RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781207|ref|YP_003065620.1| hypothetical protein CLIBASIA_05570 [Candidatus Liberibacter asiaticus str. psy62] (80 letters) >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 28.4 bits (62), Expect = 0.41 Identities = 8/16 (50%), Positives = 10/16 (62%), Gaps = 1/16 (6%) Query: 65 EKKLLKKGLKKRQKNY 80 EK+ LKK L+ K Y Sbjct: 18 EKQALKK-LQASLKLY 32 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 27.2 bits (60), Expect = 0.98 Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 1/26 (3%) Query: 8 TSIAATVGAVVGTVATAAALATPIGW 33 + + G G V TA A+A W Sbjct: 265 SYLKGATGHSQGLV-TAVAIAETDSW 289 >2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani} Length = 432 Score = 26.6 bits (59), Expect = 1.3 Identities = 6/24 (25%), Positives = 11/24 (45%) Query: 55 MHKMREQEEEEKKLLKKGLKKRQK 78 +++ + E+K K KK K Sbjct: 107 IYQWHLVQREKKLSRTKEEKKAIK 130 >1a31_A Protein (topoisomerase I); topoisomerase I/DNA, topoisomerase I; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A* Length = 591 Score = 26.7 bits (59), Expect = 1.3 Identities = 6/24 (25%), Positives = 12/24 (50%) Query: 55 MHKMREQEEEEKKLLKKGLKKRQK 78 M + + + E +K + K K + K Sbjct: 131 MSQYFKAQTEARKQMSKEEKLKIK 154 >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 Score = 26.3 bits (57), Expect = 1.8 Identities = 6/27 (22%), Positives = 12/27 (44%) Query: 53 LAMHKMREQEEEEKKLLKKGLKKRQKN 79 + ++R Q EKKL ++ + Sbjct: 272 VCQQRIRRQLAREKKLYANMFERLAEE 298 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 25.7 bits (55), Expect = 2.6 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 10/34 (29%) Query: 54 AMHKMREQEEEEKKLLKKGLK---KRQ-----KN 79 A K+ EQE EK KK L+ +RQ KN Sbjct: 103 AASKVMEQEWREKA--KKDLEEWNQRQSEQVEKN 134 >1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1 Length = 194 Score = 25.7 bits (55), Expect = 2.7 Identities = 7/22 (31%), Positives = 16/22 (72%) Query: 58 MREQEEEEKKLLKKGLKKRQKN 79 MRE+ E ++ +++ L++RQ + Sbjct: 1 MRERTEARRRRIEEVLRRRQPD 22 >1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A {Saccharomyces cerevisiae} SCOP: e.15.1.1 Length = 223 Score = 25.5 bits (56), Expect = 3.3 Identities = 7/24 (29%), Positives = 13/24 (54%) Query: 55 MHKMREQEEEEKKLLKKGLKKRQK 78 M + ++E+KK L KK+ + Sbjct: 97 MFDYFQLQKEQKKQLTSQEKKQIR 120 >1kcm_A PITP alpha, phosphatidylinositol transfer protein alpha; phospholipid binding protein, phospholipid transport; 2.00A {Mus musculus} SCOP: d.129.3.4 PDB: 1t27_A* 1uw5_A* 2a1l_A* Length = 270 Score = 25.1 bits (55), Expect = 3.8 Identities = 10/28 (35%), Positives = 14/28 (50%) Query: 52 DLAMHKMREQEEEEKKLLKKGLKKRQKN 79 DL M +R EEE K+ L + +K Sbjct: 237 DLTMDDIRRMEEETKRQLDEMRQKDPVK 264 >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 3.20A {Nostoc SP} Length = 462 Score = 24.5 bits (52), Expect = 6.2 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 13/58 (22%) Query: 23 TAAALATPIGWVGAAVAGVGAAVVGAGASDLAMHKMREQEEEEKKLLKKGLKKRQKNY 80 T AA+AT I +V V V G+ A +A + L K+ +++ Sbjct: 9 TIAAIATAIVPQQGSVGIVR--VSGSQAIAIA-----------QTLFDAPGKQVWESH 53 >2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 358 Score = 24.3 bits (52), Expect = 6.5 Identities = 9/30 (30%), Positives = 14/30 (46%) Query: 50 ASDLAMHKMREQEEEEKKLLKKGLKKRQKN 79 S +A K+ E E K L+ K R++ Sbjct: 267 CSKIAGVKVAEITELILKALENDQKVRKEG 296 >2h8n_A HD4, histone deacetylase 4; alpha helix, polar zipper, transcription; 2.60A {Homo sapiens} PDB: 2o94_A Length = 112 Score = 24.1 bits (52), Expect = 7.9 Identities = 8/29 (27%), Positives = 17/29 (58%) Query: 50 ASDLAMHKMREQEEEEKKLLKKGLKKRQK 78 S +A +REQ+ +++ L K ++ Q+ Sbjct: 17 GSHMAEPALREQQLQQELLALKQKQQIQR 45 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.313 0.126 0.355 Gapped Lambda K H 0.267 0.0552 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 645,773 Number of extensions: 26304 Number of successful extensions: 229 Number of sequences better than 10.0: 1 Number of HSP's gapped: 228 Number of HSP's successfully gapped: 31 Length of query: 80 Length of database: 5,693,230 Length adjustment: 49 Effective length of query: 31 Effective length of database: 4,505,274 Effective search space: 139663494 Effective search space used: 139663494 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 50 (23.4 bits)