: 54 LSLSEKIL-GLFTFFLVFFMIITGFFKSAFFLLMLYSFIDWMISIMKNRAFW 104
>gi|254780627|ref|YP_003065040.1| chromosomal replication initiation protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 502
Score = 25.0 bits (53), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 925 EIKELKSVIEAD----AKENPNPNKNQKKLQKTREKLVAQLSSRLKELNIDNAYGLW 977
+++E+ + I+ + A++ PN + +++ L+ E + +SSRLK + Y W
Sbjct: 2 QLREVAACIQENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASW 58
>gi|254780300|ref|YP_003064713.1| aspartate carbamoyltransferase catalytic subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 316
Score = 25.0 bits (53), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 570 LQEQEENLRVAEIIQQSRMQSEDLQEKAWDSYKEWKSL-SPDEIKQRFQK 618
+ ++ L+ ++I RMQ E + S +E+K + S DE K ++ K
Sbjct: 208 FHDMQKGLKNVDVIMILRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAK 257
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.312 0.130 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 787,454
Number of Sequences: 1233
Number of extensions: 34205
Number of successful extensions: 108
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 82
Number of HSP's gapped (non-prelim): 19
length of query: 1246
length of database: 328,796
effective HSP length: 85
effective length of query: 1161
effective length of database: 223,991
effective search space: 260053551
effective search space used: 260053551
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 44 (21.6 bits)