BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781207|ref|YP_003065620.1| hypothetical protein
CLIBASIA_05570 [Candidatus Liberibacter asiaticus str. psy62]
         (80 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781207|ref|YP_003065620.1| hypothetical protein CLIBASIA_05570 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 80

 Score =  156 bits (395), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 80/80 (100%), Positives = 80/80 (100%)

Query: 1  MGFWNSITSIAATVGAVVGTVATAAALATPIGWVGAAVAGVGAAVVGAGASDLAMHKMRE 60
          MGFWNSITSIAATVGAVVGTVATAAALATPIGWVGAAVAGVGAAVVGAGASDLAMHKMRE
Sbjct: 1  MGFWNSITSIAATVGAVVGTVATAAALATPIGWVGAAVAGVGAAVVGAGASDLAMHKMRE 60

Query: 61 QEEEEKKLLKKGLKKRQKNY 80
          QEEEEKKLLKKGLKKRQKNY
Sbjct: 61 QEEEEKKLLKKGLKKRQKNY 80


>gi|254781009|ref|YP_003065422.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 750

 Score = 23.1 bits (48), Expect = 0.98,   Method: Composition-based stats.
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 52  DLAMHKMREQEEEEK 66
           DL  H+M E++EEEK
Sbjct: 603 DLYKHQMIEKKEEEK 617


>gi|254780561|ref|YP_003064974.1| thiamine transporter substrate binding subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 338

 Score = 23.1 bits (48), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 1   MGFWNSITSIAATVGAVVGTVATAAALATPIGW 33
           +GF N++  +A   G    +   A+ L  PI W
Sbjct: 90  LGFDNNLIDLARKTGLFAKSNIDASQLKLPIKW 122


>gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1162

 Score = 22.7 bits (47), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 48  AGASDLAMHKMREQEEEEKKLLKKGLKKRQ 77
           A A+D+  H  +  EEE +  LKK L K +
Sbjct: 149 ANATDIKEHDRKLHEEEREN-LKKTLSKEE 177


>gi|254780967|ref|YP_003065380.1| probable multidrug resistance transporter protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 398

 Score = 21.9 bits (45), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 2   GFWNSITSIAATVGAVVGTVATAAALATPIGWVGAAVA 39
           GF N++  I+  +G ++G           IG+ G AV+
Sbjct: 343 GFINTV--ISTILGIIIGQSFNGTTYPITIGFFGIAVS 378


>537021.9.peg.410_1 
          Length = 952

 Score = 21.6 bits (44), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 51  SDLAMHKMREQEEEEKKLLKKGLKK 75
           SDL  H  +  +EE  +LL  G+ +
Sbjct: 633 SDLIKHLKKSTQEEYNRLLYVGMTR 657


>gi|255764483|ref|YP_003065151.2| hypothetical protein CLIBASIA_03125 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 135

 Score = 20.8 bits (42), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 7/19 (36%), Positives = 14/19 (73%)

Query: 55 MHKMREQEEEEKKLLKKGL 73
          MH+ R++E + + + KKG+
Sbjct: 1  MHRKRQREIKNETVRKKGI 19


>gi|254780705|ref|YP_003065118.1| phosphate ABC transporter, permease protein PstA [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 425

 Score = 20.4 bits (41), Expect = 5.8,   Method: Composition-based stats.
 Identities = 8/11 (72%), Positives = 10/11 (90%)

Query: 38  VAGVGAAVVGA 48
           VAG+G AVVG+
Sbjct: 200 VAGIGVAVVGS 210


>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 610

 Score = 20.0 bits (40), Expect = 8.7,   Method: Composition-based stats.
 Identities = 6/18 (33%), Positives = 13/18 (72%)

Query: 56  HKMREQEEEEKKLLKKGL 73
           H ++++ E EK+ L+ G+
Sbjct: 221 HNLKKKNEAEKEWLRYGV 238


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.313    0.126    0.355 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,662
Number of Sequences: 1233
Number of extensions: 1239
Number of successful extensions: 17
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of query: 80
length of database: 328,796
effective HSP length: 49
effective length of query: 31
effective length of database: 268,379
effective search space:  8319749
effective search space used:  8319749
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 31 (16.5 bits)