RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781207|ref|YP_003065620.1| hypothetical protein
CLIBASIA_05570 [Candidatus Liberibacter asiaticus str. psy62]
(80 letters)
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.41
Identities = 8/16 (50%), Positives = 10/16 (62%), Gaps = 1/16 (6%)
Query: 65 EKKLLKKGLKKRQKNY 80
EK+ LKK L+ K Y
Sbjct: 18 EKQALKK-LQASLKLY 32
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 27.2 bits (60), Expect = 0.98
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 8 TSIAATVGAVVGTVATAAALATPIGW 33
+ + G G V TA A+A W
Sbjct: 265 SYLKGATGHSQGLV-TAVAIAETDSW 289
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 26.6 bits (59), Expect = 1.3
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 55 MHKMREQEEEEKKLLKKGLKKRQK 78
+++ + E+K K KK K
Sbjct: 107 IYQWHLVQREKKLSRTKEEKKAIK 130
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, topoisomerase I;
HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2
e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A*
1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A*
1rr8_C* 1ej9_A*
Length = 591
Score = 26.7 bits (59), Expect = 1.3
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 55 MHKMREQEEEEKKLLKKGLKKRQK 78
M + + + E +K + K K + K
Sbjct: 131 MSQYFKAQTEARKQMSKEEKLKIK 154
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 26.3 bits (57), Expect = 1.8
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 53 LAMHKMREQEEEEKKLLKKGLKKRQKN 79
+ ++R Q EKKL ++ +
Sbjct: 272 VCQQRIRRQLAREKKLYANMFERLAEE 298
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.7 bits (55), Expect = 2.6
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 10/34 (29%)
Query: 54 AMHKMREQEEEEKKLLKKGLK---KRQ-----KN 79
A K+ EQE EK KK L+ +RQ KN
Sbjct: 103 AASKVMEQEWREKA--KKDLEEWNQRQSEQVEKN 134
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: SAM; 1.50A {Thermus
thermophilus} SCOP: c.116.1.1
Length = 194
Score = 25.7 bits (55), Expect = 2.7
Identities = 7/22 (31%), Positives = 16/22 (72%)
Query: 58 MREQEEEEKKLLKKGLKKRQKN 79
MRE+ E ++ +++ L++RQ +
Sbjct: 1 MRERTEARRRRIEEVLRRRQPD 22
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 25.5 bits (56), Expect = 3.3
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 55 MHKMREQEEEEKKLLKKGLKKRQK 78
M + ++E+KK L KK+ +
Sbjct: 97 MFDYFQLQKEQKKQLTSQEKKQIR 120
>1kcm_A PITP alpha, phosphatidylinositol transfer protein alpha;
phospholipid binding protein, phospholipid transport;
2.00A {Mus musculus} SCOP: d.129.3.4 PDB: 1t27_A*
1uw5_A* 2a1l_A*
Length = 270
Score = 25.1 bits (55), Expect = 3.8
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 52 DLAMHKMREQEEEEKKLLKKGLKKRQKN 79
DL M +R EEE K+ L + +K
Sbjct: 237 DLTMDDIRRMEEETKRQLDEMRQKDPVK 264
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, cytoplasm,
GTP- binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 3.20A
{Nostoc SP}
Length = 462
Score = 24.5 bits (52), Expect = 6.2
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 13/58 (22%)
Query: 23 TAAALATPIGWVGAAVAGVGAAVVGAGASDLAMHKMREQEEEEKKLLKKGLKKRQKNY 80
T AA+AT I +V V V G+ A +A + L K+ +++
Sbjct: 9 TIAAIATAIVPQQGSVGIVR--VSGSQAIAIA-----------QTLFDAPGKQVWESH 53
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 358
Score = 24.3 bits (52), Expect = 6.5
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 50 ASDLAMHKMREQEEEEKKLLKKGLKKRQKN 79
S +A K+ E E K L+ K R++
Sbjct: 267 CSKIAGVKVAEITELILKALENDQKVRKEG 296
>2h8n_A HD4, histone deacetylase 4; alpha helix, polar zipper,
transcription; 2.60A {Homo sapiens} PDB: 2o94_A
Length = 112
Score = 24.1 bits (52), Expect = 7.9
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 50 ASDLAMHKMREQEEEEKKLLKKGLKKRQK 78
S +A +REQ+ +++ L K ++ Q+
Sbjct: 17 GSHMAEPALREQQLQQELLALKQKQQIQR 45
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.313 0.126 0.355
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 645,773
Number of extensions: 26304
Number of successful extensions: 229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 31
Length of query: 80
Length of database: 5,693,230
Length adjustment: 49
Effective length of query: 31
Effective length of database: 4,505,274
Effective search space: 139663494
Effective search space used: 139663494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.4 bits)