BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781207|ref|YP_003065620.1| hypothetical protein
CLIBASIA_05570 [Candidatus Liberibacter asiaticus str. psy62]
         (80 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254781207|ref|YP_003065620.1| hypothetical protein CLIBASIA_05570 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040884|gb|ACT57680.1| hypothetical protein CLIBASIA_05570 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 80

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 80/80 (100%), Positives = 80/80 (100%)

Query: 1  MGFWNSITSIAATVGAVVGTVATAAALATPIGWVGAAVAGVGAAVVGAGASDLAMHKMRE 60
          MGFWNSITSIAATVGAVVGTVATAAALATPIGWVGAAVAGVGAAVVGAGASDLAMHKMRE
Sbjct: 1  MGFWNSITSIAATVGAVVGTVATAAALATPIGWVGAAVAGVGAAVVGAGASDLAMHKMRE 60

Query: 61 QEEEEKKLLKKGLKKRQKNY 80
          QEEEEKKLLKKGLKKRQKNY
Sbjct: 61 QEEEEKKLLKKGLKKRQKNY 80


>gi|317120672|gb|ADV02495.1| hypothetical protein SC1_gp060 [Liberibacter phage SC1]
 gi|317120816|gb|ADV02637.1| hypothetical protein SC1_gp060 [Candidatus Liberibacter
          asiaticus]
          Length = 1340

 Score = 60.9 bits (146), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 63/84 (75%), Positives = 66/84 (78%), Gaps = 13/84 (15%)

Query: 1  MGFWNSITSIAATVGAVVGTVATAAALATPIGWVGAAVAGVGAAVVGAGASDLAMH---- 56
          MGFWNSITSIAATVGAVVGTVATAAALATPIGWVGAAVAGVGAAVVGAGASDLAMH    
Sbjct: 1  MGFWNSITSIAATVGAVVGTVATAAALATPIGWVGAAVAGVGAAVVGAGASDLAMHKMRE 60

Query: 57 ---------KMREQEEEEKKLLKK 71
                   + R +EE EK L+ K
Sbjct: 61 QEEEEKKASEKRIKEETEKLLISK 84


>gi|254933575|ref|ZP_05266934.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|293585136|gb|EFF97168.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
          Length = 1599

 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 1   MGFWNSITSIAATVGA----VVGTVATAAALATPIGWVGAAVAGVGAAVVGAGASDLAMH 56
           +G  + +TS+AA  GA    V GT   AA LA   G + A +   GAA++G G   L  H
Sbjct: 473 LGLGSKLTSLAAGFGATTTAVEGTSLAAAGLAGSFGALPAVIGLAGAALIGVGIYALDKH 532

Query: 57  KMREQEEEEK 66
             + +E +E+
Sbjct: 533 ISKIEESKER 542


>gi|328474314|gb|EGF45119.1| hypothetical protein VP10329_16445 [Vibrio parahaemolyticus 10329]
          Length = 336

 Score = 39.4 bits (90), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 24/38 (63%)

Query: 8   TSIAATVGAVVGTVATAAALATPIGWVGAAVAGVGAAV 45
           T+ +  VG V G   +   +ATP+GWVGA V GV ++V
Sbjct: 265 TAASTVVGTVSGIAISLFVVATPVGWVGALVLGVASSV 302


>gi|156975567|ref|YP_001446474.1| hypothetical protein VIBHAR_03299 [Vibrio harveyi ATCC BAA-1116]
 gi|156527161|gb|ABU72247.1| hypothetical protein VIBHAR_03299 [Vibrio harveyi ATCC BAA-1116]
          Length = 338

 Score = 39.4 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query: 8   TSIAATVGAVVGTVATAAALATPIGWVGAAVAGVGAAVVGAGASDLAMHKMRE 60
           T+++  VG   G V +   LATP+GW+GA   GV + +    +  +  +  +E
Sbjct: 267 TAVSTVVGLAGGAVISLVVLATPVGWIGALALGVTSGIASYASGKVVANVYKE 319


>gi|315302848|ref|ZP_07873606.1| gp15 [Listeria ivanovii FSL F6-596]
 gi|313628795|gb|EFR97170.1| gp15 [Listeria ivanovii FSL F6-596]
          Length = 844

 Score = 38.2 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 29/56 (51%)

Query: 11  AATVGAVVGTVATAAALATPIGWVGAAVAGVGAAVVGAGASDLAMHKMREQEEEEK 66
            AT  AV GT   AA LA   G + A +   GAA++G G   L  H  + +E EE+
Sbjct: 487 GATTTAVEGTSLAAAGLAGSFGALPAVIGLAGAALIGVGIYALDKHISKIEESEER 542


>gi|269966193|ref|ZP_06180282.1| hypothetical protein VMC_17120 [Vibrio alginolyticus 40B]
 gi|269829108|gb|EEZ83353.1| hypothetical protein VMC_17120 [Vibrio alginolyticus 40B]
          Length = 347

 Score = 37.8 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 8   TSIAATVGAVVGTVATAAALATPIGWVGAAVAGVGAAVVGAGASDLAMHKMRE 60
           T+ +  VG   G V +   +ATP+GW+GA   GV +A     +  +   K +E
Sbjct: 276 TAASTVVGLAGGAVISLVVMATPVGWIGAIALGVVSASASYASGKVVADKYKE 328


>gi|313635396|gb|EFS01657.1| gp15 [Listeria seeligeri FSL N1-067]
          Length = 1337

 Score = 36.3 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 29/56 (51%)

Query: 11  AATVGAVVGTVATAAALATPIGWVGAAVAGVGAAVVGAGASDLAMHKMREQEEEEK 66
            AT  AV GT   AA LA   G + A +   GAA++G G   L  H  + +E +E+
Sbjct: 487 GATTTAVEGTSLAAAGLAGSFGALPAVITVAGAALLGVGIYALDKHISKIEESKER 542


>gi|224500922|ref|ZP_03669229.1| hypothetical protein LmonFR_00125 [Listeria monocytogenes FSL
           R2-561]
          Length = 1599

 Score = 36.3 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 29/56 (51%)

Query: 11  AATVGAVVGTVATAAALATPIGWVGAAVAGVGAAVVGAGASDLAMHKMREQEEEEK 66
            AT  AV GT   AA LA   G + A +   GAA++G G   L  H  + +E +E+
Sbjct: 487 GATTTAVEGTSLAAAGLAGSFGALPAVITVAGAALLGVGIYALDKHISKIEESKER 542


>gi|317033872|ref|XP_001395607.2| efflux pump antibiotic resistance protein [Aspergillus niger CBS
           513.88]
          Length = 571

 Score = 35.9 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/33 (57%), Positives = 24/33 (72%)

Query: 18  VGTVATAAALATPIGWVGAAVAGVGAAVVGAGA 50
           VGT+  AAA ++P+  VG AVAG+GAA V  GA
Sbjct: 97  VGTILCAAANSSPMFIVGRAVAGLGAAGVLQGA 129


>gi|134080328|emb|CAK46250.1| unnamed protein product [Aspergillus niger]
          Length = 569

 Score = 35.9 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/33 (57%), Positives = 24/33 (72%)

Query: 18  VGTVATAAALATPIGWVGAAVAGVGAAVVGAGA 50
           VGT+  AAA ++P+  VG AVAG+GAA V  GA
Sbjct: 97  VGTILCAAANSSPMFIVGRAVAGLGAAGVLQGA 129


>gi|308809207|ref|XP_003081913.1| CBS domain-containing protein / transporter associated
           domain-containing protein (ISS) [Ostreococcus tauri]
 gi|116060380|emb|CAL55716.1| CBS domain-containing protein / transporter associated
           domain-containing protein (ISS) [Ostreococcus tauri]
          Length = 520

 Score = 35.5 bits (80), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 8   TSIAATVGAVVGTVATAAALATPIGWVGAAVAGVGAA---VVGAGASDLAMHKMREQ--E 62
           T IA    AV   VATA  +ATP+ W+   V  VG     +V AG S   +    E    
Sbjct: 133 TEIAPKSVAVQHAVATAKVIATPVYWLSLIVYPVGRIFQWIVNAGFSLFGVETSAEPFVS 192

Query: 63  EEEKKLLKKGLKK 75
           EEE KL+  G  K
Sbjct: 193 EEELKLVLAGATK 205


>gi|242813635|ref|XP_002486206.1| efflux pump antibiotic resistance protein, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|242813642|ref|XP_002486207.1| efflux pump antibiotic resistance protein, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|242813648|ref|XP_002486208.1| efflux pump antibiotic resistance protein, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218714545|gb|EED13968.1| efflux pump antibiotic resistance protein, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218714546|gb|EED13969.1| efflux pump antibiotic resistance protein, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218714547|gb|EED13970.1| efflux pump antibiotic resistance protein, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 527

 Score = 35.5 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 23/33 (69%)

Query: 18  VGTVATAAALATPIGWVGAAVAGVGAAVVGAGA 50
           VGT+  AAA ++P+  VG A+AG GAA V  GA
Sbjct: 186 VGTILCAAATSSPMFIVGRAIAGFGAAGVLQGA 218


>gi|242813630|ref|XP_002486205.1| efflux pump antibiotic resistance protein, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218714544|gb|EED13967.1| efflux pump antibiotic resistance protein, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 642

 Score = 35.5 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 23/33 (69%)

Query: 18  VGTVATAAALATPIGWVGAAVAGVGAAVVGAGA 50
           VGT+  AAA ++P+  VG A+AG GAA V  GA
Sbjct: 186 VGTILCAAATSSPMFIVGRAIAGFGAAGVLQGA 218


>gi|103486523|ref|YP_616084.1| hypothetical protein Sala_1034 [Sphingopyxis alaskensis RB2256]
 gi|98976600|gb|ABF52751.1| protein of unknown function DUF1295 [Sphingopyxis alaskensis
           RB2256]
          Length = 269

 Score = 35.1 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 16  AVVGTVATAAALATPIGWVGAAVAGVGAAVVGAGASDLAMHKMREQEEEEKKLLKKGLKK 75
           A +G  A+A      IGWVGAA A  G A    G  D  +H  R     + ++L  GL +
Sbjct: 130 AQIGIWASAGEGVGIIGWVGAAAALTGIAFESIG--DAQLHAFRRNPANKGRVLDTGLWR 187

Query: 76  --RQKNY 80
             R  NY
Sbjct: 188 YTRHPNY 194


>gi|260437285|ref|ZP_05791101.1| phosphoenolpyruvate-protein phosphotransferase [Butyrivibrio
           crossotus DSM 2876]
 gi|292810595|gb|EFF69800.1| phosphoenolpyruvate-protein phosphotransferase [Butyrivibrio
           crossotus DSM 2876]
          Length = 554

 Score = 34.7 bits (78), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 2   GFWNSITSIAATVGAVVGTVATAAALATPIGWVGAAVAGV-GAAVVGAGASDLAMHKMRE 60
           G  NS T+I A   A+   V T   L   I  V A V G  G   +      L + K R+
Sbjct: 183 GSLNSHTAILARTMAIPALVNTPLPLDEEIDGVMAVVDGTKGVIYIDPDCETLELMKKRK 242

Query: 61  QEEEEKKLLKKGLKKR 76
            EE+EK++L + LK +
Sbjct: 243 AEEDEKRVLLQTLKGK 258


>gi|291518950|emb|CBK74171.1| hypothetical protein CIY_13670 [Butyrivibrio fibrisolvens 16/4]
          Length = 185

 Score = 34.7 bits (78), Expect = 4.6,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 11/71 (15%)

Query: 7   ITSIAATVGAVVGTVATAAALATPIGWVGAAVAGVGAAVVGAGASDLAMH-KMREQEEEE 65
           ITS  AT GAVVG    A      +   G AVAGVG          L+ H K ++  +E+
Sbjct: 75  ITSGLATAGAVVGGGMAAGIFVLAVPIAGLAVAGVG----------LSSHLKNKQLNQEK 124

Query: 66  KKLLKKGLKKR 76
           ++L K+ L+K+
Sbjct: 125 ERLYKEALQKQ 135


>gi|261333538|emb|CBH16533.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 636

 Score = 34.4 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 10/69 (14%)

Query: 6   SITSIAATVGAVVGTVATAAALATPIGWVGAAVAGVGAAVVGAGASDLAMHKMREQEEEE 65
           SI   A    AVV   A A     P+      VAG GA      A+DLA+     QEEE+
Sbjct: 241 SIVPEALAFSAVVPHTANALQAQIPV------VAGTGAVGPAVSANDLAL----AQEEED 290

Query: 66  KKLLKKGLK 74
           +K L+K +K
Sbjct: 291 RKQLEKIIK 299


>gi|71748994|ref|XP_827836.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70833220|gb|EAN78724.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 535

 Score = 34.4 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 10/69 (14%)

Query: 6   SITSIAATVGAVVGTVATAAALATPIGWVGAAVAGVGAAVVGAGASDLAMHKMREQEEEE 65
           SI   A    AVV   A A     P+      VAG GA      A+DLA+     QEEE+
Sbjct: 140 SIVPEALAFSAVVPHTANALQAQIPV------VAGTGAVGPAVSANDLAL----AQEEED 189

Query: 66  KKLLKKGLK 74
           +K L+K +K
Sbjct: 190 RKQLEKIIK 198


>gi|134102689|ref|YP_001108350.1| sodium:solute symporter [Saccharopolyspora erythraea NRRL 2338]
 gi|291004625|ref|ZP_06562598.1| sodium:solute symporter [Saccharopolyspora erythraea NRRL 2338]
 gi|133915312|emb|CAM05425.1| sodium:solute symporter [Saccharopolyspora erythraea NRRL 2338]
          Length = 560

 Score = 34.4 bits (77), Expect = 5.4,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 3   FWNSITSIAATVGAVVGTVATAAALATPIGWVGAAVAGVGAAVVGAGAS 51
           FW  +T  A  +G V+GT+A         G V   + G GA+ VGAGA+
Sbjct: 443 FWKRMTPTAGWLGLVLGTLAAVTVFGLSEGGV-LDLPGQGASFVGAGAA 490


>gi|326331219|ref|ZP_08197513.1| lipolytic enzyme, G-D-S-L [Nocardioidaceae bacterium Broad-1]
 gi|325950989|gb|EGD43035.1| lipolytic enzyme, G-D-S-L [Nocardioidaceae bacterium Broad-1]
          Length = 404

 Score = 34.4 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 4  WNSITSIAATVGAVVGTVATAAALATPIGWVGAAVAGVGAAVVGAGASDLAMHKM 58
          W    ++ A V  +  TV   AA A P+G  GA+   VG     AG +DL++  +
Sbjct: 4  WTRAFAVLAAVLTLASTVPAQAAPAHPVGTWGASADEVGGTTGAAGLADLSVRNL 58


>gi|197301512|ref|ZP_03166590.1| hypothetical protein RUMLAC_00243 [Ruminococcus lactaris ATCC
           29176]
 gi|197299401|gb|EDY33923.1| hypothetical protein RUMLAC_00243 [Ruminococcus lactaris ATCC
           29176]
          Length = 275

 Score = 34.4 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 18  VGTVATAAALATPIGWVGAAVAGVGAAVVGAGASDLAMHKMREQEEEEKK 67
           + +V +++A++ P+   G A+AG G A+ G+  ++  M  +R Q+ E  K
Sbjct: 104 IASVGSSSAISIPVATEGIAIAGTGLAISGSALAN--MFDVRIQKSESNK 151


>gi|284028588|ref|YP_003378519.1| transport system permease protein [Kribbella flavida DSM 17836]
 gi|283807881|gb|ADB29720.1| transport system permease protein [Kribbella flavida DSM 17836]
          Length = 329

 Score = 33.6 bits (75), Expect = 8.7,   Method: Composition-based stats.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 15  GAVVGTVATAAALATPIGWVGAAVAGVGAAVVGA 48
            A+V    TA ALA PIG+VG AV     A+VGA
Sbjct: 237 AAIVLLAGTATALAGPIGFVGLAVPHAARALVGA 270


>gi|310816689|ref|YP_003964653.1| putative transcriptional regulator [Ketogulonicigenium vulgare
          Y25]
 gi|308755424|gb|ADO43353.1| putative transcriptional regulator [Ketogulonicigenium vulgare
          Y25]
          Length = 189

 Score = 33.6 bits (75), Expect = 8.7,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 10 IAATVGAVVGTVATAAALATPIGWVGAAVAGVGAAVVGAGASDLAMHKMREQEEEEKKLL 69
          +AA +   V      AAL T     G  +  VG A     A DLA H MRE+ EE +KL 
Sbjct: 15 LAARLPEGVDIQGALAALLTHYAGRGVELVRVGEAYAFRTAGDLA-HLMREEVEETRKLS 73

Query: 70 KKGLK 74
          + G++
Sbjct: 74 RAGIE 78


>gi|229819861|ref|YP_002881387.1| hypothetical protein Bcav_1366 [Beutenbergia cavernae DSM 12333]
 gi|229565774|gb|ACQ79625.1| hypothetical protein Bcav_1366 [Beutenbergia cavernae DSM 12333]
          Length = 741

 Score = 33.6 bits (75), Expect = 9.0,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 29/64 (45%)

Query: 1   MGFWNSITSIAATVGAVVGTVATAAALATPIGWVGAAVAGVGAAVVGAGASDLAMHKMRE 60
           +G   ++T     V A+   +   AALA  +G V A V GV    VGA A     H +  
Sbjct: 191 LGVVAALTDGLGVVAALTDGLGVVAALAAGLGVVAAPVGGVARCPVGAPADRACAHGVLS 250

Query: 61  QEEE 64
           +E +
Sbjct: 251 EENQ 254


>gi|225869651|ref|YP_002745598.1| phage minor tail protein [Streptococcus equi subsp. equi 4047]
 gi|225699055|emb|CAW92182.1| putative phage minor tail protein [Streptococcus equi subsp. equi
           4047]
          Length = 1086

 Score = 33.6 bits (75), Expect = 9.2,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 19/68 (27%)

Query: 27  LATPIGWVGAAVAGVGAAVVGAGA---------SDLAMHKMREQE---EEEKKL---LKK 71
           L  PIGWV   VAGVG A+V AG          SD      +EQE   E  KKL   +K+
Sbjct: 429 LTGPIGWV---VAGVG-ALVAAGVSLWSWLTRESDETKKLKKEQEGLVESNKKLRDSVKE 484

Query: 72  GLKKRQKN 79
           G+++R+KN
Sbjct: 485 GVQERKKN 492


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.313    0.126    0.355 

Lambda     K      H
   0.267   0.0398    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 601,017,376
Number of Sequences: 14124377
Number of extensions: 19514291
Number of successful extensions: 168764
Number of sequences better than 10.0: 204
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 113
Number of HSP's that attempted gapping in prelim test: 168328
Number of HSP's gapped (non-prelim): 455
length of query: 80
length of database: 4,842,793,630
effective HSP length: 51
effective length of query: 29
effective length of database: 4,122,450,403
effective search space: 119551061687
effective search space used: 119551061687
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 75 (33.5 bits)